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Normalized Counts Table (ENSG00000040199.18)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr16	71637834	71637835	TRUE	OK	4.3	0.0297	0.01631	0.3576	-1.715	-0.857	6.0	5.9	8.9	2.0	1.0	2.0
E002	chr16	71637835	71638383	TRUE	OK	29.4	0.00892	0.1525	0.6904	-0.393	-0.197	40.9	34.6	33.3	28.7	22.0	17.1
E003	chr16	71640521	71641040	TRUE	OK	322.8	0.00255	1.37e-20	5.79e-17	-1.055	-0.527	429.9	435.5	486.7	220.4	162.4	201.7
E004	chr16	71644750	71644855	FALSE	LOW_COUNTS_INDEP_FILTER	3.0	0.0396	0.6983	NA	NA	NA	2.6	4.0	4.4	3.0	2.1	2.0
E005	chr16	71644923	71644927	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.114	0.7224	NA	NA	NA	2.6	4.0	1.1	4.0	1.0	0.0
E006	chr16	71644927	71648169	TRUE	OK	786.2	0.00915	0.0005525	0.05307	0.555	0.277	768.5	820.5	733.9	832.1	732.2	830.2
E007	chr16	71648169	71650044	TRUE	OK	436.7	0.00182	0.9479	0.9884	0.011	0.006	487.0	476.1	480.0	409.1	304.8	463.0
E008	chr16	71652789	71653021	TRUE	OK	103.6	0.00362	0.5209	0.8556	-0.086	-0.043	120.3	116.8	115.3	109.7	57.6	101.9
E009	chr16	71655239	71655434	TRUE	OK	100.5	0.00498	0.1161	0.6559	-0.250	-0.125	123.7	108.9	125.3	91.9	51.3	101.9
E010	chr16	71656570	71656681	TRUE	OK	71.9	0.0148	0.8869	0.9725	-0.007	-0.003	71.6	69.3	98.7	69.2	37.7	84.7
E011	chr16	71658232	71658363	TRUE	OK	67.5	0.0199	0.5108	0.8519	0.227	0.114	72.5	55.4	80.9	86.0	34.6	75.7
E012	chr16	71658652	71658815	TRUE	OK	75.3	0.00629	0.2036	0.7253	0.262	0.131	68.2	76.2	86.5	92.9	47.1	80.7
E013	chr16	71663898	71663971	TRUE	OK	54.4	0.0243	0.841	0.9594	-0.025	-0.013	43.5	70.3	68.7	64.2	25.1	54.5
E014	chr16	71663971	71664099	TRUE	OK	65.4	0.037	0.9424	0.987	0.118	0.059	55.4	71.3	83.1	83.0	25.1	74.6
E015	chr16	71667177	71667333	TRUE	OK	77.1	0.0411	0.8428	0.9599	0.198	0.099	77.6	73.2	89.8	101.8	28.3	91.8
E016	chr16	71669274	71669370	TRUE	OK	74.1	0.0183	0.3275	0.7824	0.316	0.158	81.9	69.3	70.9	98.8	37.7	85.7
E017	chr16	71672261	71672322	TRUE	OK	64.2	0.0139	0.2971	0.7703	0.292	0.146	73.4	59.4	61.0	87.0	36.7	67.6
E018	chr16	71676446	71676587	TRUE	OK	80.4	0.00969	0.367	0.7977	0.219	0.110	89.6	86.1	73.2	95.9	45.0	92.8
E019	chr16	71676587	71676649	TRUE	OK	63.8	0.0119	0.5851	0.8785	0.151	0.076	77.6	68.3	55.4	68.2	35.6	77.7
E020	chr16	71676649	71678754	FALSE	LOW_COUNTS_INDEP_FILTER	1.9	0.169	0.9502	NA	NA	NA	2.6	4.0	0.0	0.0	2.1	3.0
E021	chr16	71678754	71678922	TRUE	OK	75.8	0.00326	0.2056	0.7266	0.215	0.108	84.4	79.2	70.9	77.1	57.6	85.7
E022	chr16	71678922	71678985	TRUE	OK	61.7	0.00453	0.9098	0.9784	-0.017	-0.008	64.0	60.4	82.0	61.3	42.9	59.5
E023	chr16	71679388	71679535	TRUE	OK	77.9	0.00443	0.8313	0.9566	-0.027	-0.014	89.6	78.2	93.1	87.0	48.2	71.6
E024	chr16	71681750	71681854	TRUE	OK	72.3	0.0329	0.3774	0.8015	-0.231	-0.115	102.4	66.3	87.6	83.0	27.2	67.6
E025	chr16	71681854	71681905	TRUE	OK	62.5	0.0212	0.388	0.8054	-0.225	-0.112	91.3	56.4	73.2	59.3	28.3	66.6
E026	chr16	71684475	71684601	TRUE	OK	67.4	0.00874	0.7938	0.946	-0.050	-0.025	87.9	66.3	72.1	55.3	45.0	77.7
E027	chr16	71684601	71684657	FALSE	LOW_COUNTS_INDEP_FILTER	3.0	0.0509	0.2017	NA	NA	NA	4.3	3.0	5.5	1.0	0.0	4.0
E028	chr16	71690518	71690709	TRUE	OK	77.1	0.00826	0.6757	0.9096	-0.066	-0.033	93.0	83.1	84.2	64.2	45.0	92.8
E029	chr16	71702597	71702731	TRUE	OK	48.0	0.00636	0.3005	0.7716	0.238	0.119	52.9	40.6	54.3	58.3	30.4	51.4
E030	chr16	71714511	71714801	TRUE	OK	74.2	0.00348	0.7574	0.9352	0.063	0.031	84.4	77.2	79.8	81.0	46.1	76.7
E031	chr16	71714801	71715529	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.0606	0.7122	NA	NA	NA	3.4	2.0	2.2	3.0	0.0	2.0
E032	chr16	71723768	71723812	TRUE	OK	34.2	0.0069	0.3118	0.776	0.248	0.124	42.6	32.7	28.8	33.6	27.2	40.3
E033	chr16	71723812	71723882	TRUE	OK	28.5	0.00909	0.5117	0.8522	0.170	0.085	32.4	35.6	21.1	28.7	26.2	27.2
E034	chr16	71724328	71724701	TRUE	OK	5.1	0.076	0.4647	0.8351	-0.496	-0.248	6.0	7.9	5.5	0.0	5.2	6.1
J035	chr16	71638383	71640521	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0793	0.3017	NA	NA	NA	0.9	3.0	2.2	0.0	0.0	2.0
J036	chr16	71641040	71644750	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J037	chr16	71641040	71652789	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.407	0.8946	NA	NA	NA	3.4	0.0	0.0	1.0	0.0	1.0
J038	chr16	71644855	71652789	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J039	chr16	71650044	71652789	TRUE	OK	44.8	0.00405	0.8509	0.9623	0.050	0.025	42.6	53.4	51.0	51.4	26.2	44.4
J040	chr16	71653021	71655239	TRUE	OK	50.2	0.0116	0.1867	0.7151	-0.298	-0.149	64.8	54.4	62.1	55.3	21.0	43.4
J041	chr16	71655434	71656570	TRUE	OK	43.9	0.0181	0.2408	0.7456	-0.307	-0.153	49.5	45.5	64.3	32.6	19.9	51.4
J042	chr16	71656681	71658232	TRUE	OK	42.6	0.0149	0.7799	0.942	0.106	0.053	50.3	35.6	51.0	49.4	21.0	48.4
J043	chr16	71658363	71658652	TRUE	OK	40.8	0.0139	0.1042	0.6404	0.466	0.233	34.1	32.7	49.9	55.3	25.1	47.4
J044	chr16	71658815	71663898	TRUE	OK	39.8	0.0169	0.9156	0.9799	0.045	0.023	30.7	53.4	46.6	46.4	22.0	39.3
J045	chr16	71658815	71667177	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.0661	0.5768	NA	NA	NA	3.4	1.0	1.1	1.0	1.0	1.0
J046	chr16	71664099	71667177	TRUE	OK	34.8	0.0753	0.7947	0.9463	0.291	0.145	26.4	34.6	44.3	48.4	9.4	45.4
J047	chr16	71667333	71669274	TRUE	OK	48.9	0.0288	0.7684	0.9386	0.172	0.086	58.0	44.5	51.0	63.3	19.9	56.5
J048	chr16	71669370	71672261	TRUE	OK	49.5	0.0113	0.2321	0.7414	0.322	0.161	53.7	46.5	47.7	69.2	29.3	50.4
J049	chr16	71672322	71676446	TRUE	OK	47.6	0.0041	0.3254	0.7817	0.209	0.105	55.4	46.5	45.5	56.3	29.3	52.5
J050	chr16	71676649	71678754	TRUE	OK	42.1	0.012	0.6896	0.9141	0.105	0.053	54.6	47.5	32.1	41.5	27.2	49.4
J051	chr16	71678985	71679388	TRUE	OK	46.1	0.00349	0.8989	0.9756	0.027	0.014	46.9	48.5	56.5	47.4	37.7	39.3
J052	chr16	71679535	71681750	TRUE	OK	44.0	0.0336	0.6988	0.9167	-0.060	-0.030	57.1	41.6	49.9	58.3	16.8	40.3
J053	chr16	71681905	71684475	TRUE	OK	43.7	0.0121	0.5032	0.8489	-0.171	-0.086	62.3	37.6	52.1	41.5	25.1	43.4
J054	chr16	71684601	71690518	TRUE	OK	40.9	0.00727	0.6642	0.9058	-0.093	-0.046	51.2	42.6	45.5	30.6	26.2	49.4
J055	chr16	71690709	71702597	TRUE	OK	24.6	0.0062	0.6208	0.8908	0.149	0.075	26.4	21.8	29.9	27.7	12.6	29.3
J056	chr16	71702731	71714511	TRUE	OK	25.8	0.0131	0.6549	0.9025	-0.116	-0.058	35.0	23.8	29.9	30.6	11.5	24.2
J057	chr16	71714801	71723768	TRUE	OK	25.7	0.00441	0.1601	0.696	0.368	0.184	27.3	23.8	24.4	28.7	19.9	30.3
J058	chr16	71714801	71724328	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N059	chr16	71629494	71640389	TRUE	OK	101.7	0.00249	4.558e-06	0.001279	-0.689	-0.345	126.2	137.6	139.7	69.2	68.1	69.6

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000040199.18
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE