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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr20 | 41178447 | 41182113 | TRUE | OK | 926.3 | 0.0216 | 0.606 | 0.8899 | -0.102 | -0.051 | 933.8 | 942.6 | 807.8 | 999.7 | 928.4 | 945.6 |
| E002 | chr20 | 41182113 | 41182114 | TRUE | OK | 43.5 | 0.0127 | 0.8293 | 0.9575 | -0.070 | -0.035 | 59.2 | 29.2 | 37.3 | 58.6 | 39.2 | 37.7 |
| E003 | chr20 | 41182114 | 41184367 | TRUE | OK | 663.1 | 0.00371 | 0.3663 | 0.8124 | 0.097 | 0.048 | 692.2 | 451.5 | 675.8 | 826.0 | 647.3 | 685.5 |
| E004 | chr20 | 41184367 | 41184819 | TRUE | OK | 166.0 | 0.00365 | 0.2564 | 0.7777 | 0.163 | 0.081 | 163.7 | 125.1 | 153.1 | 224.4 | 163.5 | 166.3 |
| E005 | chr20 | 41184819 | 41184820 | TRUE | OK | 54.7 | 0.0125 | 0.8129 | 0.9534 | -0.038 | -0.019 | 62.1 | 45.9 | 48.3 | 79.4 | 44.1 | 48.3 |
| E006 | chr20 | 41184820 | 41184826 | TRUE | OK | 57.0 | 0.0104 | 0.8554 | 0.9646 | 0.057 | 0.029 | 62.1 | 45.9 | 49.4 | 83.4 | 50.9 | 50.3 |
| E007 | chr20 | 41184826 | 41184915 | TRUE | OK | 98.0 | 0.00532 | 0.5571 | 0.8739 | -0.109 | -0.055 | 125.2 | 78.2 | 83.6 | 114.2 | 92.1 | 94.7 |
| E008 | chr20 | 41184915 | 41185195 | TRUE | OK | 206.1 | 0.00373 | 0.6539 | 0.9057 | -0.066 | -0.033 | 245.5 | 162.7 | 186.3 | 230.3 | 216.4 | 195.3 |
| E009 | chr20 | 41185195 | 41185201 | TRUE | OK | 85.8 | 0.00426 | 0.9227 | 0.9819 | 0.020 | 0.010 | 79.9 | 77.2 | 83.6 | 93.3 | 93.0 | 88.0 |
| E010 | chr20 | 41201285 | 41201384 | TRUE | OK | 36.1 | 0.0257 | 0.2593 | 0.7789 | -0.369 | -0.185 | 34.5 | 49.0 | 32.2 | 32.8 | 33.3 | 34.8 |
| E011 | chr20 | 41202056 | 41202282 | TRUE | OK | 162.1 | 0.0031 | 0.9643 | 0.9917 | -0.005 | -0.002 | 170.6 | 137.6 | 150.1 | 181.7 | 176.3 | 156.6 |
| E012 | chr20 | 41202282 | 41202396 | TRUE | OK | 98.5 | 0.0027 | 0.1078 | 0.7053 | -0.241 | -0.121 | 109.4 | 82.4 | 109.8 | 105.2 | 94.0 | 89.9 |
| E013 | chr20 | 41202396 | 41204041 | TRUE | OK | 753.8 | 0.0179 | 0.6355 | 0.8996 | 0.047 | 0.024 | 874.6 | 420.2 | 805.8 | 831.0 | 768.7 | 822.8 |
| E014 | chr20 | 41204041 | 41204244 | TRUE | OK | 195.0 | 0.0128 | 0.4726 | 0.847 | 0.104 | 0.052 | 225.8 | 103.2 | 201.4 | 221.4 | 190.0 | 228.2 |
| E015 | chr20 | 41204244 | 41204561 | TRUE | OK | 201.6 | 0.00841 | 0.8385 | 0.9602 | 0.013 | 0.007 | 229.7 | 122.0 | 214.5 | 233.3 | 179.2 | 231.1 |
| E016 | chr20 | 41204561 | 41204627 | TRUE | OK | 104.1 | 0.00911 | 0.3529 | 0.8083 | 0.172 | 0.086 | 117.3 | 60.5 | 97.7 | 135.0 | 89.1 | 124.7 |
| E017 | chr20 | 41204627 | 41204647 | TRUE | OK | 84.8 | 0.0178 | 0.3203 | 0.798 | 0.226 | 0.113 | 99.6 | 41.7 | 78.6 | 108.2 | 71.5 | 109.3 |
| E018 | chr20 | 41204647 | 41204773 | TRUE | OK | 141.2 | 0.0237 | 0.3046 | 0.7929 | 0.217 | 0.108 | 168.6 | 62.6 | 137.0 | 170.8 | 130.2 | 177.9 |
| E019 | chr20 | 41204773 | 41204777 | TRUE | OK | 96.4 | 0.0353 | 0.2608 | 0.7793 | 0.285 | 0.142 | 115.4 | 35.5 | 93.7 | 107.2 | 95.0 | 131.5 |
| E020 | chr20 | 41204777 | 41205066 | TRUE | OK | 199.8 | 0.0194 | 0.6317 | 0.8982 | 0.069 | 0.035 | 239.6 | 103.2 | 207.5 | 226.4 | 175.3 | 246.5 |
| E021 | chr20 | 41213733 | 41213757 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.8 | 0.0318 | 0.4253 | NA | NA | NA | 7.9 | 2.1 | 6.0 | 12.9 | 5.9 | 5.8 |
| E022 | chr20 | 41213757 | 41213899 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.1 | 0.0632 | 0.2047 | NA | NA | NA | 6.9 | 2.1 | 5.0 | 16.9 | 4.9 | 6.8 |
| E023 | chr20 | 41238687 | 41238726 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.2 | 0.0226 | 0.04497 | NA | NA | NA | 9.9 | 6.3 | 8.1 | 6.0 | 3.9 | 2.9 |
| E024 | chr20 | 41238726 | 41238796 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.7 | 0.0268 | 0.05969 | NA | NA | NA | 9.9 | 6.3 | 6.0 | 5.0 | 4.9 | 1.9 |
| E025 | chr20 | 41239597 | 41239704 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.164 | 0.4171 | NA | NA | NA | 1.0 | 0.0 | 3.0 | 0.0 | 1.0 | 1.0 |
| E026 | chr20 | 41254587 | 41254635 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.182 | 0.287 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 1.9 |
| E027 | chr20 | 41267462 | 41267612 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.0 | 0.0466 | 0.5042 | NA | NA | NA | 3.9 | 8.3 | 7.1 | 7.9 | 13.7 | 6.8 |
| E028 | chr20 | 41268978 | 41268980 | TRUE | OK | 28.9 | 0.0105 | 0.6189 | 0.8942 | -0.165 | -0.083 | 38.5 | 14.6 | 33.2 | 27.8 | 27.4 | 31.9 |
| E029 | chr20 | 41268980 | 41268989 | TRUE | OK | 29.2 | 0.0114 | 0.63 | 0.8977 | -0.166 | -0.083 | 39.4 | 14.6 | 33.2 | 27.8 | 28.4 | 31.9 |
| E030 | chr20 | 41268989 | 41269083 | TRUE | OK | 101.1 | 0.00404 | 0.0001594 | 0.04272 | -0.600 | -0.300 | 135.1 | 100.1 | 110.8 | 107.2 | 73.4 | 80.2 |
| E031 | chr20 | 41269410 | 41269485 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.391 | 0.3092 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| E032 | chr20 | 41271926 | 41272138 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E033 | chr20 | 41272138 | 41272203 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E034 | chr20 | 41272203 | 41272245 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.714 | 0.4442 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E035 | chr20 | 41272245 | 41272253 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.714 | 0.4442 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E036 | chr20 | 41272253 | 41272258 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.714 | 0.4442 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E037 | chr20 | 41272258 | 41272264 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.714 | 0.4442 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E038 | chr20 | 41272264 | 41272273 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.714 | 0.4442 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E039 | chr20 | 41299965 | 41300074 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.85 | 0.6642 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E040 | chr20 | 41300074 | 41300078 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E041 | chr20 | 41300078 | 41300087 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E042 | chr20 | 41300087 | 41300090 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E043 | chr20 | 41300090 | 41300094 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E044 | chr20 | 41300094 | 41300117 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E045 | chr20 | 41300117 | 41300126 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E046 | chr20 | 41300126 | 41300127 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E047 | chr20 | 41316861 | 41317186 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.8 | 0.0295 | 0.8748 | NA | NA | NA | 6.9 | 2.1 | 5.0 | 5.0 | 3.9 | 5.8 |
| E048 | chr20 | 41317508 | 41317597 | TRUE | OK | 47.7 | 0.0425 | 2.556e-05 | 0.01137 | -1.593 | -0.796 | 76.9 | 73.0 | 57.4 | 41.7 | 23.5 | 13.5 |
| E049 | chr20 | 41317597 | 41317602 | TRUE | OK | 34.4 | 0.616 | 0.04312 | 0.604 | -2.095 | -1.048 | 61.1 | 59.4 | 42.3 | 33.8 | 9.8 | 0.0 |
| E050 | chr20 | 41317602 | 41317672 | TRUE | OK | 34.7 | 0.176 | 0.002287 | 0.2054 | -1.955 | -0.977 | 59.2 | 59.4 | 42.3 | 33.8 | 11.8 | 1.9 |
| J051 | chr20 | 41185195 | 41202282 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.555 | 0.6308 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| J052 | chr20 | 41185201 | 41201285 | TRUE | OK | 16.3 | 0.0127 | 0.1377 | 0.7283 | -0.514 | -0.257 | 20.7 | 20.9 | 13.1 | 12.9 | 13.7 | 16.4 |
| J053 | chr20 | 41185201 | 41202056 | TRUE | OK | 52.9 | 0.00275 | 0.1537 | 0.7361 | 0.263 | 0.131 | 48.3 | 38.6 | 48.3 | 62.5 | 59.7 | 59.9 |
| J054 | chr20 | 41185201 | 41202282 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.153 | 0.2556 | NA | NA | NA | 3.0 | 1.0 | 8.1 | 1.0 | 3.9 | 1.0 |
| J055 | chr20 | 41185201 | 41204244 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.55 | 0.5005 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J056 | chr20 | 41201384 | 41202056 | TRUE | OK | 21.2 | 0.0112 | 0.02327 | 0.5145 | -0.703 | -0.351 | 22.7 | 28.2 | 24.2 | 17.9 | 19.6 | 14.5 |
| J057 | chr20 | 41205066 | 41213733 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.9 | 0.0304 | 0.1783 | NA | NA | NA | 5.9 | 2.1 | 4.0 | 12.9 | 4.9 | 5.8 |
| J058 | chr20 | 41205066 | 41238687 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.6 | 0.0216 | 0.08384 | NA | NA | NA | 7.9 | 3.1 | 7.1 | 5.0 | 2.0 | 2.9 |
| J059 | chr20 | 41205066 | 41254587 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J060 | chr20 | 41205066 | 41268978 | TRUE | OK | 23.9 | 0.0454 | 0.8224 | 0.9558 | 0.010 | 0.005 | 31.6 | 7.3 | 28.2 | 21.8 | 22.5 | 31.9 |
| J061 | chr20 | 41205066 | 41268989 | TRUE | OK | 39.4 | 0.00993 | 0.4124 | 0.8278 | -0.216 | -0.108 | 51.3 | 26.1 | 42.3 | 41.7 | 27.4 | 47.4 |
| J062 | chr20 | 41205066 | 41316861 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J063 | chr20 | 41213899 | 41238687 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.263 | 0.9027 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| J064 | chr20 | 41213899 | 41267462 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J065 | chr20 | 41213899 | 41268989 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.117 | 0.2909 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 4.0 | 0.0 | 1.9 |
| J066 | chr20 | 41238796 | 41239597 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.167 | 0.5229 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 |
| J067 | chr20 | 41238796 | 41254587 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.657 | 0.4253 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.9 |
| J068 | chr20 | 41239704 | 41267462 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.596 | 0.3109 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| J069 | chr20 | 41239704 | 41268989 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.6295 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J070 | chr20 | 41254635 | 41268978 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J071 | chr20 | 41254635 | 41268989 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.55 | 0.5005 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J072 | chr20 | 41267612 | 41268978 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.997 | 0.7634 | NA | NA | NA | 0.0 | 4.2 | 0.0 | 0.0 | 2.0 | 0.0 |
| J073 | chr20 | 41267612 | 41268989 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.7 | 0.216 | 0.7581 | NA | NA | NA | 1.0 | 2.1 | 3.0 | 3.0 | 6.9 | 0.0 |
| J074 | chr20 | 41269083 | 41269410 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J075 | chr20 | 41269083 | 41271926 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J076 | chr20 | 41269083 | 41272138 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J077 | chr20 | 41269083 | 41272203 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J078 | chr20 | 41269083 | 41299965 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J079 | chr20 | 41269083 | 41317508 | TRUE | OK | 39.9 | 0.0325 | 8.866e-06 | 0.004989 | -1.561 | -0.781 | 65.1 | 56.3 | 51.4 | 36.7 | 16.6 | 13.5 |
| J080 | chr20 | 41269485 | 41272138 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J081 | chr20 | 41269485 | 41272203 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000174306.21 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |