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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr3 | 97941817 | 97944405 | TRUE | OK | 1002.9 | 0.00148 | 0.1102 | 0.7082 | 0.124 | 0.062 | 1124.0 | 1093.8 | 1042.5 | 987.8 | 885.3 | 883.7 |
E002 | chr3 | 97944405 | 97944559 | TRUE | OK | 354.0 | 0.0152 | 0.4498 | 0.8395 | -0.173 | -0.086 | 366.8 | 508.8 | 364.6 | 327.6 | 257.6 | 298.8 |
E003 | chr3 | 97944559 | 97945176 | TRUE | OK | 928.6 | 0.00847 | 0.1387 | 0.7291 | -0.237 | -0.118 | 1041.2 | 1220.0 | 1011.3 | 833.9 | 725.6 | 739.6 |
E004 | chr3 | 97945176 | 97945337 | TRUE | OK | 444.8 | 0.00265 | 0.0207 | 0.4972 | -0.238 | -0.119 | 532.4 | 522.4 | 526.8 | 422.9 | 320.2 | 344.2 |
E005 | chr3 | 97945337 | 97945342 | TRUE | OK | 248.3 | 0.00185 | 0.0306 | 0.5542 | -0.229 | -0.115 | 292.8 | 301.3 | 290.1 | 219.4 | 193.9 | 192.4 |
E006 | chr3 | 97945342 | 97945797 | TRUE | OK | 38.3 | 0.0107 | 0.3344 | 0.8023 | -0.250 | -0.125 | 48.3 | 45.9 | 43.3 | 23.8 | 40.2 | 28.0 |
E007 | chr3 | 97945797 | 97945887 | TRUE | OK | 357.9 | 0.00157 | 0.1479 | 0.7339 | -0.134 | -0.067 | 427.9 | 405.6 | 406.9 | 342.5 | 287.9 | 276.5 |
E008 | chr3 | 97947360 | 97947401 | TRUE | OK | 286.1 | 0.002 | 0.8924 | 0.9742 | 0.011 | 0.006 | 342.1 | 279.4 | 331.4 | 274.0 | 242.9 | 246.5 |
E009 | chr3 | 97947401 | 97947415 | TRUE | OK | 287.2 | 0.00391 | 0.9075 | 0.9781 | -0.021 | -0.011 | 352.0 | 266.9 | 346.5 | 272.0 | 238.0 | 247.5 |
E010 | chr3 | 97947415 | 97947449 | TRUE | OK | 320.8 | 0.00462 | 0.887 | 0.9728 | 0.013 | 0.007 | 397.4 | 294.0 | 376.7 | 320.7 | 263.4 | 272.6 |
E011 | chr3 | 97949843 | 97950012 | TRUE | OK | 481.5 | 0.00248 | 0.3276 | 0.8002 | 0.097 | 0.048 | 567.0 | 457.8 | 542.9 | 491.4 | 418.2 | 411.9 |
E012 | chr3 | 97950012 | 97950015 | TRUE | OK | 208.3 | 0.00403 | 0.8452 | 0.9619 | 0.026 | 0.013 | 227.8 | 203.3 | 259.9 | 214.4 | 171.4 | 173.1 |
E013 | chr3 | 97950015 | 97950024 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.7 | 0.0277 | 0.6426 | NA | NA | NA | 8.9 | 10.4 | 8.1 | 9.9 | 6.9 | 1.9 |
E014 | chr3 | 97950785 | 97950888 | TRUE | OK | 402.5 | 0.00238 | 0.3217 | 0.7985 | 0.100 | 0.050 | 475.3 | 385.8 | 447.2 | 414.0 | 337.9 | 354.8 |
E015 | chr3 | 97950888 | 97951183 | TRUE | OK | 21.0 | 0.0196 | 0.4495 | 0.8394 | -0.272 | -0.136 | 29.6 | 29.2 | 17.1 | 14.9 | 21.5 | 13.5 |
E016 | chr3 | 97952151 | 97952252 | TRUE | OK | 19.2 | 0.0321 | 0.8173 | 0.9544 | -0.114 | -0.057 | 22.7 | 13.6 | 30.2 | 11.9 | 15.7 | 21.3 |
E017 | chr3 | 97954006 | 97954391 | TRUE | OK | 26.1 | 0.0265 | 0.626 | 0.8965 | 0.145 | 0.072 | 33.5 | 14.6 | 35.3 | 26.8 | 19.6 | 27.1 |
E018 | chr3 | 97954391 | 97954495 | TRUE | OK | 426.1 | 0.00346 | 0.2355 | 0.7709 | 0.133 | 0.067 | 500.9 | 390.0 | 481.5 | 440.8 | 365.3 | 378.0 |
E019 | chr3 | 97959050 | 97959179 | TRUE | OK | 514.8 | 0.00571 | 0.7453 | 0.934 | 0.035 | 0.017 | 652.7 | 466.1 | 586.2 | 500.4 | 432.8 | 450.5 |
E020 | chr3 | 97961588 | 97961678 | TRUE | OK | 511.5 | 0.00792 | 0.8647 | 0.9671 | 0.014 | 0.007 | 648.8 | 447.3 | 607.4 | 499.4 | 444.6 | 421.5 |
E021 | chr3 | 97961678 | 97961708 | TRUE | OK | 418.5 | 0.00707 | 0.6811 | 0.914 | -0.074 | -0.037 | 533.4 | 377.5 | 515.7 | 402.1 | 337.9 | 344.2 |
E022 | chr3 | 97967161 | 97967256 | TRUE | OK | 485.4 | 0.00685 | 0.8936 | 0.9745 | -0.032 | -0.016 | 628.1 | 436.9 | 571.1 | 467.6 | 402.5 | 406.1 |
E023 | chr3 | 97967256 | 97967623 | TRUE | OK | 599.7 | 0.00834 | 0.5826 | 0.8821 | 0.073 | 0.036 | 766.1 | 518.2 | 682.9 | 578.8 | 538.6 | 513.4 |
E024 | chr3 | 97967623 | 97967632 | TRUE | OK | 95.2 | 0.00854 | 0.4238 | 0.831 | 0.152 | 0.076 | 106.5 | 77.2 | 119.9 | 106.2 | 81.3 | 80.2 |
E025 | chr3 | 97971589 | 97971877 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.6 | 0.0658 | 0.2405 | NA | NA | NA | 6.9 | 4.2 | 3.0 | 7.9 | 2.0 | 9.7 |
E026 | chr3 | 97971913 | 97972087 | TRUE | OK | 44.7 | 0.00657 | 0.1868 | 0.7516 | 0.290 | 0.145 | 45.4 | 36.5 | 54.4 | 46.7 | 37.2 | 48.3 |
E027 | chr3 | 97972087 | 97972380 | TRUE | OK | 26.1 | 0.0233 | 0.8146 | 0.9539 | -0.064 | -0.032 | 28.6 | 24.0 | 36.3 | 31.8 | 12.7 | 23.2 |
E028 | chr3 | 97972380 | 97972431 | TRUE | OK | 47.3 | 0.0061 | 0.6773 | 0.9128 | -0.091 | -0.045 | 57.2 | 43.8 | 61.4 | 50.6 | 34.3 | 36.7 |
E029 | chr3 | 97972431 | 97972457 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.1 | 0.0354 | 0.4253 | NA | NA | NA | 5.9 | 3.1 | 7.1 | 3.0 | 2.0 | 3.9 |
J030 | chr3 | 97945342 | 97945797 | TRUE | OK | 238.4 | 0.00154 | 0.02602 | 0.5311 | -0.229 | -0.115 | 275.1 | 292.0 | 282.0 | 210.5 | 190.0 | 180.8 |
J031 | chr3 | 97945887 | 97947360 | TRUE | OK | 207.4 | 0.00158 | 0.9908 | 0.9978 | -0.003 | -0.001 | 253.4 | 205.4 | 234.7 | 207.5 | 173.3 | 170.2 |
J032 | chr3 | 97947449 | 97949843 | TRUE | OK | 254.4 | 0.00483 | 0.5315 | 0.8658 | 0.080 | 0.040 | 321.4 | 226.3 | 283.0 | 260.1 | 211.5 | 224.3 |
J033 | chr3 | 97950012 | 97950785 | TRUE | OK | 67.2 | 0.00319 | 0.4577 | 0.8421 | 0.125 | 0.062 | 85.8 | 67.8 | 62.4 | 66.5 | 63.7 | 57.0 |
J034 | chr3 | 97950015 | 97950785 | TRUE | OK | 204.8 | 0.00364 | 0.737 | 0.9317 | 0.043 | 0.022 | 220.9 | 199.2 | 255.8 | 211.5 | 169.4 | 172.1 |
J035 | chr3 | 97950888 | 97952151 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.2 | 0.0363 | 0.8626 | NA | NA | NA | 2.0 | 4.2 | 4.0 | 3.0 | 1.0 | 4.8 |
J036 | chr3 | 97950888 | 97954391 | TRUE | OK | 224.5 | 0.00258 | 0.4537 | 0.8406 | 0.086 | 0.043 | 272.1 | 209.6 | 249.8 | 234.3 | 185.1 | 196.3 |
J037 | chr3 | 97952252 | 97954391 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.0451 | 0.9384 | NA | NA | NA | 3.0 | 3.1 | 1.0 | 1.0 | 2.0 | 2.9 |
J038 | chr3 | 97954495 | 97959050 | TRUE | OK | 297.1 | 0.00316 | 0.06539 | 0.6554 | 0.212 | 0.106 | 344.1 | 260.7 | 328.4 | 309.8 | 259.5 | 280.4 |
J039 | chr3 | 97959179 | 97961588 | TRUE | OK | 325.9 | 0.0084 | 0.8882 | 0.9731 | 0.007 | 0.004 | 432.9 | 280.5 | 373.7 | 314.7 | 286.9 | 266.8 |
J040 | chr3 | 97961708 | 97967161 | TRUE | OK | 342.0 | 0.00506 | 0.4932 | 0.8536 | -0.100 | -0.050 | 437.8 | 319.1 | 418.0 | 328.6 | 270.3 | 278.4 |
J041 | chr3 | 97967632 | 97971589 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0701 | 0.5877 | NA | NA | NA | 5.9 | 4.2 | 1.0 | 6.9 | 2.0 | 2.9 |
J042 | chr3 | 97967632 | 97971913 | TRUE | OK | 34.5 | 0.00782 | 0.1576 | 0.738 | 0.345 | 0.173 | 31.6 | 26.1 | 45.3 | 35.7 | 33.3 | 34.8 |
J043 | chr3 | 97967632 | 97972380 | TRUE | OK | 43.5 | 0.00498 | 0.599 | 0.8876 | -0.113 | -0.057 | 54.2 | 40.7 | 55.4 | 47.7 | 33.3 | 30.0 |
N044 | chr3 | 97941306 | 97942283 | TRUE | OK | 78.7 | 0.00901 | 0.007158 | 0.3431 | 0.543 | 0.272 | 91.7 | 54.2 | 73.5 | 79.4 | 84.2 | 88.9 |
N045 | chr3 | 97942443 | 97943225 | TRUE | OK | 81.0 | 0.00582 | 5.01e-05 | 0.01891 | 0.744 | 0.372 | 85.8 | 58.4 | 65.5 | 108.2 | 76.4 | 91.8 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000170854.18 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |