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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr1 | 173858558 | 173859305 | TRUE | OK | 308.5 | 0.0062 | 0.6391 | 0.9008 | 0.074 | 0.037 | 315.5 | 366.0 | 299.1 | 323.6 | 274.2 | 272.6 |
E002 | chr1 | 173863899 | 173863900 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.3 | 0.061 | 0.3879 | NA | NA | NA | 7.9 | 4.2 | 2.0 | 7.9 | 5.9 | 3.9 |
E003 | chr1 | 173863900 | 173863901 | TRUE | OK | 38.1 | 0.018 | 0.4911 | 0.853 | 0.180 | 0.090 | 26.6 | 58.4 | 32.2 | 29.8 | 46.0 | 35.8 |
E004 | chr1 | 173863901 | 173863903 | TRUE | OK | 47.6 | 0.0125 | 0.4394 | 0.836 | 0.174 | 0.087 | 34.5 | 70.9 | 41.3 | 44.7 | 52.9 | 41.6 |
E005 | chr1 | 173863903 | 173863910 | TRUE | OK | 157.8 | 0.0049 | 0.1069 | 0.7045 | 0.231 | 0.115 | 127.2 | 206.5 | 143.0 | 162.8 | 155.7 | 151.8 |
E006 | chr1 | 173863910 | 173863930 | TRUE | OK | 315.6 | 0.00687 | 0.4597 | 0.8428 | 0.100 | 0.050 | 294.8 | 424.4 | 276.0 | 318.7 | 284.0 | 295.9 |
E007 | chr1 | 173863930 | 173863953 | TRUE | OK | 622.2 | 0.00776 | 0.7113 | 0.9234 | -0.075 | -0.037 | 591.6 | 888.4 | 589.2 | 596.7 | 516.1 | 551.1 |
E008 | chr1 | 173863953 | 173863979 | TRUE | OK | 927.6 | 0.00673 | 0.5581 | 0.8741 | -0.103 | -0.051 | 874.6 | 1330.5 | 902.5 | 861.7 | 786.4 | 810.2 |
E009 | chr1 | 173863979 | 173864015 | TRUE | OK | 1725.6 | 0.00586 | 0.6518 | 0.905 | 0.041 | 0.020 | 1610.2 | 2350.3 | 1590.4 | 1582.5 | 1638.3 | 1581.7 |
E010 | chr1 | 173864015 | 173864033 | TRUE | OK | 1932.0 | 0.00662 | 0.6205 | 0.8947 | 0.048 | 0.024 | 1789.6 | 2649.6 | 1765.7 | 1773.1 | 1834.2 | 1779.9 |
E011 | chr1 | 173864033 | 173864075 | TRUE | OK | 2370.6 | 0.0056 | 0.7507 | 0.9355 | 0.024 | 0.012 | 2230.4 | 3205.3 | 2229.0 | 2182.2 | 2196.5 | 2180.2 |
E012 | chr1 | 173864075 | 173864256 | TRUE | OK | 472.3 | 0.00704 | 3.322e-07 | 0.0003345 | -0.787 | -0.393 | 549.2 | 797.7 | 541.9 | 320.7 | 340.8 | 283.3 |
E013 | chr1 | 173864256 | 173864304 | TRUE | OK | 3418.5 | 0.0038 | 0.009234 | 0.3818 | 0.263 | 0.131 | 3053.7 | 4285.6 | 3131.5 | 3204.7 | 3416.7 | 3418.7 |
E014 | chr1 | 173864304 | 173864483 | TRUE | OK | 1029.8 | 0.00247 | 3.117e-16 | 2.209e-12 | -0.760 | -0.380 | 1130.0 | 1645.4 | 1284.2 | 658.2 | 753.1 | 707.7 |
E015 | chr1 | 173864483 | 173864506 | TRUE | OK | 3268.4 | 0.00205 | 0.0001075 | 0.03271 | 0.300 | 0.150 | 2905.8 | 3960.2 | 3042.8 | 3101.5 | 3236.5 | 3363.6 |
E016 | chr1 | 173864506 | 173864630 | TRUE | OK | 1043.4 | 0.00116 | 5.705e-28 | 1.559e-23 | -0.759 | -0.379 | 1201.0 | 1564.1 | 1346.7 | 689.0 | 685.5 | 774.4 |
E017 | chr1 | 173864630 | 173864674 | TRUE | OK | 735.5 | 0.000934 | 3.567e-22 | 6.5e-18 | -0.665 | -0.333 | 823.3 | 1084.4 | 943.8 | 490.4 | 517.1 | 554.0 |
E018 | chr1 | 173864674 | 173864704 | TRUE | OK | 3682.0 | 0.00142 | 4.686e-10 | 1.128e-06 | 0.414 | 0.207 | 3217.3 | 4299.1 | 3396.4 | 3530.4 | 3736.9 | 3911.8 |
E019 | chr1 | 173864704 | 173864871 | TRUE | OK | 911.7 | 0.00147 | 2.242e-10 | 5.877e-07 | -0.477 | -0.239 | 1032.4 | 1221.0 | 1118.0 | 662.2 | 681.6 | 755.1 |
E020 | chr1 | 173864871 | 173864901 | TRUE | OK | 519.9 | 0.00286 | 6.46e-07 | 0.0005872 | -0.509 | -0.254 | 604.4 | 694.5 | 647.6 | 343.5 | 385.8 | 443.8 |
E021 | chr1 | 173864901 | 173864905 | TRUE | OK | 335.1 | 0.00343 | 2.241e-10 | 5.877e-07 | -0.745 | -0.372 | 410.2 | 465.1 | 455.3 | 195.6 | 225.2 | 259.1 |
E022 | chr1 | 173864905 | 173864906 | TRUE | OK | 347.5 | 0.00388 | 1.766e-09 | 3.576e-06 | -0.733 | -0.366 | 432.9 | 472.4 | 470.4 | 205.5 | 236.0 | 267.8 |
E023 | chr1 | 173864906 | 173864954 | TRUE | OK | 404.6 | 0.00377 | 5.071e-09 | 8.985e-06 | -0.689 | -0.344 | 496.9 | 545.3 | 541.9 | 250.2 | 274.2 | 319.1 |
E024 | chr1 | 173864954 | 173865167 | TRUE | OK | 565.2 | 0.00557 | 1.646e-05 | 0.008168 | -0.569 | -0.284 | 708.9 | 720.5 | 716.1 | 370.3 | 404.4 | 470.8 |
E025 | chr1 | 173865167 | 173865228 | TRUE | OK | 410.9 | 0.0063 | 0.0006712 | 0.1053 | -0.483 | -0.242 | 514.7 | 498.4 | 516.7 | 280.0 | 309.5 | 346.1 |
E026 | chr1 | 173865228 | 173865243 | TRUE | OK | 3482.9 | 0.00116 | 7.783e-17 | 6.475e-13 | 0.513 | 0.256 | 3014.2 | 3902.9 | 3133.5 | 3410.2 | 3626.3 | 3810.3 |
E027 | chr1 | 173865243 | 173865248 | TRUE | OK | 3367.9 | 0.00113 | 1.762e-16 | 1.322e-12 | 0.502 | 0.251 | 2910.7 | 3772.6 | 3041.8 | 3272.2 | 3507.8 | 3702.0 |
E028 | chr1 | 173865248 | 173865282 | TRUE | OK | 3793.6 | 0.00205 | 4.342e-11 | 1.308e-07 | 0.520 | 0.260 | 3288.3 | 4298.1 | 3396.4 | 3683.2 | 3878.9 | 4216.4 |
E029 | chr1 | 173865282 | 173865352 | TRUE | OK | 451.1 | 0.00868 | 0.002838 | 0.228 | -0.485 | -0.242 | 544.3 | 532.8 | 602.3 | 318.7 | 385.8 | 322.9 |
E030 | chr1 | 173865352 | 173865470 | TRUE | OK | 493.4 | 0.00539 | 1.215e-05 | 0.006476 | -0.582 | -0.291 | 587.7 | 613.1 | 679.9 | 336.6 | 359.4 | 383.8 |
E031 | chr1 | 173865470 | 173865509 | TRUE | OK | 2311.4 | 0.00159 | 1.453e-05 | 0.007411 | 0.311 | 0.155 | 2063.7 | 2710.0 | 2153.4 | 2170.2 | 2273.9 | 2497.3 |
E032 | chr1 | 173865509 | 173865547 | TRUE | OK | 3913.6 | 0.00232 | 8.162e-10 | 1.816e-06 | 0.511 | 0.255 | 3391.9 | 4455.5 | 3528.3 | 3811.3 | 3943.6 | 4350.8 |
E033 | chr1 | 173865547 | 173865817 | TRUE | OK | 290.3 | 0.0105 | 1.624e-05 | 0.008094 | -0.796 | -0.398 | 365.8 | 373.3 | 427.1 | 217.4 | 174.3 | 183.7 |
E034 | chr1 | 173865817 | 173865856 | TRUE | OK | 129.1 | 0.018 | 0.0004456 | 0.08285 | -0.865 | -0.432 | 181.4 | 148.1 | 198.4 | 72.5 | 72.5 | 101.5 |
E035 | chr1 | 173865856 | 173865866 | TRUE | OK | 3534.0 | 0.0022 | 4.681e-08 | 6.33e-05 | 0.443 | 0.221 | 3062.5 | 4086.4 | 3231.2 | 3428.1 | 3510.7 | 3884.7 |
E036 | chr1 | 173865866 | 173865894 | TRUE | OK | 4301.0 | 0.00173 | 2.699e-15 | 1.666e-11 | 0.576 | 0.288 | 3685.7 | 4813.2 | 3904.0 | 4222.3 | 4390.1 | 4790.7 |
E037 | chr1 | 173865894 | 173865952 | TRUE | OK | 252.9 | 0.00606 | 2.19e-06 | 0.001599 | -0.707 | -0.354 | 324.4 | 328.5 | 343.5 | 160.8 | 195.9 | 164.4 |
E038 | chr1 | 173865952 | 173866176 | TRUE | OK | 399.3 | 0.00681 | 0.0003173 | 0.06683 | -0.529 | -0.264 | 491.0 | 497.4 | 515.7 | 255.1 | 338.8 | 297.8 |
E039 | chr1 | 173866176 | 173866206 | TRUE | OK | 4331.5 | 0.00236 | 2.008e-13 | 9.606e-10 | 0.619 | 0.309 | 3733.0 | 4771.5 | 3874.8 | 4302.7 | 4412.6 | 4894.1 |
E040 | chr1 | 173866206 | 173866215 | TRUE | OK | 118.8 | 0.0033 | 0.04977 | 0.6248 | -0.279 | -0.140 | 139.0 | 151.2 | 129.9 | 90.3 | 107.7 | 94.7 |
E041 | chr1 | 173866215 | 173866527 | TRUE | OK | 285.0 | 0.00742 | 0.02598 | 0.531 | -0.351 | -0.176 | 334.3 | 322.2 | 369.7 | 232.3 | 224.3 | 227.2 |
E042 | chr1 | 173866527 | 173866567 | TRUE | OK | 4165.1 | 0.00136 | 3.497e-22 | 6.5e-18 | 0.639 | 0.319 | 3569.4 | 4406.5 | 3835.5 | 4173.7 | 4313.7 | 4692.1 |
E043 | chr1 | 173866567 | 173866760 | TRUE | OK | 602.7 | 0.0111 | 0.07609 | 0.6723 | -0.308 | -0.154 | 683.3 | 668.4 | 787.6 | 404.1 | 555.3 | 517.3 |
E044 | chr1 | 173866760 | 173866796 | TRUE | OK | 3670.7 | 0.00161 | 2.464e-17 | 2.3e-13 | 0.607 | 0.303 | 3154.2 | 3826.8 | 3401.4 | 3665.4 | 3805.5 | 4170.9 |
E045 | chr1 | 173866796 | 173866990 | TRUE | OK | 165.5 | 0.0111 | 0.3558 | 0.8094 | -0.164 | -0.082 | 183.4 | 191.9 | 190.4 | 132.0 | 177.2 | 118.0 |
E046 | chr1 | 173866990 | 173867030 | TRUE | OK | 3139.2 | 0.00229 | 7.956e-12 | 3.044e-08 | 0.578 | 0.289 | 2727.3 | 3234.5 | 2891.7 | 3185.9 | 3207.1 | 3588.9 |
E047 | chr1 | 173867030 | 173867040 | TRUE | OK | 2150.8 | 0.00131 | 5.257e-18 | 5.294e-14 | 0.581 | 0.290 | 1800.5 | 2169.9 | 1978.2 | 2209.9 | 2272.9 | 2473.2 |
E048 | chr1 | 173867040 | 173867043 | TRUE | OK | 1753.1 | 0.00138 | 2.486e-15 | 1.56e-11 | 0.551 | 0.275 | 1449.4 | 1787.2 | 1620.6 | 1785.0 | 1835.2 | 2041.0 |
E049 | chr1 | 173867043 | 173867045 | TRUE | OK | 95.3 | 0.00647 | 0.2273 | 0.7679 | -0.206 | -0.103 | 99.6 | 114.7 | 115.8 | 62.5 | 97.9 | 81.2 |
E050 | chr1 | 173867045 | 173867154 | TRUE | OK | 75.2 | 0.0145 | 0.0196 | 0.4883 | -0.563 | -0.281 | 100.6 | 79.2 | 106.8 | 46.7 | 57.8 | 59.9 |
E051 | chr1 | 173867154 | 173867689 | TRUE | OK | 340.0 | 0.0161 | 0.2311 | 0.7696 | -0.260 | -0.130 | 431.9 | 333.7 | 428.1 | 254.2 | 282.0 | 310.4 |
E052 | chr1 | 173867689 | 173867721 | TRUE | OK | 133.6 | 0.0157 | 0.1835 | 0.7504 | -0.298 | -0.149 | 165.6 | 136.6 | 172.2 | 109.2 | 91.1 | 126.7 |
E053 | chr1 | 173867721 | 173867729 | TRUE | OK | 94.6 | 0.026 | 0.1128 | 0.7106 | -0.471 | -0.235 | 116.3 | 89.7 | 146.0 | 70.5 | 58.8 | 86.0 |
E054 | chr1 | 173867729 | 173867815 | TRUE | OK | 131.9 | 0.0404 | 0.06223 | 0.6507 | -0.697 | -0.348 | 165.6 | 114.7 | 238.7 | 87.4 | 78.3 | 106.4 |
E055 | chr1 | 173867959 | 173867980 | TRUE | OK | 1648.5 | 0.00133 | 2.172e-16 | 1.598e-12 | 0.566 | 0.283 | 1360.7 | 1673.6 | 1501.8 | 1687.7 | 1734.3 | 1932.7 |
E056 | chr1 | 173867980 | 173867983 | TRUE | OK | 47.5 | 0.0153 | 0.122 | 0.7177 | 0.418 | 0.209 | 30.6 | 52.1 | 51.4 | 40.7 | 65.6 | 44.5 |
E057 | chr1 | 173867983 | 173867987 | TRUE | OK | 35.3 | 0.0158 | 0.0514 | 0.6287 | 0.563 | 0.281 | 19.7 | 40.7 | 34.2 | 28.8 | 49.9 | 38.7 |
E058 | chr1 | 173867987 | 173867988 | TRUE | OK | 12.7 | 0.0163 | 0.0348 | 0.5732 | 0.845 | 0.422 | 7.9 | 12.5 | 10.1 | 10.9 | 21.5 | 13.5 |
E059 | chr1 | 173867988 | 173867989 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.1 | 0.0215 | 0.1372 | NA | NA | NA | 5.9 | 7.3 | 7.1 | 5.0 | 12.7 | 10.6 |
E060 | chr1 | 173867989 | 173867991 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.9 | 0.0302 | 0.05951 | NA | NA | NA | 4.9 | 5.2 | 5.0 | 4.0 | 12.7 | 9.7 |
E061 | chr1 | 173867991 | 173868009 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.4 | 0.0413 | 0.08857 | NA | NA | NA | 4.9 | 4.2 | 5.0 | 3.0 | 11.8 | 9.7 |
E062 | chr1 | 173868753 | 173868882 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.7 | 0.154 | 0.3105 | NA | NA | NA | 7.9 | 4.2 | 3.0 | 5.0 | 2.0 | 0.0 |
J063 | chr1 | 173859305 | 173864256 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0665 | 0.8296 | NA | NA | NA | 6.9 | 5.2 | 1.0 | 4.0 | 3.9 | 1.9 |
J064 | chr1 | 173864075 | 173864256 | TRUE | OK | 2032.3 | 0.00448 | 0.2222 | 0.7657 | 0.125 | 0.063 | 1855.7 | 2669.4 | 1869.4 | 1910.1 | 1949.7 | 1939.5 |
J065 | chr1 | 173864304 | 173864483 | TRUE | OK | 2473.3 | 0.00141 | 1.902e-15 | 1.213e-11 | 0.537 | 0.268 | 2066.7 | 2771.5 | 2133.3 | 2522.7 | 2638.2 | 2707.1 |
J066 | chr1 | 173864304 | 173864674 | TRUE | OK | 111.7 | 0.0107 | 0.3114 | 0.7948 | -0.241 | -0.121 | 101.6 | 185.6 | 103.7 | 89.4 | 96.0 | 93.8 |
J067 | chr1 | 173864304 | 173865470 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.6 | 0.132 | 0.4108 | NA | NA | NA | 3.9 | 4.2 | 3.0 | 10.9 | 1.0 | 4.8 |
J068 | chr1 | 173864506 | 173864674 | TRUE | OK | 2339.6 | 0.00132 | 8.102e-21 | 1.292e-16 | 0.618 | 0.309 | 1925.7 | 2539.0 | 1958.0 | 2424.4 | 2567.7 | 2623.0 |
J069 | chr1 | 173864704 | 173865228 | TRUE | OK | 2688.4 | 0.00126 | 2.079e-19 | 2.651e-15 | 0.580 | 0.290 | 2221.5 | 2978.0 | 2315.6 | 2706.3 | 2876.1 | 3033.0 |
J070 | chr1 | 173864704 | 173865509 | TRUE | OK | 12.7 | 0.0126 | 0.2736 | 0.783 | -0.421 | -0.210 | 10.8 | 14.6 | 21.2 | 8.9 | 11.8 | 8.7 |
J071 | chr1 | 173865282 | 173865470 | TRUE | OK | 1750.3 | 0.00251 | 3.27e-08 | 4.617e-05 | 0.487 | 0.243 | 1440.6 | 2005.1 | 1501.8 | 1704.6 | 1825.4 | 2024.6 |
J072 | chr1 | 173865282 | 173865509 | TRUE | OK | 1401.5 | 0.00176 | 1.161e-13 | 5.695e-10 | 0.573 | 0.287 | 1131.0 | 1534.9 | 1164.3 | 1440.5 | 1492.4 | 1645.6 |
J073 | chr1 | 173865282 | 173866527 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.414 | 0.5282 | NA | NA | NA | 0.0 | 1.0 | 4.0 | 0.0 | 0.0 | 1.9 |
J074 | chr1 | 173865547 | 173865856 | TRUE | OK | 3211.5 | 0.00277 | 3.98e-08 | 5.499e-05 | 0.495 | 0.247 | 2704.6 | 3730.9 | 2833.3 | 3113.4 | 3270.8 | 3616.0 |
J075 | chr1 | 173865894 | 173866176 | TRUE | OK | 3520.2 | 0.00177 | 5.22e-16 | 3.567e-12 | 0.599 | 0.299 | 2953.1 | 3894.6 | 3100.2 | 3492.6 | 3652.7 | 4027.8 |
J076 | chr1 | 173865952 | 173866176 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.1 | 0.0312 | 0.3249 | NA | NA | NA | 4.9 | 16.7 | 9.1 | 7.9 | 4.9 | 4.8 |
J077 | chr1 | 173866206 | 173866527 | TRUE | OK | 3744.6 | 0.00194 | 4.67e-17 | 4.061e-13 | 0.650 | 0.325 | 3191.7 | 3966.5 | 3337.9 | 3821.2 | 3843.7 | 4306.3 |
J078 | chr1 | 173866567 | 173866760 | TRUE | OK | 3346.1 | 0.00115 | 9.312e-29 | 2.969e-24 | 0.689 | 0.344 | 2769.7 | 3457.7 | 2979.4 | 3451.9 | 3525.4 | 3892.5 |
J079 | chr1 | 173866796 | 173866990 | TRUE | OK | 3092.4 | 0.0019 | 1.518e-14 | 8.417e-11 | 0.596 | 0.298 | 2665.2 | 3177.2 | 2829.3 | 3154.1 | 3175.8 | 3553.1 |
J080 | chr1 | 173867043 | 173867154 | TRUE | OK | 30.1 | 0.00761 | 0.1158 | 0.7128 | 0.421 | 0.210 | 30.6 | 25.0 | 29.2 | 23.8 | 37.2 | 34.8 |
J081 | chr1 | 173867043 | 173867721 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.8 | 0.159 | 0.06339 | NA | NA | NA | 7.9 | 3.1 | 12.1 | 4.0 | 2.0 | 0.0 |
J082 | chr1 | 173867043 | 173867959 | TRUE | OK | 1614.0 | 0.000972 | 6.954e-22 | 1.157e-17 | 0.590 | 0.295 | 1318.3 | 1640.2 | 1447.4 | 1662.9 | 1706.9 | 1908.5 |
J083 | chr1 | 173867043 | 173867980 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.0382 | 0.488 | NA | NA | NA | 2.0 | 5.2 | 1.0 | 2.0 | 4.9 | 2.9 |
J084 | chr1 | 173868009 | 173868753 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.121 | 0.7844 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 1.0 | 1.0 | 0.0 |
N085 | chr1 | 173864079 | 173864256 | TRUE | OK | 42.0 | 0.00628 | 0.5559 | 0.8735 | 0.127 | 0.064 | 32.5 | 58.4 | 40.3 | 44.7 | 33.3 | 42.5 |
N086 | chr1 | 173864502 | 173864674 | TRUE | OK | 20.6 | 0.00862 | 0.6245 | 0.8961 | 0.151 | 0.075 | 16.8 | 19.8 | 27.2 | 22.8 | 16.6 | 20.3 |
N087 | chr1 | 173866206 | 173866990 | TRUE | OK | 12.0 | 0.00912 | 0.2277 | 0.7682 | -0.456 | -0.228 | 10.8 | 16.7 | 17.1 | 6.9 | 9.8 | 10.6 |
N088 | chr1 | 173866581 | 173866760 | TRUE | OK | 47.1 | 0.0164 | 0.6775 | 0.9128 | -0.123 | -0.062 | 53.2 | 69.9 | 36.3 | 36.7 | 50.9 | 35.8 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000234741.8 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |