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Normalized Counts Table (ENSG00000169180.11)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr16	28097978	28097994	TRUE	OK	40.2	0.0423	0.9318	0.9839	0.009	0.005	28.6	60.5	42.3	28.8	43.1	37.7
E002	chr16	28097994	28098618	TRUE	OK	1609.3	0.026	0.555	0.8732	-0.174	-0.087	1606.2	2309.6	1605.5	1425.6	1416.0	1292.7
E003	chr16	28098618	28098639	TRUE	OK	606.2	0.00803	0.8928	0.9743	0.020	0.010	699.1	693.4	582.2	565.9	552.3	544.3
E004	chr16	28101054	28101269	TRUE	OK	52.3	0.00851	0.181	0.7493	-0.302	-0.151	53.2	68.8	65.5	41.7	40.2	44.5
E005	chr16	28101269	28101457	TRUE	OK	59.1	0.00823	0.5004	0.8558	-0.149	-0.074	55.2	69.9	77.6	49.6	49.9	52.2
E006	chr16	28101457	28101688	TRUE	OK	1148.6	0.00443	0.1593	0.7386	0.168	0.084	1234.5	1206.4	1143.2	1173.5	1062.5	1071.3
E007	chr16	28101846	28101915	TRUE	OK	694.9	0.00339	0.007218	0.3445	0.292	0.146	727.7	670.5	680.9	763.5	636.5	690.3
E008	chr16	28101915	28101933	TRUE	OK	703.7	0.00741	0.1823	0.75	0.208	0.104	705.0	744.5	714.1	751.5	602.3	704.8
E009	chr16	28101933	28101945	TRUE	OK	704.3	0.00761	0.2155	0.7633	0.195	0.098	708.0	752.8	713.1	744.6	603.2	703.9
E010	chr16	28101945	28101986	TRUE	OK	15.7	0.12	0.6786	0.9131	0.280	0.140	4.9	19.8	22.2	26.8	11.8	8.7
E011	chr16	28104545	28104707	TRUE	OK	1211.1	0.0065	0.6753	0.912	0.063	0.031	1285.8	1342.0	1270.1	1203.3	1036.1	1129.3
E012	chr16	28105688	28106042	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.218	0.5008	NA	NA	NA	4.9	0.0	2.0	0.0	1.0	1.9
E013	chr16	28106042	28106111	TRUE	OK	1029.4	0.0051	0.9994	0.9998	0.002	0.001	1144.8	1133.4	1092.8	959.0	897.0	949.4
E014	chr16	28106111	28106214	TRUE	OK	1147.3	0.0029	0.9088	0.9784	0.012	0.006	1300.5	1187.7	1258.0	1091.1	988.1	1058.7
E015	chr16	28106382	28106422	TRUE	OK	922.4	0.00129	0.2083	0.7608	0.087	0.044	1058.0	867.5	1019.3	891.5	848.1	849.8
E016	chr16	28106422	28106452	TRUE	OK	844.0	0.00134	0.9511	0.9886	-0.008	-0.004	991.9	810.2	968.9	803.2	733.5	756.1
E017	chr16	28106452	28106497	TRUE	OK	790.7	0.000772	0.6676	0.9096	-0.029	-0.014	922.9	783.1	905.5	764.4	702.1	666.2
E018	chr16	28107521	28107528	TRUE	OK	716.4	0.000914	0.225	0.7668	-0.083	-0.041	849.9	722.6	831.0	696.9	618.9	579.1
E019	chr16	28107528	28107587	TRUE	OK	873.5	0.000766	0.2662	0.7812	-0.070	-0.035	1026.4	876.9	1015.3	845.9	765.8	710.6
E020	chr16	28107587	28107677	TRUE	OK	1055.9	0.000776	0.2426	0.773	-0.072	-0.036	1252.2	1056.3	1220.8	983.9	953.8	868.2
E021	chr16	28111816	28111890	TRUE	OK	837.8	0.00114	0.3167	0.7964	0.068	0.034	967.3	784.1	937.7	822.0	809.9	705.8
E022	chr16	28111890	28111942	TRUE	OK	731.2	0.00117	0.08698	0.6855	0.121	0.061	842.1	686.1	780.6	727.7	692.4	658.4
E023	chr16	28111942	28112006	TRUE	OK	736.8	0.00144	0.1132	0.7111	0.117	0.059	849.9	645.4	834.0	745.6	698.2	647.8
E024	chr16	28112903	28112958	TRUE	OK	621.7	0.00164	0.005826	0.3153	0.224	0.112	708.0	538.0	653.7	648.3	592.5	589.8
E025	chr16	28112958	28113050	TRUE	OK	694.3	0.00266	0.06322	0.6527	0.173	0.086	824.3	603.7	729.2	699.9	653.2	655.5
E026	chr16	28117036	28117317	FALSE	LOW_COUNTS_INDEP_FILTER	8.8	0.0199	0.5509	NA	NA	NA	10.8	7.3	8.1	11.9	4.9	9.7
E027	chr16	28117317	28117462	TRUE	OK	963.9	0.00167	0.4144	0.8285	0.058	0.029	1152.6	867.5	1083.8	959.0	871.6	848.9
E028	chr16	28121669	28121762	TRUE	OK	1039.0	0.00106	0.4901	0.8527	-0.050	-0.025	1228.6	984.3	1238.9	998.7	903.9	879.8
E029	chr16	28125688	28125768	TRUE	OK	994.6	0.00204	0.4522	0.8402	-0.071	-0.036	1178.3	914.5	1231.8	953.1	851.0	839.2
E030	chr16	28125768	28125828	TRUE	OK	1001.4	0.00251	0.87	0.9685	0.006	0.003	1150.7	897.8	1225.8	971.9	875.5	886.6
E031	chr16	28125828	28125831	TRUE	OK	801.9	0.00479	0.2298	0.7691	0.133	0.066	879.5	660.0	985.1	806.1	729.6	751.2
E032	chr16	28125831	28125848	TRUE	OK	849.8	0.00436	0.1832	0.7504	0.142	0.071	939.7	700.7	1027.4	853.8	777.5	799.6
E033	chr16	28126617	28126760	FALSE	LOW_COUNTS_INDEP_FILTER	4.1	0.0379	0.3791	NA	NA	NA	6.9	3.1	6.0	2.0	2.0	4.8
E034	chr16	28132333	28132363	TRUE	OK	879.4	0.00461	0.07133	0.665	0.202	0.101	986.0	700.7	1024.3	903.4	819.7	842.1
E035	chr16	28132363	28132397	TRUE	OK	839.8	0.00516	0.1352	0.7264	0.172	0.086	929.8	666.3	1016.3	860.7	787.3	778.3
E036	chr16	28132397	28132403	TRUE	OK	760.0	0.00538	0.1354	0.7266	0.178	0.089	832.2	603.7	922.6	800.2	693.3	707.7
E037	chr16	28133840	28133925	TRUE	OK	1047.2	0.00308	0.2776	0.784	0.098	0.049	1198.0	902.0	1233.8	1033.5	942.1	973.6
E038	chr16	28133925	28133933	TRUE	OK	649.5	0.00237	0.6929	0.9176	0.030	0.015	748.4	594.4	765.5	612.6	570.9	605.2
E039	chr16	28135215	28135324	TRUE	OK	893.5	0.00356	0.8123	0.9532	0.014	0.007	1060.0	786.2	1068.7	840.9	781.5	823.7
E040	chr16	28146090	28146093	FALSE	LOW_COUNTS_INDEP_FILTER	8.2	0.0302	0.5221	NA	NA	NA	5.9	11.5	12.1	9.9	5.9	3.9
E041	chr16	28146093	28146161	TRUE	OK	746.3	0.00518	0.8984	0.9757	0.001	0.000	919.9	632.9	891.4	709.8	637.5	686.5
E042	chr16	28146161	28146171	TRUE	OK	593.3	0.00978	0.8866	0.9728	0.002	0.001	751.3	463.0	728.2	605.6	479.8	531.8
E043	chr16	28146171	28146203	TRUE	OK	580.6	0.0105	0.9895	0.9975	-0.024	-0.012	733.6	449.4	732.3	582.8	467.1	518.2
E044	chr16	28146203	28146249	TRUE	OK	18.8	0.0132	0.03938	0.591	-0.703	-0.351	25.6	18.8	30.2	13.9	17.6	6.8
E045	chr16	28146249	28146303	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E046	chr16	28152658	28152785	TRUE	OK	816.9	0.0101	0.8041	0.951	-0.067	-0.033	1075.7	652.7	1000.2	815.1	650.2	707.7
E047	chr16	28152785	28152918	TRUE	OK	27.0	0.0328	0.9725	0.9934	-0.003	-0.002	44.4	20.9	23.2	34.7	21.5	17.4
E048	chr16	28152929	28152964	TRUE	OK	28.1	0.0188	0.03658	0.5814	0.665	0.333	25.6	30.2	17.1	27.8	33.3	34.8
E049	chr16	28152964	28153209	TRUE	OK	32.8	0.0137	0.0005437	0.09334	0.982	0.491	31.6	16.7	26.2	34.7	50.9	36.7
E050	chr16	28154587	28154612	TRUE	OK	16.5	0.0221	0.2073	0.7603	0.455	0.227	18.7	7.3	20.1	13.9	20.6	18.4
E051	chr16	28155596	28155701	TRUE	OK	19.3	0.0308	0.04673	0.6158	0.750	0.375	22.7	6.3	19.1	21.8	19.6	26.1
E052	chr16	28155701	28155771	TRUE	OK	21.6	0.0196	0.1923	0.7545	0.423	0.211	28.6	11.5	21.2	18.9	24.5	25.1
E053	chr16	28155771	28155945	TRUE	OK	27.1	0.0082	0.002101	0.1957	0.831	0.416	26.6	12.5	26.2	33.8	35.3	28.0
E054	chr16	28155945	28155975	TRUE	OK	20.6	0.0436	0.03129	0.558	0.862	0.431	27.6	6.3	15.1	24.8	23.5	26.1
E055	chr16	28156073	28156117	TRUE	OK	668.9	0.00796	0.8753	0.9697	0.001	0.001	855.9	530.7	803.8	664.2	567.0	591.7
E056	chr16	28156117	28156132	TRUE	OK	636.5	0.0105	0.6423	0.9018	0.049	0.025	819.4	477.6	757.4	606.6	569.0	588.8
E057	chr16	28156132	28156314	TRUE	OK	1026.4	0.00846	0.5843	0.8827	0.059	0.029	1305.5	795.6	1204.6	1010.7	933.3	908.8
E058	chr16	28156314	28156332	TRUE	OK	594.1	0.00723	0.1543	0.7364	0.191	0.095	726.7	444.2	663.8	621.5	573.9	534.7
E059	chr16	28156332	28156527	TRUE	OK	1012.4	0.00557	0.5663	0.877	0.058	0.029	1276.9	832.1	1152.3	1028.5	910.7	874.0
E060	chr16	28165270	28165419	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E061	chr16	28166507	28166585	TRUE	OK	653.9	0.00439	0.6048	0.8896	-0.073	-0.037	845.0	575.6	767.5	645.3	540.6	549.2
E062	chr16	28169749	28169844	TRUE	OK	660.0	0.00784	0.9053	0.9774	-0.043	-0.021	852.9	531.8	804.8	629.4	556.2	584.9
E063	chr16	28169844	28169901	TRUE	OK	588.4	0.0151	0.3376	0.8032	0.159	0.079	734.6	400.4	701.0	577.8	533.7	583.0
E064	chr16	28169901	28169909	TRUE	OK	475.1	0.0202	0.1142	0.7118	0.328	0.164	588.6	286.7	525.8	485.5	456.3	507.6
E065	chr16	28173064	28173122	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.1	0.406	NA	NA	NA	2.0	1.0	0.0	2.0	2.0	1.0
E066	chr16	28175897	28176057	TRUE	OK	890.4	0.016	0.1323	0.7245	0.276	0.138	1109.3	581.8	991.1	925.3	850.0	884.7
E067	chr16	28176057	28176095	TRUE	OK	667.0	0.0143	0.2025	0.7588	0.220	0.110	843.0	451.5	747.4	704.9	607.2	647.8
E068	chr16	28177219	28177332	TRUE	OK	901.9	0.014	0.2636	0.7802	0.189	0.094	1131.9	629.8	1030.4	959.0	788.3	872.1
E069	chr16	28180940	28181031	TRUE	OK	813.7	0.0152	0.4789	0.8491	0.112	0.056	1054.0	578.7	945.8	837.9	679.6	786.0
E070	chr16	28181031	28181122	TRUE	OK	15.1	0.0937	0.6947	0.9183	-0.186	-0.093	15.8	9.4	27.2	21.8	12.7	3.9
E071	chr16	28208986	28209055	TRUE	OK	64.8	0.0197	0.5272	0.8647	-0.197	-0.099	97.6	46.9	80.6	71.5	45.0	47.4
E072	chr16	28209055	28209122	TRUE	OK	28.5	0.0206	0.2646	0.7807	-0.388	-0.194	44.4	19.8	40.3	29.8	18.6	18.4
E073	chr16	28211365	28211476	TRUE	OK	787.3	0.0158	0.3553	0.8092	0.160	0.080	987.0	547.4	923.6	799.2	670.8	795.7
E074	chr16	28211476	28211550	TRUE	OK	313.8	0.0174	0.6621	0.9082	0.089	0.044	392.4	241.9	365.6	288.9	240.9	352.9
E075	chr16	28211550	28211869	TRUE	OK	757.8	0.0423	0.2043	0.7595	-0.366	-0.183	1033.3	669.4	1043.5	840.9	642.4	317.1
E076	chr16	28211869	28211920	TRUE	OK	261.0	0.155	0.1743	0.746	-0.607	-0.304	408.2	214.8	386.8	318.7	197.8	39.6
J077	chr16	28098618	28101457	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.264	0.9226	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	1.0
J078	chr16	28098639	28101457	TRUE	OK	512.2	0.00594	0.8537	0.9641	0.026	0.013	595.5	569.3	500.6	491.4	452.4	464.1
J079	chr16	28101688	28101846	TRUE	OK	568.0	0.00182	1.1e-05	0.005962	0.385	0.192	577.8	518.2	548.9	640.3	543.5	579.1
J080	chr16	28101945	28104545	TRUE	OK	661.4	0.0084	0.292	0.7893	0.176	0.088	657.7	715.3	680.9	695.0	555.3	664.2
J081	chr16	28104707	28106042	TRUE	OK	718.6	0.00672	0.7178	0.9254	-0.050	-0.025	800.6	837.3	751.4	664.2	609.1	648.7
J082	chr16	28106214	28106382	TRUE	OK	684.6	0.00156	0.01204	0.4157	0.196	0.098	763.2	604.8	743.3	682.0	644.4	670.0
J083	chr16	28106452	28107521	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0566	0.4759	NA	NA	NA	3.0	1.0	2.0	1.0	1.0	1.0
J084	chr16	28106497	28107521	TRUE	OK	702.7	0.000608	0.1603	0.7391	-0.087	-0.044	832.2	716.3	811.8	682.0	606.2	567.5
J085	chr16	28107677	28111816	TRUE	OK	646.5	0.000766	0.607	0.8903	0.032	0.016	747.4	620.4	729.2	614.5	620.9	546.3
J086	chr16	28111942	28112903	TRUE	OK	11.9	0.00976	0.703	0.9207	0.141	0.070	15.8	12.5	9.1	11.9	10.8	11.6
J087	chr16	28112006	28112903	TRUE	OK	487.4	0.000787	0.00269	0.2219	0.211	0.106	533.4	425.4	534.8	506.3	467.1	457.3
J088	chr16	28113050	28117317	TRUE	OK	479.3	0.00359	0.06791	0.6594	0.197	0.099	578.8	406.7	490.5	474.6	461.2	464.1
J089	chr16	28113050	28121669	FALSE	LOW_COUNTS_INDEP_FILTER	4.3	0.2	0.614	NA	NA	NA	5.9	6.3	3.0	1.0	8.8	1.0
J090	chr16	28117462	28121669	TRUE	OK	628.2	0.000944	0.8088	0.9523	-0.021	-0.010	753.3	582.9	733.3	626.5	553.3	520.2
J091	chr16	28121762	28125688	TRUE	OK	670.4	0.0011	0.07496	0.6704	-0.133	-0.067	805.6	650.7	825.9	629.4	545.5	565.6
J092	chr16	28125848	28126617	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.304	0.6426	NA	NA	NA	3.0	0.0	1.0	0.0	0.0	1.9
J093	chr16	28125848	28132333	TRUE	OK	740.0	0.0038	0.04903	0.6229	0.207	0.103	821.3	593.3	861.2	760.5	692.4	711.6
J094	chr16	28126760	28132333	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.0444	0.3063	NA	NA	NA	3.9	1.0	4.0	2.0	1.0	1.0
J095	chr16	28132403	28133840	TRUE	OK	746.5	0.00474	0.138	0.7284	0.168	0.084	817.4	600.6	905.5	787.3	674.7	693.2
J096	chr16	28133933	28135215	TRUE	OK	583.4	0.00137	0.6339	0.899	0.033	0.017	672.5	547.4	671.8	554.0	512.2	542.4
J097	chr16	28135324	28146093	TRUE	OK	543.9	0.00598	0.9071	0.9779	-0.000	-0.000	672.5	458.8	650.7	491.4	473.0	517.3
J098	chr16	28146203	28152658	TRUE	OK	523.6	0.0114	0.9613	0.991	-0.020	-0.010	667.5	398.3	659.7	520.2	422.1	473.7
J099	chr16	28152785	28152929	TRUE	OK	11.1	0.0829	0.05892	0.6457	1.150	0.575	3.0	11.5	9.1	7.9	18.6	16.4
J100	chr16	28152785	28156073	TRUE	OK	422.3	0.00658	0.3905	0.8206	-0.141	-0.070	551.2	360.8	529.8	416.0	324.1	351.9
J101	chr16	28152964	28154587	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.164	0.5698	NA	NA	NA	0.0	0.0	3.0	1.0	2.0	1.0
J102	chr16	28152964	28156073	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.192	0.08607	NA	NA	NA	1.0	1.0	1.0	2.0	8.8	1.0
J103	chr16	28154612	28155701	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J104	chr16	28155771	28155945	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.231	0.585	NA	NA	NA	2.0	2.1	0.0	0.0	0.0	1.9
J105	chr16	28155975	28156073	FALSE	LOW_COUNTS_INDEP_FILTER	6.1	0.0153	0.0159	NA	NA	NA	3.9	4.2	4.0	8.9	6.9	8.7
J106	chr16	28156527	28165270	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J107	chr16	28156527	28166507	TRUE	OK	493.8	0.00338	0.3188	0.7972	-0.119	-0.059	645.8	455.7	573.1	476.5	394.6	416.7
J108	chr16	28156527	28169749	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.555	0.502	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J109	chr16	28166585	28169749	TRUE	OK	446.1	0.00753	0.3369	0.803	-0.161	-0.080	587.7	391.0	553.0	432.9	326.1	385.8
J110	chr16	28169909	28173064	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.15	0.2876	NA	NA	NA	1.0	0.0	0.0	1.0	2.0	0.0
J111	chr16	28169909	28175897	TRUE	OK	457.1	0.0205	0.109	0.7068	0.339	0.169	562.0	276.3	504.6	467.6	438.7	493.1
J112	chr16	28176095	28177219	TRUE	OK	508.2	0.0134	0.2417	0.7728	0.199	0.100	638.9	351.4	574.1	543.1	446.6	495.0
J113	chr16	28177332	28180940	TRUE	OK	551.9	0.0115	0.3	0.7916	0.162	0.081	693.2	396.2	630.5	579.8	482.8	528.9
J114	chr16	28177332	28211365	TRUE	OK	30.1	0.00444	0.001429	0.1607	0.769	0.384	26.6	18.8	29.2	35.7	33.3	36.7
J115	chr16	28181031	28208986	TRUE	OK	40.0	0.0295	0.6356	0.8996	-0.171	-0.085	63.1	30.2	44.3	47.7	22.5	31.9
J116	chr16	28181031	28211365	TRUE	OK	552.7	0.0207	0.4039	0.8252	0.158	0.079	712.9	362.9	648.7	571.8	457.3	562.7
J117	chr16	28209055	28211365	TRUE	OK	23.7	0.00825	0.9785	0.9948	-0.000	-0.000	32.5	17.7	27.2	25.8	15.7	23.2
J118	chr16	28209122	28211365	TRUE	OK	20.1	0.0383	0.5749	0.8798	-0.278	-0.139	31.6	10.4	29.2	22.8	13.7	12.6
N119	chr16	28133930	28135215	TRUE	OK	23.9	0.0164	0.5411	0.8692	-0.223	-0.112	24.7	18.8	40.3	17.9	21.5	20.3
N120	chr16	28166585	28166667	TRUE	OK	19.0	0.00932	5.309e-05	0.01976	1.299	0.650	12.8	8.3	16.1	23.8	32.3	20.3
N121	chr16	28176095	28180940	TRUE	OK	33.3	0.00543	0.3646	0.8119	0.208	0.104	40.4	25.0	36.3	27.8	37.2	32.9

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000169180.11
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE