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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr19 | 54200808 | 54200857 | TRUE | OK | 27.6 | 0.0218 | 0.3452 | 0.8056 | -0.274 | -0.137 | 33.5 | 31.3 | 29.2 | 31.8 | 14.7 | 25.1 |
E002 | chr19 | 54200857 | 54200870 | TRUE | OK | 236.2 | 0.0113 | 0.4434 | 0.8374 | 0.184 | 0.092 | 221.9 | 263.8 | 207.5 | 270.0 | 179.2 | 274.6 |
E003 | chr19 | 54200870 | 54200871 | TRUE | OK | 250.0 | 0.0107 | 0.2656 | 0.781 | 0.244 | 0.122 | 232.7 | 269.0 | 216.6 | 286.9 | 198.8 | 295.9 |
E004 | chr19 | 54200871 | 54200873 | TRUE | OK | 1144.7 | 0.00569 | 0.07703 | 0.6738 | 0.255 | 0.127 | 985.0 | 1287.8 | 1008.2 | 1262.8 | 999.8 | 1324.6 |
E005 | chr19 | 54200873 | 54200878 | TRUE | OK | 4288.7 | 0.00434 | 0.01248 | 0.4203 | 0.300 | 0.150 | 3791.2 | 4690.2 | 3680.4 | 4678.0 | 4064.0 | 4828.4 |
E006 | chr19 | 54200878 | 54200888 | TRUE | OK | 9912.4 | 0.00271 | 0.0155 | 0.4524 | 0.230 | 0.115 | 8729.1 | 11465.7 | 8804.1 | 10545.4 | 9469.6 | 10460.2 |
E007 | chr19 | 54200888 | 54200893 | TRUE | OK | 635.8 | 0.00149 | 0.0009327 | 0.1269 | 0.272 | 0.136 | 533.4 | 751.8 | 525.8 | 689.0 | 605.2 | 709.7 |
E008 | chr19 | 54200893 | 54200961 | TRUE | OK | 265.8 | 0.00638 | 0.8505 | 0.9633 | 0.046 | 0.023 | 233.7 | 310.7 | 274.0 | 235.3 | 261.5 | 279.4 |
E009 | chr19 | 54201132 | 54201159 | TRUE | OK | 299.8 | 0.0129 | 0.4653 | 0.8445 | -0.116 | -0.058 | 285.9 | 378.5 | 308.2 | 304.8 | 312.4 | 208.8 |
E010 | chr19 | 54201159 | 54201281 | TRUE | OK | 26666.8 | 0.00301 | 0.1227 | 0.7182 | 0.162 | 0.081 | 24154.3 | 32669.4 | 24018.2 | 27830.9 | 24950.1 | 26378.2 |
E011 | chr19 | 54201486 | 54201609 | TRUE | OK | 40267.1 | 0.00159 | 0.2433 | 0.7733 | 0.088 | 0.044 | 36454.7 | 52309.1 | 35867.2 | 40756.0 | 37040.3 | 39175.3 |
E012 | chr19 | 54201609 | 54202008 | TRUE | OK | 314.4 | 0.0201 | 0.04929 | 0.6236 | -0.457 | -0.228 | 352.0 | 356.6 | 420.0 | 262.1 | 277.1 | 218.5 |
E013 | chr19 | 54206275 | 54206462 | TRUE | OK | 37414.1 | 0.00324 | 0.02503 | 0.5255 | -0.221 | -0.110 | 35238.0 | 51778.3 | 33124.5 | 36266.6 | 32672.7 | 35404.6 |
E014 | chr19 | 54206462 | 54206552 | TRUE | OK | 423.0 | 0.00843 | 0.008919 | 0.3764 | -0.410 | -0.205 | 442.7 | 610.0 | 446.2 | 345.5 | 405.4 | 288.1 |
E015 | chr19 | 54206552 | 54206565 | TRUE | OK | 388.0 | 0.0171 | 0.03801 | 0.5862 | 0.492 | 0.246 | 386.5 | 328.5 | 301.2 | 405.1 | 458.3 | 448.6 |
E016 | chr19 | 54206565 | 54206724 | TRUE | OK | 631.8 | 0.0065 | 0.01694 | 0.4675 | 0.359 | 0.179 | 586.7 | 650.7 | 504.6 | 648.3 | 715.9 | 684.5 |
E017 | chr19 | 54206724 | 54206847 | TRUE | OK | 189.7 | 0.00967 | 0.002905 | 0.2309 | -0.529 | -0.264 | 207.1 | 251.3 | 236.7 | 130.1 | 144.9 | 168.2 |
E018 | chr19 | 54206847 | 54207397 | TRUE | OK | 948.1 | 0.00909 | 0.008752 | 0.3734 | -0.411 | -0.206 | 991.9 | 1382.6 | 982.0 | 770.4 | 913.7 | 647.8 |
E019 | chr19 | 54207397 | 54207522 | TRUE | OK | 24382.9 | 0.00272 | 0.5559 | 0.8735 | -0.060 | -0.030 | 22792.6 | 33495.3 | 20814.3 | 23442.7 | 21830.1 | 23922.4 |
E020 | chr19 | 54207522 | 54207630 | TRUE | OK | 8213.6 | 0.0039 | 0.5422 | 0.8695 | 0.057 | 0.029 | 7520.3 | 11073.7 | 6654.7 | 8014.8 | 7274.1 | 8744.1 |
E021 | chr19 | 54207630 | 54207644 | TRUE | OK | 409.4 | 0.015 | 0.03547 | 0.5764 | -0.498 | -0.249 | 372.7 | 762.2 | 351.5 | 354.4 | 253.6 | 361.6 |
E022 | chr19 | 54207644 | 54207647 | TRUE | OK | 25.6 | 0.0274 | 0.2942 | 0.7897 | -0.447 | -0.224 | 20.7 | 52.1 | 19.1 | 17.9 | 26.4 | 17.4 |
E023 | chr19 | 54231740 | 54231936 | TRUE | OK | 18.0 | 0.0667 | 0.3154 | 0.7961 | -0.411 | -0.205 | 21.7 | 27.1 | 15.1 | 26.8 | 5.9 | 11.6 |
E024 | chr19 | 54247091 | 54249003 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.124 | 0.299 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 1.0 | 1.0 | 2.9 |
J025 | chr19 | 54200888 | 54201159 | TRUE | OK | 9288.0 | 0.00249 | 0.01621 | 0.4603 | 0.220 | 0.110 | 8200.6 | 10739.0 | 8290.5 | 9876.3 | 8873.3 | 9748.6 |
J026 | chr19 | 54200893 | 54201159 | TRUE | OK | 539.9 | 0.00128 | 0.0005428 | 0.09327 | 0.277 | 0.138 | 458.5 | 651.7 | 425.0 | 587.7 | 510.2 | 606.2 |
J027 | chr19 | 54200961 | 54201159 | TRUE | OK | 254.9 | 0.00516 | 0.6282 | 0.8971 | 0.085 | 0.042 | 223.8 | 295.1 | 255.8 | 230.3 | 255.6 | 268.8 |
J028 | chr19 | 54201281 | 54201486 | TRUE | OK | 25987.2 | 0.00258 | 0.08307 | 0.6811 | 0.167 | 0.083 | 23534.1 | 31830.1 | 23294.0 | 27120.0 | 24268.5 | 25876.4 |
J029 | chr19 | 54201609 | 54206275 | TRUE | OK | 19582.6 | 0.00278 | 0.05108 | 0.6276 | -0.178 | -0.089 | 18539.9 | 27679.0 | 17409.8 | 19131.1 | 16209.0 | 18526.5 |
J030 | chr19 | 54201609 | 54207397 | TRUE | OK | 168.3 | 0.00142 | 0.7898 | 0.947 | 0.033 | 0.016 | 152.8 | 226.3 | 142.0 | 170.8 | 146.9 | 171.1 |
J031 | chr19 | 54201609 | 54231740 | TRUE | OK | 17.9 | 0.0692 | 0.3385 | 0.8036 | -0.387 | -0.194 | 21.7 | 26.1 | 15.1 | 26.8 | 5.9 | 11.6 |
J032 | chr19 | 54206462 | 54206552 | TRUE | OK | 255.1 | 0.0133 | 2.453e-05 | 0.01103 | 0.893 | 0.446 | 214.0 | 191.9 | 160.1 | 301.8 | 332.0 | 330.7 |
J033 | chr19 | 54206462 | 54207397 | TRUE | OK | 21789.0 | 0.002 | 0.8007 | 0.9501 | -0.022 | -0.011 | 20433.1 | 29320.2 | 18657.8 | 21046.1 | 19666.9 | 21609.8 |
J034 | chr19 | 54206724 | 54207397 | TRUE | OK | 255.4 | 0.00202 | 2.972e-09 | 5.575e-06 | 0.626 | 0.313 | 196.2 | 281.5 | 157.1 | 297.8 | 303.6 | 295.9 |
J035 | chr19 | 54231936 | 54247091 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
N036 | chr19 | 54200888 | 54201165 | TRUE | OK | 13.7 | 0.0113 | 0.2235 | 0.7664 | 0.458 | 0.229 | 11.8 | 12.5 | 12.1 | 10.9 | 19.6 | 15.5 |
N037 | chr19 | 54201281 | 54206275 | TRUE | OK | 78.1 | 0.00521 | 0.8278 | 0.9572 | -0.024 | -0.012 | 85.8 | 90.7 | 69.5 | 78.4 | 77.4 | 66.7 |
N038 | chr19 | 54206462 | 54207370 | TRUE | OK | 17.6 | 0.0108 | 0.02562 | 0.5289 | 0.737 | 0.369 | 11.8 | 21.9 | 8.1 | 15.9 | 23.5 | 24.2 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000170889.14 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |