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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr22 | 37675635 | 37675651 | TRUE | OK | 916.1 | 0.0168 | 0.1315 | 0.6714 | 0.289 | 0.145 | 1189.0 | 859.0 | 524.0 | 1009.0 | 1107.0 | 887.0 |
E002 | chr22 | 37675651 | 37675656 | TRUE | OK | 4419.4 | 0.00259 | 0.9626 | 0.992 | -0.013 | -0.007 | 5362.0 | 4445.0 | 3776.0 | 4392.0 | 4877.0 | 3874.0 |
E003 | chr22 | 37675656 | 37675681 | TRUE | OK | 17275.0 | 0.00263 | 0.8024 | 0.9483 | 0.011 | 0.005 | 20743.0 | 17389.0 | 14614.0 | 16692.0 | 19499.0 | 15488.0 |
E004 | chr22 | 37675681 | 37675687 | TRUE | OK | 17427.2 | 0.00257 | 0.7994 | 0.9476 | 0.011 | 0.005 | 20913.0 | 17560.0 | 14733.0 | 16827.0 | 19703.0 | 15607.0 |
E005 | chr22 | 37675687 | 37675711 | TRUE | OK | 27019.0 | 0.00446 | 0.2462 | 0.7478 | 0.116 | 0.058 | 31904.0 | 27101.0 | 22186.0 | 26383.0 | 31227.0 | 24484.0 |
E006 | chr22 | 37676124 | 37676188 | TRUE | OK | 23.3 | 0.0604 | 0.6427 | 0.8986 | 0.191 | 0.095 | 33.0 | 25.0 | 10.0 | 37.0 | 19.0 | 19.0 |
E007 | chr22 | 37676855 | 37676985 | TRUE | OK | 225.6 | 0.00152 | 9.895e-12 | 1.236e-08 | 0.696 | 0.348 | 205.0 | 179.0 | 141.0 | 257.0 | 321.0 | 253.0 |
E008 | chr22 | 37676985 | 37676998 | TRUE | OK | 29960.9 | 0.00444 | 0.3256 | 0.7818 | 0.097 | 0.049 | 35498.0 | 30151.0 | 24816.0 | 28866.0 | 34743.0 | 26977.0 |
E009 | chr22 | 37676998 | 37677065 | TRUE | OK | 37087.7 | 0.00428 | 0.3126 | 0.7763 | 0.103 | 0.051 | 43655.0 | 37359.0 | 31337.0 | 35055.0 | 43471.0 | 33104.0 |
E010 | chr22 | 37677065 | 37677228 | TRUE | OK | 193.8 | 0.0024 | 0.1263 | 0.6665 | 0.174 | 0.087 | 209.0 | 196.0 | 150.0 | 173.0 | 238.0 | 202.0 |
E011 | chr22 | 37677521 | 37677596 | TRUE | OK | 33.2 | 0.0466 | 0.2339 | 0.7424 | 0.443 | 0.221 | 48.0 | 23.0 | 17.0 | 34.0 | 31.0 | 50.0 |
E012 | chr22 | 37678375 | 37678392 | TRUE | OK | 401.0 | 0.00163 | 0.9897 | 0.9981 | -0.004 | -0.002 | 478.0 | 409.0 | 339.0 | 346.0 | 465.0 | 385.0 |
E013 | chr22 | 37678392 | 37678482 | TRUE | OK | 1051.3 | 0.00125 | 1.844e-27 | 1.192e-23 | 0.756 | 0.378 | 858.0 | 804.0 | 723.0 | 1244.0 | 1502.0 | 1166.0 |
E014 | chr22 | 37678482 | 37678654 | TRUE | OK | 47837.0 | 0.00601 | 0.8513 | 0.9624 | 0.030 | 0.014 | 55517.0 | 48651.0 | 41757.0 | 44053.0 | 56333.0 | 42308.0 |
E015 | chr22 | 37679602 | 37679640 | TRUE | OK | 22013.6 | 0.00358 | 0.1122 | 0.6508 | -0.159 | -0.079 | 27922.0 | 22296.0 | 19339.0 | 20031.0 | 25079.0 | 18530.0 |
E016 | chr22 | 37679640 | 37679802 | TRUE | OK | 18560.2 | 0.00314 | 0.0764 | 0.5963 | -0.168 | -0.084 | 23629.0 | 18703.0 | 16616.0 | 16929.0 | 20860.0 | 15557.0 |
J017 | chr22 | 37675711 | 37676855 | TRUE | OK | 67.9 | 0.00886 | 0.308 | 0.7746 | -0.229 | -0.115 | 79.0 | 94.0 | 51.0 | 52.0 | 76.0 | 59.0 |
J018 | chr22 | 37675711 | 37676985 | TRUE | OK | 26933.5 | 0.00426 | 0.2303 | 0.7406 | 0.117 | 0.058 | 31801.0 | 26987.0 | 22119.0 | 26308.0 | 31140.0 | 24412.0 |
J019 | chr22 | 37676188 | 37676985 | TRUE | OK | 8.9 | 0.0792 | 0.3073 | 0.7743 | 0.672 | 0.336 | 7.0 | 9.0 | 5.0 | 19.0 | 6.0 | 8.0 |
J020 | chr22 | 37677065 | 37677521 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0794 | 0.7045 | NA | NA | NA | 1.0 | 0.0 | 2.0 | 1.0 | 1.0 | 2.0 |
J021 | chr22 | 37677065 | 37678375 | TRUE | OK | 337.8 | 0.00105 | 0.9663 | 0.9927 | -0.003 | -0.002 | 394.0 | 348.0 | 289.0 | 298.0 | 385.0 | 325.0 |
J022 | chr22 | 37677065 | 37678482 | TRUE | OK | 35598.5 | 0.00391 | 0.3506 | 0.7915 | 0.092 | 0.046 | 42046.0 | 35760.0 | 30060.0 | 33688.0 | 41794.0 | 31660.0 |
J023 | chr22 | 37678392 | 37678482 | TRUE | OK | 12.6 | 0.0213 | 0.1344 | 0.6744 | 0.609 | 0.304 | 11.0 | 6.0 | 13.0 | 13.0 | 14.0 | 18.0 |
J024 | chr22 | 37678654 | 37679602 | TRUE | OK | 19972.9 | 0.00338 | 0.05997 | 0.5599 | -0.182 | -0.091 | 25611.0 | 20281.0 | 17661.0 | 17982.0 | 22751.0 | 16592.0 |
N025 | chr22 | 37677065 | 37679602 | TRUE | OK | 660.8 | 0.00196 | 0.1047 | 0.6413 | -0.146 | -0.073 | 746.0 | 738.0 | 624.0 | 546.0 | 724.0 | 603.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000100097.12 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |