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Normalized Counts Table (ENSG00000180448.10)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr19	1065922	1066163	TRUE	OK	21.9	0.00797	0.6522	0.9051	0.133	0.066	17.7	20.9	25.2	24.8	21.5	21.3
E002	chr19	1066508	1066641	FALSE	LOW_COUNTS_INDEP_FILTER	4.5	0.0299	0.2277	NA	NA	NA	6.9	5.2	5.0	3.0	2.9	3.9
E003	chr19	1067165	1067316	TRUE	OK	78.8	0.0174	0.8849	0.9723	-0.015	-0.007	91.7	77.2	72.5	104.2	59.7	67.7
E004	chr19	1067316	1067318	TRUE	OK	78.2	0.0152	0.9302	0.9836	-0.003	-0.001	89.7	77.2	71.5	102.3	61.7	66.7
E005	chr19	1067318	1067326	TRUE	OK	83.0	0.0187	0.8253	0.9566	-0.043	-0.021	102.5	79.2	74.5	106.2	63.7	71.5
E006	chr19	1067326	1067495	TRUE	OK	182.9	0.00964	0.4466	0.8384	0.147	0.073	199.2	155.4	176.3	220.4	168.4	177.9
E007	chr19	1067497	1067674	FALSE	LOW_COUNTS_INDEP_FILTER	8.9	0.116	0.907	NA	NA	NA	9.9	2.1	17.1	6.0	9.8	8.7
E008	chr19	1068332	1068413	FALSE	LOW_COUNTS_INDEP_FILTER	6.5	0.0275	0.6681	NA	NA	NA	7.9	5.2	8.1	6.0	2.9	8.7
E009	chr19	1068413	1068744	TRUE	OK	335.9	0.0199	0.3432	0.8049	0.223	0.111	329.3	241.9	381.7	401.1	306.5	354.8
E010	chr19	1071220	1071358	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0793	0.6086	NA	NA	NA	0.0	2.1	3.0	3.0	1.0	2.9
E011	chr19	1071512	1071766	FALSE	LOW_COUNTS_INDEP_FILTER	1.7	0.246	0.6571	NA	NA	NA	0.0	1.0	3.0	4.0	2.0	0.0
E012	chr19	1073148	1073223	TRUE	OK	165.4	0.0296	0.4968	0.8546	0.172	0.086	146.9	110.5	218.6	199.6	149.8	167.3
E013	chr19	1073223	1073292	TRUE	OK	181.4	0.0269	0.298	0.7911	0.271	0.136	158.7	118.9	226.6	222.4	170.4	191.4
E014	chr19	1073505	1073549	TRUE	OK	147.2	0.0193	0.1613	0.7396	0.336	0.168	134.1	97.0	168.2	169.8	144.9	169.2
E015	chr19	1073549	1073582	TRUE	OK	140.8	0.00899	0.03139	0.5586	0.402	0.201	116.3	106.4	150.1	161.8	142.0	168.2
E016	chr19	1073582	1073590	TRUE	OK	130.2	0.00596	0.0019	0.1851	0.519	0.259	103.5	98.0	127.9	152.9	136.1	162.4
E017	chr19	1073590	1073673	FALSE	LOW_COUNTS_INDEP_FILTER	3.2	0.0535	0.5382	NA	NA	NA	3.0	4.2	4.0	4.0	3.9	0.0
E018	chr19	1073673	1073746	TRUE	OK	181.4	0.00598	0.001492	0.1638	0.497	0.249	133.1	147.0	184.3	220.4	193.9	209.8
E019	chr19	1073947	1074014	TRUE	OK	183.4	0.00268	0.002581	0.2177	0.374	0.187	140.0	181.4	170.2	220.4	186.1	202.1
E020	chr19	1074103	1074241	TRUE	OK	263.8	0.00176	0.1018	0.6995	0.168	0.084	224.8	278.4	258.9	282.9	260.5	277.5
E021	chr19	1074342	1074407	TRUE	OK	214.3	0.00268	0.09371	0.6922	0.201	0.101	189.3	202.3	219.6	217.4	217.4	239.8
E022	chr19	1074613	1074724	TRUE	OK	202.1	0.00499	0.2145	0.7631	0.180	0.090	181.4	181.4	217.6	198.6	207.6	226.2
E023	chr19	1074798	1074879	TRUE	OK	173.3	0.00479	0.1538	0.7361	0.209	0.105	155.8	150.2	186.3	176.7	187.0	183.7
E024	chr19	1077486	1077856	TRUE	OK	49.1	0.0291	0.326	0.7998	0.326	0.163	38.5	35.5	59.4	37.7	63.7	59.9
E025	chr19	1077856	1078045	TRUE	OK	291.2	0.00169	0.1335	0.7254	0.150	0.075	274.1	280.5	291.1	309.8	298.7	293.0
E026	chr19	1079702	1079840	TRUE	OK	307.2	0.00727	0.6519	0.905	0.079	0.039	327.4	284.7	301.2	348.5	263.4	318.1
E027	chr19	1079927	1080118	TRUE	OK	344.1	0.0127	0.9426	0.9865	0.020	0.010	392.4	301.3	348.5	388.2	285.9	348.1
E028	chr19	1080254	1080379	TRUE	OK	259.7	0.0136	0.5526	0.8725	0.127	0.064	276.1	208.5	275.0	303.8	224.3	270.7
E029	chr19	1080379	1080463	FALSE	LOW_COUNTS_INDEP_FILTER	5.6	0.0372	0.07927	NA	NA	NA	5.9	1.0	4.0	5.0	8.8	8.7
E030	chr19	1080463	1080547	TRUE	OK	221.2	0.00522	0.543	0.8697	0.091	0.046	225.8	197.1	231.7	235.3	201.7	235.9
E031	chr19	1080681	1080786	TRUE	OK	249.1	0.0031	0.2162	0.7635	0.152	0.076	248.5	225.2	248.8	270.0	241.9	260.1
E032	chr19	1080891	1080961	TRUE	OK	207.4	0.00252	0.2421	0.7728	0.140	0.070	212.0	205.4	186.3	226.4	209.6	205.0
E033	chr19	1080961	1081064	TRUE	OK	251.8	0.00223	0.2327	0.7701	0.133	0.067	250.4	238.8	245.8	261.1	246.8	267.8
E034	chr19	1081414	1081549	FALSE	LOW_COUNTS_INDEP_FILTER	3.6	0.0725	0.5165	NA	NA	NA	7.9	2.1	3.0	4.0	2.9	1.9
E035	chr19	1081549	1081738	TRUE	OK	280.4	0.0057	0.2922	0.7894	0.157	0.079	289.9	248.2	274.0	317.7	259.5	293.0
E036	chr19	1081823	1081961	TRUE	OK	322.7	0.00444	0.7917	0.9475	0.040	0.020	337.2	319.1	315.3	347.5	278.1	339.4
E037	chr19	1082520	1082657	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.273	0.1066	NA	NA	NA	6.9	2.1	1.0	0.0	0.0	1.9
E038	chr19	1082783	1082839	FALSE	LOW_COUNTS_INDEP_FILTER	5.3	0.0945	0.09131	NA	NA	NA	11.8	9.4	2.0	2.0	3.9	2.9
E039	chr19	1082839	1082840	TRUE	OK	220.1	0.00798	0.7166	0.925	-0.061	-0.031	256.4	231.5	196.4	210.5	190.0	235.9
E040	chr19	1082840	1082938	TRUE	OK	288.2	0.00684	0.8634	0.9668	-0.030	-0.015	327.4	310.7	248.8	281.0	263.4	297.8
E041	chr19	1082938	1082956	TRUE	OK	200.3	0.00586	0.5162	0.8611	-0.097	-0.049	231.7	208.5	189.4	199.6	167.5	205.0
E042	chr19	1082956	1083066	TRUE	OK	267.6	0.00515	0.7326	0.9303	-0.050	-0.025	295.8	298.2	234.7	268.1	238.9	269.7
E043	chr19	1083066	1083142	TRUE	OK	11.0	0.0315	0.05366	0.634	-0.906	-0.453	17.7	15.6	10.1	4.0	6.9	11.6
E044	chr19	1083142	1083275	TRUE	OK	258.1	0.00402	0.6367	0.8999	0.060	0.030	274.1	274.2	223.6	253.2	260.5	263.0
E045	chr19	1083275	1083329	TRUE	OK	169.9	0.00274	0.5892	0.8845	-0.069	-0.034	168.6	198.1	163.2	156.9	154.7	177.9
E046	chr19	1083329	1083353	TRUE	OK	143.0	0.00866	0.8872	0.9729	0.022	0.011	139.0	175.2	118.9	133.0	128.3	163.4
E047	chr19	1084237	1084346	TRUE	OK	268.1	0.00477	0.9725	0.9934	0.001	0.001	239.6	322.2	255.8	266.1	236.0	289.1
E048	chr19	1085659	1085996	TRUE	OK	819.8	0.00698	0.3101	0.7943	-0.163	-0.081	772.0	1057.3	778.6	779.3	743.3	788.0
E049	chr19	1085996	1086600	TRUE	OK	1044.4	0.00978	0.1252	0.7202	-0.275	-0.137	1023.5	1373.3	1003.2	948.1	1009.6	908.8
E050	chr19	1086600	1086626	TRUE	OK	217.9	0.00378	0.7462	0.9343	-0.042	-0.021	219.9	247.1	206.5	205.5	233.1	195.3
E051	chr19	1086626	1086628	TRUE	OK	175.3	0.00394	0.9517	0.9888	0.009	0.005	189.3	180.4	163.2	165.8	186.1	167.3
J052	chr19	1066163	1068413	TRUE	OK	12.0	0.0098	0.6724	0.9111	-0.161	-0.080	8.9	13.6	16.1	12.9	10.8	9.7
J053	chr19	1066641	1068413	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.565	0.5622	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J054	chr19	1067495	1068332	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J055	chr19	1067495	1068413	TRUE	OK	111.2	0.00762	0.2074	0.7604	0.233	0.116	117.3	86.5	108.8	122.1	107.7	124.7
J056	chr19	1067495	1073148	FALSE	LOW_COUNTS_INDEP_FILTER	2.9	0.0391	0.04168	NA	NA	NA	3.9	6.3	3.0	1.0	2.9	0.0
J057	chr19	1067495	1080254	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J058	chr19	1067674	1068413	FALSE	LOW_COUNTS_INDEP_FILTER	5.0	0.245	0.9338	NA	NA	NA	4.9	0.0	12.1	3.0	5.9	3.9
J059	chr19	1068744	1073148	TRUE	OK	120.7	0.0326	0.5805	0.8814	0.149	0.074	108.5	80.3	161.2	149.9	103.8	120.9
J060	chr19	1071358	1073148	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J061	chr19	1071766	1073148	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J062	chr19	1073292	1073505	TRUE	OK	113.1	0.0294	0.2279	0.7682	0.337	0.169	102.5	66.7	137.0	134.0	111.6	126.7
J063	chr19	1073590	1073673	TRUE	OK	123.0	0.00623	0.0006208	0.1008	0.586	0.293	94.7	88.6	119.9	148.9	130.2	155.7
J064	chr19	1073746	1073947	TRUE	OK	136.5	0.0026	4.782e-05	0.01835	0.543	0.272	91.7	123.0	127.9	163.8	149.8	162.4
J065	chr19	1074014	1074103	TRUE	OK	132.4	0.00265	0.3277	0.8003	0.131	0.066	107.5	150.2	128.9	150.9	128.3	128.6
J066	chr19	1074241	1074342	TRUE	OK	163.9	0.00159	0.09678	0.6957	0.193	0.096	150.9	162.7	155.1	170.8	158.6	185.6
J067	chr19	1074407	1074613	TRUE	OK	162.3	0.00557	0.227	0.7677	0.191	0.095	144.0	148.1	172.2	151.9	167.5	190.5
J068	chr19	1074724	1074798	TRUE	OK	100.9	0.00538	0.471	0.8465	0.122	0.061	87.8	91.8	115.8	95.3	103.8	111.2
J069	chr19	1074879	1077856	TRUE	OK	113.2	0.00194	0.08601	0.6847	0.232	0.116	105.5	104.3	108.8	127.1	122.4	111.2
J070	chr19	1078045	1079702	TRUE	OK	167.4	0.00147	0.2586	0.7785	0.129	0.065	157.8	166.8	164.2	187.6	158.6	169.2
J071	chr19	1079840	1079927	TRUE	OK	192.7	0.0188	0.9838	0.996	0.007	0.004	228.8	166.8	190.4	222.4	143.0	205.0
J072	chr19	1080118	1080254	TRUE	OK	162.4	0.0145	0.8968	0.9753	0.035	0.018	176.5	133.5	179.3	190.6	131.2	163.4
J073	chr19	1080379	1080463	TRUE	OK	151.5	0.016	0.4641	0.8441	0.178	0.089	158.7	117.8	158.1	181.7	123.4	169.2
J074	chr19	1080547	1080681	TRUE	OK	153.1	0.00209	0.1273	0.7217	0.190	0.095	144.9	135.6	157.1	163.8	153.7	163.4
J075	chr19	1080786	1080891	TRUE	OK	155.2	0.0021	0.4069	0.826	0.104	0.052	163.7	149.1	144.0	167.8	151.8	154.7
J076	chr19	1081064	1081549	TRUE	OK	168.3	0.00537	0.3936	0.8218	0.133	0.066	177.5	144.9	168.2	171.8	161.6	185.6
J077	chr19	1081738	1081823	TRUE	OK	134.9	0.00764	0.2137	0.7628	0.230	0.115	124.2	115.7	140.0	168.8	117.5	143.1
J078	chr19	1081961	1082839	TRUE	OK	216.2	0.00629	0.7508	0.9355	-0.049	-0.024	246.5	229.4	193.4	210.5	187.0	230.1
J079	chr19	1082657	1082839	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.081	0.0659	NA	NA	NA	3.0	2.1	1.0	0.0	0.0	1.0
J080	chr19	1083066	1083142	TRUE	OK	170.9	0.00602	0.3125	0.795	0.156	0.078	183.4	177.3	134.0	175.7	180.2	175.0
J081	chr19	1083066	1083275	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.115	0.6875	NA	NA	NA	0.0	1.0	2.0	0.0	1.0	1.0
J082	chr19	1083353	1084237	TRUE	OK	115.8	0.00734	0.8664	0.9675	0.032	0.016	109.4	136.6	103.7	100.3	107.7	137.3
J083	chr19	1084346	1085659	TRUE	OK	200.5	0.00561	0.5097	0.8591	0.096	0.048	168.6	238.8	185.3	221.4	174.3	214.6

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000180448.10
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE