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Normalized Counts Table (ENSG00000009830.11)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr14	77274955	77274957	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.655	0.821	NA	NA	NA	0.0	3.1	1.0	0.0	0.0	4.8
E002	chr14	77274957	77276982	TRUE	OK	870.4	0.00664	0.1705	0.7443	-0.197	-0.098	840.1	947.8	851.1	830.0	884.3	869.2
E003	chr14	77276982	77276990	TRUE	OK	106.4	0.00706	0.5872	0.8838	-0.109	-0.055	128.2	80.3	109.8	98.3	109.7	112.2
E004	chr14	77276990	77277278	TRUE	OK	316.6	0.00175	0.417	0.8293	-0.078	-0.039	308.6	313.9	314.3	289.9	326.1	347.1
E005	chr14	77277278	77277414	TRUE	OK	285.4	0.00662	0.2491	0.7752	-0.181	-0.091	246.5	309.7	316.3	269.0	269.3	301.7
E006	chr14	77277414	77277481	TRUE	OK	281.6	0.00969	0.2879	0.7878	-0.188	-0.094	243.5	317.0	302.2	243.2	260.5	322.9
E007	chr14	77278285	77278393	FALSE	LOW_COUNTS_INDEP_FILTER	3.1	0.0408	0.4136	NA	NA	NA	3.0	2.1	2.0	3.0	4.9	3.9
E008	chr14	77278393	77278508	TRUE	OK	308.6	0.00342	0.2975	0.791	-0.124	-0.062	284.0	325.3	317.3	289.9	301.6	333.6
E009	chr14	77278728	77278772	TRUE	OK	274.2	0.00235	0.728	0.9288	-0.035	-0.018	261.3	275.3	263.9	253.2	283.0	308.4
E010	chr14	77278772	77278812	TRUE	OK	261.1	0.00156	0.5747	0.8797	0.057	0.028	242.6	237.7	258.9	258.1	274.2	294.9
E011	chr14	77278812	77278869	TRUE	OK	240.2	0.00285	0.1695	0.7442	0.169	0.084	212.0	210.6	231.7	216.4	286.9	283.3
E012	chr14	77278869	77278961	TRUE	OK	28.1	0.00713	0.0005918	0.0982	-0.916	-0.458	40.4	32.3	34.2	14.9	22.5	24.2
E013	chr14	77278961	77279061	TRUE	OK	35.1	0.0189	0.1032	0.7012	-0.482	-0.241	30.6	45.9	42.3	20.8	29.4	41.6
E014	chr14	77279061	77279536	TRUE	OK	71.4	0.0135	0.7878	0.9464	0.077	0.038	70.0	76.1	54.4	56.6	78.3	92.8
E015	chr14	77279536	77279586	TRUE	OK	52.2	0.0176	0.00159	0.1701	0.912	0.456	41.4	30.2	32.2	44.7	79.3	85.1
E016	chr14	77279586	77279683	TRUE	OK	52.2	0.0312	0.1183	0.7147	0.567	0.284	52.3	35.5	33.2	36.7	75.4	80.2
E017	chr14	77279683	77279822	TRUE	OK	49.7	0.0239	0.3105	0.7945	0.361	0.180	44.4	38.6	42.3	31.8	73.4	67.7
E018	chr14	77279822	77279909	TRUE	OK	235.7	0.00183	0.1094	0.7074	0.171	0.086	208.0	210.6	222.6	246.2	272.2	254.3
E019	chr14	77279909	77279928	TRUE	OK	178.5	0.00262	0.0513	0.6284	0.242	0.121	160.7	141.8	170.2	189.6	219.4	189.5
E020	chr14	77280020	77280074	TRUE	OK	204.0	0.00251	0.05352	0.6339	0.228	0.114	189.3	157.5	196.4	217.4	243.8	219.5
E021	chr14	77280074	77280080	TRUE	OK	163.1	0.00634	0.1494	0.7344	0.228	0.114	151.8	117.8	164.2	187.6	192.9	164.4
E022	chr14	77280305	77280391	TRUE	OK	10.7	0.0195	0.03581	0.5777	0.914	0.457	5.9	3.1	12.1	12.9	16.6	13.5
E023	chr14	77280391	77280463	TRUE	OK	235.5	0.00434	0.1192	0.7153	0.204	0.102	213.0	178.3	241.7	267.1	256.6	256.2
E024	chr14	77283796	77283852	TRUE	OK	251.0	0.00476	0.2289	0.7687	0.157	0.079	236.6	185.6	263.9	273.0	273.2	273.6
E025	chr14	77283852	77283873	TRUE	OK	228.2	0.00489	0.3587	0.8104	0.120	0.060	224.8	167.9	238.7	244.2	247.8	245.6
E026	chr14	77283873	77284363	TRUE	OK	101.2	0.0238	0.2262	0.7675	0.400	0.200	78.9	84.5	88.6	70.5	127.3	157.6
E027	chr14	77284949	77284968	TRUE	OK	224.4	0.0048	0.4403	0.8363	0.099	0.050	216.9	166.8	241.7	234.3	248.7	237.8
E028	chr14	77284968	77285041	TRUE	OK	324.2	0.00397	0.7584	0.938	0.031	0.015	320.5	256.5	348.5	330.6	356.5	332.6
E029	chr14	77285280	77285479	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.09	0.2331	NA	NA	NA	2.0	0.0	1.0	4.0	1.0	2.9
E030	chr14	77285479	77285480	FALSE	LOW_COUNTS_INDEP_FILTER	4.0	0.139	0.1592	NA	NA	NA	3.9	7.3	5.0	6.0	2.0	0.0
E031	chr14	77285480	77285566	TRUE	OK	293.4	0.0025	0.4043	0.8254	0.087	0.044	283.0	235.7	303.2	305.8	322.2	310.4
E032	chr14	77285566	77285603	TRUE	OK	246.1	0.00262	0.514	0.8604	0.073	0.037	247.5	202.3	242.7	252.2	248.7	283.3
E033	chr14	77285603	77285632	TRUE	OK	199.4	0.00949	0.7465	0.9344	-0.052	-0.026	208.0	166.8	210.5	184.7	173.3	253.3
E034	chr14	77286743	77286747	TRUE	OK	154.9	0.00693	0.4998	0.8556	0.118	0.059	155.8	119.9	153.1	144.0	153.7	203.0
E035	chr14	77286747	77286822	TRUE	OK	207.7	0.0109	0.6896	0.9166	0.078	0.039	229.7	154.3	199.4	180.7	215.4	266.8
E036	chr14	77286822	77287209	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0782	0.6784	NA	NA	NA	3.0	1.0	2.0	3.0	1.0	1.0
E037	chr14	77287232	77287271	FALSE	LOW_COUNTS_INDEP_FILTER	5.6	0.0248	0.1164	NA	NA	NA	2.0	4.2	5.0	6.9	7.8	7.7
E038	chr14	77287579	77287824	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.114	0.2493	NA	NA	NA	2.0	0.0	0.0	1.0	2.0	2.9
E039	chr14	77288761	77288831	TRUE	OK	214.1	0.0158	0.6731	0.9113	0.097	0.049	241.6	152.2	203.5	172.7	237.0	277.5
E040	chr14	77291313	77291367	TRUE	OK	217.0	0.0166	0.6069	0.8902	0.118	0.059	248.5	153.3	199.4	176.7	243.8	280.4
E041	chr14	77291367	77291380	TRUE	OK	161.2	0.0151	0.689	0.9165	0.081	0.040	194.2	118.9	139.0	140.0	171.4	204.0
E042	chr14	77291380	77291493	FALSE	LOW_COUNTS_INDEP_FILTER	7.5	0.0461	0.3971	NA	NA	NA	9.9	5.2	10.1	10.9	3.9	4.8
E043	chr14	77296163	77296273	TRUE	OK	233.5	0.0118	0.915	0.9801	-0.038	-0.019	282.0	173.1	226.6	216.4	232.1	270.7
E044	chr14	77296411	77296507	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.0696	0.03106	NA	NA	NA	0.0	1.0	1.0	4.0	2.0	4.8
E045	chr14	77298688	77298771	TRUE	OK	202.7	0.00654	0.7733	0.9423	0.034	0.017	228.8	153.3	195.4	206.5	214.5	217.5
E046	chr14	77299454	77299477	TRUE	OK	133.1	0.00867	0.7478	0.9347	-0.071	-0.036	158.7	108.4	125.9	143.0	126.3	136.3
E047	chr14	77299477	77299523	TRUE	OK	146.7	0.0165	0.9096	0.9785	-0.044	-0.022	182.4	116.8	129.9	168.8	131.2	150.8
E048	chr14	77299523	77299561	TRUE	OK	153.6	0.00786	0.9243	0.9822	0.007	0.004	179.5	130.3	131.9	160.8	153.7	165.3
E049	chr14	77299561	77301088	TRUE	OK	23.1	0.0251	0.2971	0.7908	0.349	0.175	24.7	9.4	24.2	30.8	25.5	24.2
E050	chr14	77301088	77301089	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.124	0.7043	NA	NA	NA	3.9	1.0	4.0	3.0	4.9	0.0
E051	chr14	77301089	77301163	TRUE	OK	146.4	0.0114	0.7143	0.9243	-0.086	-0.043	173.5	117.8	143.0	164.8	132.2	147.0
E052	chr14	77301163	77301221	TRUE	OK	134.2	0.0085	0.4593	0.8427	-0.146	-0.073	154.8	109.5	142.0	145.9	120.5	132.5
E053	chr14	77301221	77301249	TRUE	OK	123.1	0.00315	0.4248	0.8313	-0.118	-0.059	137.1	104.3	127.9	122.1	122.4	124.7
E054	chr14	77302833	77302834	FALSE	LOW_COUNTS_INDEP_FILTER	2.9	0.135	0.4102	NA	NA	NA	3.9	1.0	1.0	2.0	2.0	7.7
E055	chr14	77302834	77302943	TRUE	OK	205.9	0.0122	0.4622	0.8434	0.125	0.062	222.8	133.5	212.5	215.4	214.5	236.9
E056	chr14	77304691	77304693	TRUE	OK	180.9	0.0131	0.5583	0.8742	0.099	0.049	214.9	122.0	167.2	178.7	198.8	204.0
E057	chr14	77304693	77304746	TRUE	OK	216.8	0.0108	0.4202	0.8302	0.134	0.067	241.6	144.9	210.5	216.4	247.8	239.8
E058	chr14	77304746	77304772	TRUE	OK	211.3	0.00727	0.5216	0.8628	0.092	0.046	228.8	149.1	212.5	211.5	235.0	231.1
E059	chr14	77304772	77304800	TRUE	OK	207.8	0.00719	0.4385	0.8357	0.114	0.057	223.8	146.0	206.5	213.4	227.2	230.1
E060	chr14	77306245	77306336	TRUE	OK	26.6	0.0576	0.06445	0.6543	0.774	0.387	18.7	6.3	31.2	27.8	36.2	39.6
E061	chr14	77306336	77306401	TRUE	OK	243.5	0.00812	0.22	0.7648	0.193	0.096	228.8	164.7	263.9	242.2	285.0	276.5
E062	chr14	77306401	77306441	TRUE	OK	208.7	0.00478	0.4207	0.8302	0.106	0.053	192.3	156.4	231.7	211.5	225.2	234.9
E063	chr14	77306441	77306490	FALSE	LOW_COUNTS_INDEP_FILTER	3.8	0.0433	0.7027	NA	NA	NA	4.9	1.0	6.0	3.0	2.9	4.8
E064	chr14	77306490	77306503	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E065	chr14	77306631	77306897	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.249	0.6727	NA	NA	NA	0.0	1.0	0.0	0.0	1.0	1.0
E066	chr14	77311948	77312033	TRUE	OK	208.8	0.0043	0.461	0.8432	0.096	0.048	194.2	166.8	221.6	229.3	208.6	232.0
E067	chr14	77312297	77312379	FALSE	LOW_COUNTS_INDEP_FILTER	1.1	0.222	0.4142	NA	NA	NA	0.0	0.0	2.0	0.0	2.0	2.9
E068	chr14	77312379	77312635	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.222	0.4277	NA	NA	NA	0.0	0.0	1.0	1.0	0.0	1.9
E069	chr14	77319499	77319595	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.865	0.6453	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
E070	chr14	77320307	77320340	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.85	0.6391	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
E071	chr14	77320433	77320704	TRUE	OK	264.5	0.00764	0.9351	0.9846	0.003	0.002	272.1	207.5	282.0	295.9	256.6	272.6
E072	chr14	77320704	77320860	TRUE	OK	106.6	0.0152	0.6148	0.8928	-0.139	-0.070	124.2	76.1	121.9	120.1	99.9	97.7
E073	chr14	77320860	77320884	TRUE	OK	13.7	0.134	0.7586	0.938	-0.322	-0.161	17.7	3.1	23.2	9.9	20.6	7.7
J074	chr14	77277278	77278393	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J075	chr14	77277481	77278393	TRUE	OK	216.9	0.00738	0.2639	0.7803	-0.179	-0.090	193.3	240.9	229.6	183.7	203.7	250.4
J076	chr14	77278508	77278728	TRUE	OK	225.1	0.00196	0.2946	0.7899	-0.113	-0.057	214.9	236.7	222.6	204.5	227.2	244.6
J077	chr14	77278508	77279822	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.55	0.5177	NA	NA	NA	0.0	0.0	1.0	0.0	0.0	0.0
J078	chr14	77278869	77279536	TRUE	OK	24.3	0.0142	8.573e-06	0.004845	1.490	0.745	11.8	11.5	13.1	22.8	45.0	41.6
J079	chr14	77278869	77279822	TRUE	OK	120.7	0.00201	0.7556	0.937	0.042	0.021	108.5	119.9	114.8	117.1	124.4	139.2
J080	chr14	77278961	77279822	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.556	0.6039	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J081	chr14	77279586	77279683	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.0445	0.4279	NA	NA	NA	0.0	3.1	2.0	2.0	2.9	3.9
J082	chr14	77279928	77280020	TRUE	OK	156.1	0.00217	0.06503	0.6549	0.227	0.113	135.1	126.2	154.1	173.7	184.1	163.4
J083	chr14	77280080	77280391	TRUE	OK	147.0	0.00377	0.1651	0.7419	0.193	0.096	137.1	110.5	148.1	167.8	167.5	150.8
J084	chr14	77280463	77283796	TRUE	OK	165.7	0.00243	0.2588	0.7785	0.137	0.069	154.8	131.4	169.2	183.7	170.4	184.7
J085	chr14	77283873	77284949	TRUE	OK	176.3	0.0084	0.8515	0.9637	0.018	0.009	180.4	128.3	196.4	193.6	183.1	176.0
J086	chr14	77285041	77285480	TRUE	OK	253.3	0.00159	0.3933	0.8216	0.085	0.042	242.6	207.5	259.9	255.1	289.9	264.9
J087	chr14	77285632	77286743	TRUE	OK	150.8	0.00912	0.6081	0.8906	0.102	0.051	153.8	116.8	149.1	142.0	141.0	202.1
J088	chr14	77286822	77287232	FALSE	LOW_COUNTS_INDEP_FILTER	4.1	0.0427	0.5372	NA	NA	NA	1.0	4.2	5.0	3.0	7.8	3.9
J089	chr14	77286822	77287579	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.556	0.6039	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J090	chr14	77286822	77288761	TRUE	OK	155.8	0.0129	0.7675	0.9405	0.066	0.033	177.5	115.7	146.0	127.1	168.4	200.1
J091	chr14	77287271	77288761	FALSE	LOW_COUNTS_INDEP_FILTER	4.5	0.0255	0.5445	NA	NA	NA	2.0	4.2	5.0	3.0	7.8	4.8
J092	chr14	77288831	77291313	TRUE	OK	159.4	0.0235	0.6096	0.8911	0.135	0.067	187.3	103.2	148.1	126.1	177.2	214.6
J093	chr14	77291380	77296163	TRUE	OK	146.7	0.0131	0.7716	0.9417	0.056	0.028	174.5	109.5	130.9	128.1	151.8	185.6
J094	chr14	77296273	77296411	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.103	0.372	NA	NA	NA	0.0	1.0	1.0	2.0	0.0	2.9
J095	chr14	77296273	77298688	TRUE	OK	145.7	0.00762	0.9043	0.9771	0.007	0.003	168.6	105.3	145.0	145.9	155.7	153.7
J096	chr14	77298771	77299454	TRUE	OK	126.5	0.00505	0.7418	0.9332	-0.060	-0.030	145.9	103.2	122.9	132.0	122.4	132.5
J097	chr14	77299561	77301089	TRUE	OK	114.6	0.0153	0.9291	0.9833	-0.029	-0.015	137.1	94.9	101.7	137.0	100.9	116.0
J098	chr14	77299561	77304691	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.119	0.4423	NA	NA	NA	4.9	4.2	1.0	1.0	4.9	1.0
J099	chr14	77301249	77302834	TRUE	OK	101.0	0.00436	0.8708	0.9687	-0.034	-0.017	110.4	75.1	108.8	103.3	99.9	108.3
J100	chr14	77302943	77304691	TRUE	OK	158.3	0.0122	0.4595	0.8427	0.131	0.066	177.5	101.1	157.1	156.9	171.4	185.6
J101	chr14	77304800	77306245	TRUE	OK	11.0	0.0833	0.5365	0.8676	0.238	0.119	8.9	2.1	18.1	11.9	11.8	13.5
J102	chr14	77304800	77306336	TRUE	OK	168.5	0.00474	0.3178	0.7967	0.139	0.070	180.4	122.0	160.1	174.7	190.0	183.7
J103	chr14	77304800	77306401	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.125	0.9198	NA	NA	NA	1.0	0.0	1.0	0.0	1.0	1.0
J104	chr14	77306441	77306631	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J105	chr14	77306441	77311948	TRUE	OK	148.4	0.00414	0.4972	0.8548	0.093	0.046	126.2	122.0	166.2	158.8	150.8	166.3
J106	chr14	77306441	77320433	TRUE	OK	11.4	0.0431	0.6978	0.9192	0.222	0.111	10.8	6.3	13.1	5.0	17.6	15.5
J107	chr14	77312033	77312297	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.171	0.6559	NA	NA	NA	0.0	0.0	1.0	0.0	1.0	1.0
J108	chr14	77312033	77319499	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J109	chr14	77312033	77320433	TRUE	OK	128.9	0.0026	0.9377	0.9853	0.007	0.004	124.2	108.4	138.0	140.0	125.3	137.3
J110	chr14	77319595	77320307	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N111	chr14	77296273	77304691	TRUE	OK	14.1	0.0213	0.918	0.9807	-0.054	-0.027	20.7	12.5	8.1	12.9	15.7	14.5

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000009830.11
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE