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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr16 | 3611727 | 3612006 | TRUE | OK | 51.2 | 0.0522 | 0.01601 | 0.4581 | 0.986 | 0.493 | 33.5 | 19.8 | 51.4 | 58.6 | 73.4 | 70.6 |
E002 | chr16 | 3640714 | 3641237 | TRUE | OK | 70.7 | 0.086 | 0.01351 | 0.4324 | 1.208 | 0.604 | 52.3 | 17.7 | 60.4 | 85.4 | 98.9 | 109.3 |
E003 | chr16 | 3642879 | 3642891 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.352 | 0.09569 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 2.9 | 0.0 |
E004 | chr16 | 3642891 | 3642937 | TRUE | OK | 17.6 | 0.104 | 0.06857 | 0.6605 | 1.036 | 0.518 | 20.7 | 3.1 | 11.1 | 22.8 | 20.6 | 27.1 |
E005 | chr16 | 3642937 | 3643036 | TRUE | OK | 22.0 | 0.0809 | 0.07345 | 0.6682 | 0.883 | 0.442 | 28.6 | 7.3 | 11.1 | 29.8 | 24.5 | 30.9 |
E006 | chr16 | 3651316 | 3651836 | TRUE | OK | 58.4 | 0.0373 | 0.4534 | 0.8405 | 0.278 | 0.139 | 71.0 | 39.6 | 49.4 | 77.4 | 47.0 | 65.7 |
E007 | chr16 | 3651836 | 3651921 | TRUE | OK | 30.3 | 0.055 | 0.5907 | 0.8849 | 0.347 | 0.174 | 26.6 | 27.1 | 27.2 | 35.7 | 14.7 | 50.3 |
E008 | chr16 | 3651921 | 3652114 | TRUE | OK | 37.7 | 0.035 | 0.3683 | 0.8129 | 0.390 | 0.195 | 28.6 | 32.3 | 38.3 | 38.7 | 26.4 | 61.9 |
E009 | chr16 | 3652114 | 3654666 | TRUE | OK | 201.0 | 0.00933 | 0.03551 | 0.5766 | 0.397 | 0.198 | 173.5 | 165.8 | 189.4 | 214.4 | 216.4 | 246.5 |
E010 | chr16 | 3654666 | 3654825 | TRUE | OK | 37.2 | 0.00657 | 0.0323 | 0.5625 | 0.517 | 0.259 | 34.5 | 29.2 | 29.2 | 44.7 | 38.2 | 47.4 |
E011 | chr16 | 3654825 | 3654859 | TRUE | OK | 30.9 | 0.0174 | 0.04899 | 0.6228 | 0.626 | 0.313 | 22.7 | 30.2 | 21.2 | 37.7 | 24.5 | 49.3 |
E012 | chr16 | 3654859 | 3654960 | TRUE | OK | 33.2 | 0.014 | 0.005254 | 0.3024 | 0.827 | 0.414 | 24.7 | 24.0 | 24.2 | 42.7 | 30.4 | 53.2 |
E013 | chr16 | 3654960 | 3655044 | TRUE | OK | 40.5 | 0.0264 | 0.0004229 | 0.08052 | 1.181 | 0.590 | 35.5 | 24.0 | 16.1 | 67.5 | 47.0 | 53.2 |
E014 | chr16 | 3655372 | 3655520 | TRUE | OK | 54.1 | 0.0181 | 0.0004413 | 0.08245 | 1.000 | 0.500 | 45.4 | 30.2 | 34.2 | 84.4 | 67.6 | 62.8 |
E015 | chr16 | 3655848 | 3655937 | TRUE | OK | 19.6 | 0.0159 | 0.8447 | 0.9617 | 0.082 | 0.041 | 20.7 | 17.7 | 19.1 | 26.8 | 15.7 | 17.4 |
E016 | chr16 | 3655937 | 3655966 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.9 | 0.0198 | 0.6849 | NA | NA | NA | 7.9 | 6.3 | 11.1 | 10.9 | 7.8 | 9.7 |
E017 | chr16 | 3655966 | 3656056 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.9 | 0.0215 | 0.9497 | NA | NA | NA | 10.8 | 6.3 | 10.1 | 10.9 | 6.9 | 8.7 |
E018 | chr16 | 3656069 | 3656101 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.4 | 0.0203 | 0.9482 | NA | NA | NA | 10.8 | 7.3 | 7.1 | 9.9 | 5.9 | 9.7 |
E019 | chr16 | 3656101 | 3656118 | TRUE | OK | 37.0 | 0.0192 | 0.06415 | 0.6538 | 0.562 | 0.281 | 41.4 | 26.1 | 23.2 | 38.7 | 46.0 | 46.4 |
E020 | chr16 | 3656118 | 3656163 | TRUE | OK | 39.0 | 0.00725 | 0.06019 | 0.6489 | 0.454 | 0.227 | 38.5 | 34.4 | 27.2 | 36.7 | 49.9 | 47.4 |
E021 | chr16 | 3656163 | 3656185 | TRUE | OK | 36.2 | 0.0114 | 0.1381 | 0.7286 | 0.397 | 0.198 | 40.4 | 31.3 | 23.2 | 37.7 | 45.0 | 39.6 |
E022 | chr16 | 3656637 | 3656710 | TRUE | OK | 44.0 | 0.0114 | 0.1431 | 0.7316 | 0.379 | 0.190 | 47.3 | 34.4 | 34.2 | 44.7 | 54.8 | 48.3 |
E023 | chr16 | 3656710 | 3656753 | TRUE | OK | 43.6 | 0.0165 | 0.2125 | 0.7624 | 0.361 | 0.180 | 45.4 | 30.2 | 40.3 | 44.7 | 53.9 | 47.4 |
E024 | chr16 | 3656963 | 3656998 | TRUE | OK | 15.5 | 0.0539 | 0.04444 | 0.6087 | 1.007 | 0.504 | 6.9 | 7.3 | 17.1 | 13.9 | 24.5 | 23.2 |
E025 | chr16 | 3656998 | 3657047 | TRUE | OK | 41.2 | 0.0129 | 0.3605 | 0.8109 | 0.252 | 0.126 | 34.5 | 33.4 | 46.3 | 43.7 | 48.0 | 41.6 |
E026 | chr16 | 3657047 | 3657111 | TRUE | OK | 41.5 | 0.0267 | 0.3676 | 0.8128 | 0.297 | 0.149 | 34.5 | 28.2 | 50.4 | 41.7 | 48.0 | 46.4 |
E027 | chr16 | 3657111 | 3657186 | TRUE | OK | 28.7 | 0.0359 | 0.444 | 0.8376 | 0.320 | 0.160 | 29.6 | 17.7 | 30.2 | 22.8 | 40.2 | 31.9 |
E028 | chr16 | 3657186 | 3657224 | TRUE | OK | 36.8 | 0.0727 | 0.2085 | 0.7609 | 0.583 | 0.292 | 34.5 | 13.6 | 41.3 | 39.7 | 52.9 | 38.7 |
E029 | chr16 | 3657224 | 3657249 | TRUE | OK | 36.1 | 0.0682 | 0.2503 | 0.7755 | 0.539 | 0.270 | 36.5 | 14.6 | 38.3 | 35.7 | 54.8 | 36.7 |
E030 | chr16 | 3657249 | 3657271 | TRUE | OK | 35.3 | 0.0438 | 0.1135 | 0.7114 | 0.649 | 0.325 | 35.5 | 16.7 | 31.2 | 35.7 | 53.9 | 38.7 |
E031 | chr16 | 3657271 | 3657341 | TRUE | OK | 41.7 | 0.0373 | 0.08451 | 0.6828 | 0.651 | 0.326 | 37.5 | 20.9 | 40.3 | 42.7 | 60.7 | 48.3 |
E032 | chr16 | 3657719 | 3657744 | TRUE | OK | 33.3 | 0.0209 | 0.08275 | 0.6809 | 0.566 | 0.283 | 33.5 | 19.8 | 28.2 | 32.8 | 41.1 | 44.5 |
E033 | chr16 | 3657744 | 3657789 | TRUE | OK | 37.3 | 0.0248 | 0.05565 | 0.6391 | 0.638 | 0.319 | 38.5 | 20.9 | 29.2 | 38.7 | 45.0 | 51.2 |
E034 | chr16 | 3657789 | 3657816 | TRUE | OK | 32.0 | 0.0119 | 0.06468 | 0.6547 | 0.528 | 0.264 | 31.6 | 22.9 | 25.2 | 36.7 | 31.3 | 44.5 |
E035 | chr16 | 3657816 | 3657827 | TRUE | OK | 20.3 | 0.0385 | 0.3333 | 0.8019 | 0.435 | 0.217 | 18.7 | 11.5 | 22.2 | 21.8 | 16.6 | 30.9 |
E036 | chr16 | 3657827 | 3657857 | TRUE | OK | 21.9 | 0.0307 | 0.1552 | 0.7368 | 0.580 | 0.290 | 19.7 | 12.5 | 21.2 | 25.8 | 18.6 | 33.8 |
E037 | chr16 | 3657857 | 3657867 | TRUE | OK | 19.0 | 0.0328 | 0.184 | 0.7504 | 0.570 | 0.285 | 16.8 | 10.4 | 19.1 | 20.8 | 16.6 | 30.0 |
E038 | chr16 | 3657867 | 3657905 | TRUE | OK | 16.7 | 0.0192 | 0.123 | 0.7187 | 0.594 | 0.297 | 16.8 | 10.4 | 13.1 | 16.9 | 16.6 | 26.1 |
E039 | chr16 | 3657905 | 3658088 | TRUE | OK | 225.6 | 0.011 | 0.745 | 0.934 | -0.093 | -0.047 | 243.5 | 306.6 | 155.1 | 211.5 | 217.4 | 219.5 |
E040 | chr16 | 3658088 | 3658095 | TRUE | OK | 274.6 | 0.0106 | 0.1735 | 0.7455 | -0.290 | -0.145 | 291.9 | 414.0 | 206.5 | 239.3 | 254.6 | 241.7 |
E041 | chr16 | 3658095 | 3658207 | TRUE | OK | 979.6 | 0.0104 | 0.09955 | 0.6977 | -0.329 | -0.165 | 931.8 | 1509.9 | 819.9 | 919.3 | 814.8 | 881.8 |
E042 | chr16 | 3658207 | 3662645 | TRUE | OK | 3100.5 | 0.00902 | 0.23 | 0.7691 | -0.224 | -0.112 | 2761.8 | 4322.1 | 2749.7 | 2903.9 | 2933.9 | 2931.4 |
E043 | chr16 | 3662645 | 3662804 | TRUE | OK | 38.6 | 0.026 | 0.01585 | 0.4565 | 0.824 | 0.412 | 28.6 | 20.9 | 35.3 | 47.7 | 39.2 | 59.9 |
E044 | chr16 | 3662804 | 3663486 | TRUE | OK | 2896.5 | 0.0073 | 0.08112 | 0.6783 | -0.281 | -0.140 | 2661.2 | 4058.3 | 2592.6 | 2693.4 | 2655.8 | 2717.8 |
E045 | chr16 | 3663486 | 3663726 | TRUE | OK | 1707.3 | 0.000885 | 0.2602 | 0.7792 | -0.069 | -0.034 | 1586.5 | 2123.0 | 1562.2 | 1623.2 | 1680.4 | 1668.8 |
E046 | chr16 | 3663726 | 3665472 | TRUE | OK | 2615.3 | 0.000602 | 0.2725 | 0.783 | -0.055 | -0.028 | 2471.9 | 3182.4 | 2373.0 | 2487.9 | 2582.4 | 2594.0 |
E047 | chr16 | 3679748 | 3680143 | TRUE | OK | 1535.9 | 0.0123 | 0.5555 | 0.8734 | 0.127 | 0.064 | 1639.7 | 1447.3 | 1404.1 | 1580.5 | 1484.6 | 1659.1 |
J048 | chr16 | 3612006 | 3640714 | TRUE | OK | 27.7 | 0.0815 | 0.01795 | 0.4754 | 1.185 | 0.592 | 9.9 | 10.4 | 31.2 | 31.8 | 42.1 | 40.6 |
J049 | chr16 | 3641237 | 3642891 | TRUE | OK | 14.3 | 0.0616 | 0.04075 | 0.5964 | 1.066 | 0.533 | 14.8 | 3.1 | 10.1 | 16.9 | 19.6 | 21.3 |
J050 | chr16 | 3643036 | 3651316 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.2 | 0.0684 | 0.3806 | NA | NA | NA | 10.8 | 2.1 | 5.0 | 9.9 | 7.8 | 7.7 |
J051 | chr16 | 3643036 | 3654960 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.4 | 0.29 | 0.4043 | NA | NA | NA | 6.9 | 1.0 | 0.0 | 2.0 | 3.9 | 6.8 |
J052 | chr16 | 3651921 | 3654960 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.303 | 0.7794 | NA | NA | NA | 2.0 | 2.1 | 0.0 | 5.0 | 0.0 | 1.0 |
J053 | chr16 | 3655044 | 3655372 | TRUE | OK | 27.8 | 0.0196 | 3.531e-06 | 0.0024 | 1.586 | 0.793 | 18.7 | 14.6 | 9.1 | 52.6 | 33.3 | 38.7 |
J054 | chr16 | 3655520 | 3655848 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.5 | 0.0148 | 0.8557 | NA | NA | NA | 9.9 | 8.3 | 11.1 | 12.9 | 6.9 | 7.7 |
J055 | chr16 | 3655520 | 3656101 | TRUE | OK | 16.6 | 0.0697 | 0.07534 | 0.6713 | 0.907 | 0.453 | 20.7 | 6.3 | 8.1 | 17.9 | 26.4 | 20.3 |
J056 | chr16 | 3655937 | 3656101 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.3 | 0.0251 | 0.866 | NA | NA | NA | 6.9 | 12.5 | 8.1 | 14.9 | 5.9 | 7.7 |
J057 | chr16 | 3655966 | 3656101 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0549 | 0.4281 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 1.0 | 2.0 | 3.9 |
J058 | chr16 | 3656185 | 3656637 | TRUE | OK | 28.1 | 0.0175 | 0.09129 | 0.6902 | 0.537 | 0.268 | 31.6 | 17.7 | 20.1 | 32.8 | 34.3 | 31.9 |
J059 | chr16 | 3656753 | 3656963 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.4 | 0.0364 | 0.09022 | NA | NA | NA | 3.9 | 5.2 | 11.1 | 8.9 | 11.8 | 15.5 |
J060 | chr16 | 3656753 | 3656998 | TRUE | OK | 16.9 | 0.00979 | 0.9558 | 0.9897 | -0.017 | -0.008 | 21.7 | 18.8 | 11.1 | 19.9 | 14.7 | 15.5 |
J061 | chr16 | 3656753 | 3657186 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.189 | 0.2455 | NA | NA | NA | 3.9 | 0.0 | 2.0 | 0.0 | 1.0 | 1.0 |
J062 | chr16 | 3657111 | 3657186 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.8 | 0.109 | 0.1479 | NA | NA | NA | 3.0 | 3.1 | 12.1 | 14.9 | 11.8 | 7.7 |
J063 | chr16 | 3657111 | 3657224 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.113 | 0.6964 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 0.0 | 1.0 | 1.9 |
J064 | chr16 | 3657341 | 3657719 | TRUE | OK | 26.2 | 0.00778 | 0.005222 | 0.3017 | 0.786 | 0.393 | 18.7 | 16.7 | 23.2 | 26.8 | 36.2 | 35.8 |
J065 | chr16 | 3657341 | 3657789 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.158 | 0.1057 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 |
J066 | chr16 | 3657816 | 3657905 | TRUE | OK | 9.9 | 0.0282 | 0.1551 | 0.7368 | 0.672 | 0.336 | 12.8 | 5.2 | 5.0 | 10.9 | 11.8 | 13.5 |
J067 | chr16 | 3657816 | 3662645 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.292 | 0.6566 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 1.0 | 0.0 | 0.0 |
J068 | chr16 | 3657867 | 3679748 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J069 | chr16 | 3662804 | 3663486 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.326 | 0.3654 | NA | NA | NA | 2.0 | 0.0 | 3.0 | 2.0 | 0.0 | 0.0 |
N070 | chr16 | 3658230 | 3658792 | TRUE | OK | 1048.0 | 0.00881 | 0.1636 | 0.7408 | -0.264 | -0.132 | 965.3 | 1578.7 | 881.3 | 962.0 | 918.6 | 982.3 |
N071 | chr16 | 3658865 | 3661986 | TRUE | OK | 1206.0 | 0.0106 | 0.1268 | 0.7213 | -0.309 | -0.154 | 1117.1 | 1842.5 | 1022.3 | 1125.8 | 1004.7 | 1123.5 |
N072 | chr16 | 3662132 | 3662881 | TRUE | OK | 1817.6 | 0.0081 | 0.08368 | 0.6817 | -0.299 | -0.149 | 1662.4 | 2670.4 | 1609.5 | 1686.7 | 1600.1 | 1676.5 |
N073 | chr16 | 3662967 | 3663423 | TRUE | OK | 1508.8 | 0.0039 | 0.3158 | 0.7962 | -0.129 | -0.065 | 1360.7 | 2052.1 | 1324.5 | 1444.5 | 1399.4 | 1471.5 |
N074 | chr16 | 3663562 | 3664273 | TRUE | OK | 1214.3 | 0.00093 | 0.04747 | 0.6186 | -0.128 | -0.064 | 1159.5 | 1562.0 | 1096.9 | 1128.8 | 1181.0 | 1157.3 |
N075 | chr16 | 3664459 | 3665970 | TRUE | OK | 1302.4 | 0.00066 | 0.5467 | 0.8709 | -0.029 | -0.014 | 1252.2 | 1517.2 | 1211.7 | 1228.1 | 1278.0 | 1327.5 |
N076 | chr16 | 3666118 | 3671721 | TRUE | OK | 1311.3 | 0.00372 | 0.5741 | 0.8795 | -0.051 | -0.026 | 1382.4 | 1444.2 | 1205.6 | 1287.6 | 1247.6 | 1300.4 |
N077 | chr16 | 3671791 | 3672699 | TRUE | OK | 1230.7 | 0.00216 | 0.3157 | 0.7962 | -0.078 | -0.039 | 1250.3 | 1400.4 | 1163.3 | 1217.2 | 1185.9 | 1167.0 |
N078 | chr16 | 3672820 | 3674338 | TRUE | OK | 1282.3 | 0.00405 | 0.8659 | 0.9674 | 0.032 | 0.016 | 1277.9 | 1347.2 | 1225.8 | 1275.7 | 1260.3 | 1307.2 |
N079 | chr16 | 3674494 | 3675323 | TRUE | OK | 1353.9 | 0.00556 | 0.9675 | 0.9923 | 0.009 | 0.004 | 1386.3 | 1422.3 | 1284.2 | 1384.9 | 1261.3 | 1384.5 |
N080 | chr16 | 3674905 | 3675323 | TRUE | OK | 14.0 | 0.025 | 0.2534 | 0.7767 | 0.467 | 0.234 | 6.9 | 17.7 | 11.1 | 15.9 | 21.5 | 10.6 |
N081 | chr16 | 3675397 | 3676035 | TRUE | OK | 1179.3 | 0.00397 | 0.9156 | 0.9802 | 0.001 | 0.001 | 1145.7 | 1259.6 | 1167.4 | 1151.6 | 1126.2 | 1225.0 |
N082 | chr16 | 3676145 | 3677497 | TRUE | OK | 1345.5 | 0.011 | 0.9058 | 0.9775 | 0.039 | 0.019 | 1374.5 | 1297.1 | 1360.8 | 1375.0 | 1279.9 | 1385.5 |
N083 | chr16 | 3677658 | 3679718 | TRUE | OK | 1030.4 | 0.0159 | 0.7216 | 0.9266 | 0.091 | 0.045 | 1120.1 | 921.8 | 996.1 | 1079.2 | 975.4 | 1089.6 |
N084 | chr16 | 3679790 | 3685995 | TRUE | OK | 1249.2 | 0.0113 | 0.4258 | 0.8316 | 0.158 | 0.079 | 1323.2 | 1165.8 | 1124.1 | 1287.6 | 1232.9 | 1361.3 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000213918.10 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |