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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr20 | 31739270 | 31739289 | TRUE | OK | 58.4 | 0.0337 | 0.6251 | 0.8923 | -0.193 | -0.097 | 94.0 | 64.0 | 33.0 | 70.0 | 39.0 | 60.0 |
E002 | chr20 | 31739289 | 31739621 | TRUE | OK | 3477.7 | 0.00681 | 0.8463 | 0.961 | -0.016 | -0.008 | 4190.0 | 3391.0 | 2873.0 | 4084.0 | 2811.0 | 3738.0 |
E003 | chr20 | 31742540 | 31742647 | TRUE | OK | 2605.3 | 0.00987 | 0.5413 | 0.8626 | -0.082 | -0.041 | 3199.0 | 2514.0 | 2277.0 | 3102.0 | 1929.0 | 2780.0 |
E004 | chr20 | 31757406 | 31757582 | TRUE | OK | 2979.9 | 0.0069 | 0.5142 | 0.8531 | -0.077 | -0.038 | 3540.0 | 2959.0 | 2604.0 | 3495.0 | 2311.0 | 3142.0 |
E005 | chr20 | 31760056 | 31760179 | TRUE | OK | 2554.9 | 0.0069 | 0.1045 | 0.6409 | -0.212 | -0.106 | 3117.0 | 2613.0 | 2399.0 | 2824.0 | 1868.0 | 2654.0 |
E006 | chr20 | 31766555 | 31766682 | TRUE | OK | 2504.8 | 0.00841 | 0.09179 | 0.6237 | -0.242 | -0.121 | 3067.0 | 2605.0 | 2368.0 | 2718.0 | 1764.0 | 2652.0 |
E007 | chr20 | 31770342 | 31770471 | TRUE | OK | 2245.6 | 0.00728 | 0.1353 | 0.675 | -0.199 | -0.100 | 2763.0 | 2312.0 | 2057.0 | 2470.0 | 1635.0 | 2374.0 |
E008 | chr20 | 31771559 | 31771682 | TRUE | OK | 2169.7 | 0.00383 | 0.1685 | 0.7028 | -0.138 | -0.069 | 2607.0 | 2136.0 | 2010.0 | 2358.0 | 1720.0 | 2300.0 |
E009 | chr20 | 31775866 | 31775988 | TRUE | OK | 3032.0 | 0.00573 | 0.2483 | 0.749 | -0.136 | -0.068 | 3673.0 | 2987.0 | 2765.0 | 3384.0 | 2340.0 | 3214.0 |
E010 | chr20 | 31777486 | 31777638 | TRUE | OK | 3482.8 | 0.00521 | 0.4051 | 0.8124 | -0.091 | -0.046 | 4194.0 | 3391.0 | 3097.0 | 3929.0 | 2773.0 | 3710.0 |
E011 | chr20 | 31778812 | 31778984 | TRUE | OK | 3548.4 | 0.00228 | 0.3234 | 0.7809 | -0.077 | -0.038 | 4224.0 | 3490.0 | 3119.0 | 3903.0 | 3029.0 | 3713.0 |
E012 | chr20 | 31780938 | 31781046 | TRUE | OK | 62.3 | 0.0166 | 0.6672 | 0.9068 | 0.139 | 0.070 | 61.0 | 53.0 | 61.0 | 91.0 | 44.0 | 65.0 |
E013 | chr20 | 31782248 | 31782390 | TRUE | OK | 2846.1 | 0.000396 | 0.3186 | 0.7787 | -0.039 | -0.020 | 3240.0 | 2785.0 | 2546.0 | 3059.0 | 2620.0 | 2941.0 |
E014 | chr20 | 31783704 | 31783921 | TRUE | OK | 3572.4 | 0.000372 | 0.5872 | 0.8791 | 0.022 | 0.011 | 3953.0 | 3465.0 | 3130.0 | 3911.0 | 3373.0 | 3732.0 |
E015 | chr20 | 31792734 | 31792830 | TRUE | OK | 2782.6 | 0.000692 | 0.8333 | 0.9572 | -0.009 | -0.004 | 3132.0 | 2702.0 | 2464.0 | 3089.0 | 2549.0 | 2870.0 |
E016 | chr20 | 31793847 | 31794024 | TRUE | OK | 3823.8 | 0.000686 | 0.05819 | 0.5552 | -0.089 | -0.045 | 4360.0 | 3807.0 | 3507.0 | 4127.0 | 3402.0 | 3892.0 |
E017 | chr20 | 31794401 | 31794548 | TRUE | OK | 3071.2 | 0.000866 | 0.6671 | 0.9067 | -0.024 | -0.012 | 3434.0 | 2936.0 | 2817.0 | 3278.0 | 2963.0 | 3099.0 |
E018 | chr20 | 31797403 | 31797515 | TRUE | OK | 2898.8 | 0.00266 | 0.3812 | 0.8028 | 0.076 | 0.038 | 3057.0 | 2711.0 | 2612.0 | 3063.0 | 3043.0 | 2966.0 |
E019 | chr20 | 31798364 | 31798552 | TRUE | OK | 3851.7 | 0.0052 | 0.1653 | 0.7005 | 0.170 | 0.085 | 4192.0 | 3479.0 | 3199.0 | 4035.0 | 4347.0 | 3969.0 |
E020 | chr20 | 31800969 | 31801800 | TRUE | OK | 6281.4 | 0.0115 | 0.278 | 0.7618 | 0.199 | 0.099 | 6796.0 | 5655.0 | 5228.0 | 6398.0 | 7498.0 | 6267.0 |
E021 | chr20 | 31801800 | 31801805 | TRUE | OK | 9.8 | 0.08 | 0.1669 | 0.7015 | -0.830 | -0.415 | 18.0 | 6.0 | 14.0 | 13.0 | 6.0 | 3.0 |
J022 | chr20 | 31739621 | 31742540 | TRUE | OK | 1971.6 | 0.00703 | 0.5637 | 0.871 | -0.068 | -0.034 | 2389.0 | 1927.0 | 1704.0 | 2325.0 | 1523.0 | 2084.0 |
J023 | chr20 | 31742647 | 31757406 | TRUE | OK | 1484.0 | 0.00995 | 0.574 | 0.8746 | -0.074 | -0.037 | 1816.0 | 1453.0 | 1277.0 | 1796.0 | 1091.0 | 1570.0 |
J024 | chr20 | 31757582 | 31760056 | TRUE | OK | 1584.5 | 0.0056 | 0.1972 | 0.7215 | -0.153 | -0.076 | 1948.0 | 1590.0 | 1432.0 | 1800.0 | 1207.0 | 1627.0 |
J025 | chr20 | 31760179 | 31766555 | TRUE | OK | 1501.8 | 0.00593 | 0.02357 | 0.4131 | -0.285 | -0.142 | 1872.0 | 1578.0 | 1450.0 | 1596.0 | 1071.0 | 1532.0 |
J026 | chr20 | 31766682 | 31770342 | TRUE | OK | 1381.5 | 0.0107 | 0.09899 | 0.6338 | -0.265 | -0.132 | 1765.0 | 1426.0 | 1301.0 | 1504.0 | 924.0 | 1463.0 |
J027 | chr20 | 31770471 | 31771559 | TRUE | OK | 1351.5 | 0.00588 | 0.233 | 0.7418 | -0.144 | -0.072 | 1650.0 | 1364.0 | 1214.0 | 1545.0 | 1023.0 | 1395.0 |
J028 | chr20 | 31771682 | 31775866 | TRUE | OK | 1381.4 | 0.00172 | 0.03287 | 0.4667 | -0.159 | -0.079 | 1651.0 | 1379.0 | 1301.0 | 1395.0 | 1147.0 | 1480.0 |
J029 | chr20 | 31775988 | 31777486 | TRUE | OK | 2143.6 | 0.00806 | 0.3086 | 0.7748 | -0.138 | -0.069 | 2654.0 | 2099.0 | 1935.0 | 2457.0 | 1585.0 | 2267.0 |
J030 | chr20 | 31777638 | 31778812 | TRUE | OK | 1903.2 | 0.00409 | 0.2462 | 0.7478 | -0.120 | -0.060 | 2342.0 | 1896.0 | 1672.0 | 2131.0 | 1524.0 | 1972.0 |
J031 | chr20 | 31778984 | 31780938 | TRUE | OK | 33.5 | 0.0104 | 0.6979 | 0.9165 | 0.115 | 0.058 | 40.0 | 28.0 | 28.0 | 45.0 | 22.0 | 40.0 |
J032 | chr20 | 31778984 | 31782248 | TRUE | OK | 1824.1 | 0.000448 | 0.01799 | 0.3722 | -0.106 | -0.053 | 2163.0 | 1792.0 | 1667.0 | 1929.0 | 1626.0 | 1852.0 |
J033 | chr20 | 31781046 | 31782248 | TRUE | OK | 30.5 | 0.0279 | 0.5031 | 0.8489 | 0.206 | 0.103 | 22.0 | 21.0 | 39.0 | 37.0 | 29.0 | 33.0 |
J034 | chr20 | 31782390 | 31783704 | TRUE | OK | 1603.2 | 0.000357 | 0.4105 | 0.8145 | -0.035 | -0.017 | 1777.0 | 1580.0 | 1460.0 | 1677.0 | 1515.0 | 1662.0 |
J035 | chr20 | 31783921 | 31792734 | TRUE | OK | 1880.2 | 0.000434 | 0.08357 | 0.6092 | 0.079 | 0.039 | 2087.0 | 1771.0 | 1593.0 | 2119.0 | 1809.0 | 1976.0 |
J036 | chr20 | 31792830 | 31793847 | TRUE | OK | 1953.1 | 0.000926 | 0.0131 | 0.3253 | -0.140 | -0.070 | 2336.0 | 1962.0 | 1789.0 | 2098.0 | 1670.0 | 1961.0 |
J037 | chr20 | 31794024 | 31794401 | TRUE | OK | 1934.4 | 0.000719 | 0.02793 | 0.4404 | -0.114 | -0.057 | 2208.0 | 1904.0 | 1847.0 | 2068.0 | 1705.0 | 1944.0 |
J038 | chr20 | 31794548 | 31797403 | TRUE | OK | 1798.5 | 0.00173 | 0.4908 | 0.8442 | 0.051 | 0.025 | 1941.0 | 1672.0 | 1631.0 | 1908.0 | 1854.0 | 1829.0 |
J039 | chr20 | 31797515 | 31798364 | TRUE | OK | 1489.6 | 0.00318 | 0.6432 | 0.8988 | 0.046 | 0.023 | 1590.0 | 1422.0 | 1336.0 | 1547.0 | 1597.0 | 1478.0 |
J040 | chr20 | 31798552 | 31800969 | TRUE | OK | 2247.3 | 0.00632 | 0.1468 | 0.6855 | 0.197 | 0.098 | 2544.0 | 1976.0 | 1766.0 | 2350.0 | 2595.0 | 2339.0 |
N041 | chr20 | 31739347 | 31742540 | TRUE | OK | 24.3 | 0.00584 | 0.1881 | 0.716 | -0.353 | -0.176 | 36.0 | 24.0 | 22.0 | 23.0 | 16.0 | 27.0 |
N042 | chr20 | 31739621 | 31757406 | TRUE | OK | 99.7 | 0.00405 | 0.7078 | 0.9197 | 0.062 | 0.031 | 125.0 | 87.0 | 80.0 | 116.0 | 83.0 | 114.0 |
N043 | chr20 | 31742647 | 31744550 | TRUE | OK | 16.4 | 0.00636 | 0.2908 | 0.7673 | 0.341 | 0.170 | 17.0 | 15.0 | 11.0 | 21.0 | 18.0 | 17.0 |
N044 | chr20 | 31742647 | 31757409 | TRUE | OK | 21.2 | 0.0302 | 0.9713 | 0.9938 | 0.014 | 0.007 | 33.0 | 15.0 | 16.0 | 24.0 | 13.0 | 29.0 |
N045 | chr20 | 31744675 | 31757406 | TRUE | OK | 20.0 | 0.00802 | 0.1939 | 0.7195 | 0.392 | 0.196 | 26.0 | 15.0 | 11.0 | 28.0 | 20.0 | 22.0 |
N046 | chr20 | 31766682 | 31770345 | TRUE | OK | 24.8 | 0.049 | 0.5948 | 0.8817 | -0.208 | -0.104 | 30.0 | 35.0 | 15.0 | 22.0 | 13.0 | 36.0 |
N047 | chr20 | 31777636 | 31778810 | TRUE | OK | 21.0 | 0.00578 | 1.851e-29 | 1.401e-25 | 5.904 | 2.952 | 2.0 | 0.0 | 0.0 | 46.0 | 36.0 | 41.0 |
N048 | chr20 | 31797515 | 31798385 | TRUE | OK | 145.7 | 0.00279 | 0.3118 | 0.776 | 0.135 | 0.067 | 160.0 | 134.0 | 119.0 | 140.0 | 154.0 | 172.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000088325.16 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |