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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr17 | 19377720 | 19377752 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.4 | 0.0378 | 0.8552 | NA | NA | NA | 11.8 | 5.2 | 3.0 | 6.9 | 9.8 | 7.7 |
E002 | chr17 | 19377752 | 19377798 | TRUE | OK | 16.5 | 0.0265 | 0.4399 | 0.8362 | 0.277 | 0.138 | 22.7 | 8.3 | 10.1 | 16.9 | 21.5 | 19.3 |
E003 | chr17 | 19377798 | 19377991 | TRUE | OK | 77.4 | 0.0243 | 0.1284 | 0.7223 | 0.394 | 0.197 | 92.7 | 39.6 | 53.4 | 86.4 | 94.0 | 98.6 |
E004 | chr17 | 19377991 | 19378101 | TRUE | OK | 109.0 | 0.0135 | 0.2312 | 0.7696 | 0.255 | 0.128 | 116.3 | 62.6 | 97.7 | 106.2 | 123.4 | 147.9 |
E005 | chr17 | 19378252 | 19378259 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.8 | 0.0237 | 0.8672 | NA | NA | NA | 6.9 | 6.3 | 5.0 | 4.0 | 7.8 | 10.6 |
E006 | chr17 | 19378259 | 19378281 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.4 | 0.0283 | 0.921 | NA | NA | NA | 8.9 | 6.3 | 5.0 | 4.0 | 7.8 | 12.6 |
E007 | chr17 | 19378281 | 19378398 | TRUE | OK | 13.5 | 0.0649 | 0.9134 | 0.9796 | 0.169 | 0.085 | 11.8 | 9.4 | 14.1 | 6.0 | 12.7 | 27.1 |
E008 | chr17 | 19378398 | 19378402 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.121 | 0.8128 | NA | NA | NA | 6.9 | 7.3 | 9.1 | 4.0 | 3.9 | 20.3 |
E009 | chr17 | 19378402 | 19378467 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.2 | 0.0988 | 0.7726 | NA | NA | NA | 6.9 | 6.3 | 9.1 | 6.0 | 4.9 | 22.2 |
E010 | chr17 | 19378467 | 19378497 | TRUE | OK | 17.7 | 0.0323 | 0.8413 | 0.961 | -0.117 | -0.058 | 26.6 | 10.4 | 14.1 | 18.9 | 13.7 | 22.2 |
E011 | chr17 | 19378497 | 19378503 | TRUE | OK | 24.9 | 0.0293 | 0.5745 | 0.8796 | 0.157 | 0.079 | 34.5 | 11.5 | 19.1 | 26.8 | 28.4 | 29.0 |
E012 | chr17 | 19378503 | 19378508 | TRUE | OK | 33.4 | 0.0561 | 0.545 | 0.8702 | 0.145 | 0.072 | 51.3 | 13.6 | 23.2 | 33.8 | 43.1 | 35.8 |
E013 | chr17 | 19378508 | 19378526 | TRUE | OK | 44.4 | 0.0494 | 0.7871 | 0.9462 | 0.004 | 0.002 | 65.1 | 18.8 | 39.3 | 49.6 | 50.9 | 42.5 |
E014 | chr17 | 19378526 | 19378528 | TRUE | OK | 45.8 | 0.0446 | 0.5917 | 0.8852 | 0.113 | 0.057 | 65.1 | 19.8 | 37.3 | 50.6 | 55.8 | 46.4 |
E015 | chr17 | 19378528 | 19378542 | TRUE | OK | 65.1 | 0.0208 | 0.9689 | 0.9926 | -0.045 | -0.022 | 82.8 | 38.6 | 62.4 | 65.5 | 80.3 | 60.9 |
E016 | chr17 | 19378542 | 19378554 | TRUE | OK | 33.8 | 0.0219 | 0.4812 | 0.8498 | 0.193 | 0.097 | 44.4 | 19.8 | 23.2 | 33.8 | 44.1 | 37.7 |
E017 | chr17 | 19378554 | 19378630 | TRUE | OK | 58.4 | 0.0196 | 0.1419 | 0.731 | 0.376 | 0.188 | 69.0 | 33.4 | 38.3 | 69.5 | 71.5 | 68.6 |
E018 | chr17 | 19378630 | 19378748 | TRUE | OK | 16.3 | 0.0165 | 0.7355 | 0.9313 | 0.128 | 0.064 | 19.7 | 11.5 | 12.1 | 10.9 | 20.6 | 23.2 |
E019 | chr17 | 19378748 | 19378750 | TRUE | OK | 10.3 | 0.0588 | 0.2352 | 0.7708 | 0.651 | 0.325 | 12.8 | 3.1 | 6.0 | 6.9 | 14.7 | 18.4 |
E020 | chr17 | 19378750 | 19378891 | TRUE | OK | 20.9 | 0.0749 | 0.4214 | 0.8304 | 0.520 | 0.260 | 23.7 | 11.5 | 12.1 | 10.9 | 23.5 | 43.5 |
E021 | chr17 | 19378891 | 19378895 | TRUE | OK | 15.9 | 0.0608 | 0.4209 | 0.8302 | 0.510 | 0.255 | 15.8 | 9.4 | 11.1 | 7.9 | 18.6 | 32.9 |
E022 | chr17 | 19378895 | 19379132 | TRUE | OK | 262.3 | 0.0159 | 0.2563 | 0.7777 | 0.225 | 0.112 | 279.0 | 154.3 | 245.8 | 265.1 | 322.2 | 307.5 |
E023 | chr17 | 19379132 | 19379592 | TRUE | OK | 19.1 | 0.00986 | 0.4547 | 0.8409 | -0.232 | -0.116 | 17.7 | 17.7 | 22.2 | 12.9 | 23.5 | 20.3 |
E024 | chr17 | 19379592 | 19379605 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.5 | 0.0675 | 0.9124 | NA | NA | NA | 3.0 | 11.5 | 7.1 | 5.0 | 11.8 | 6.8 |
E025 | chr17 | 19379605 | 19379781 | TRUE | OK | 14.5 | 0.0406 | 0.7374 | 0.9319 | -0.160 | -0.080 | 6.9 | 17.7 | 18.1 | 10.9 | 19.6 | 13.5 |
E026 | chr17 | 19379781 | 19379947 | TRUE | OK | 190.5 | 0.00829 | 0.2554 | 0.7776 | 0.186 | 0.093 | 183.4 | 122.0 | 192.4 | 198.6 | 214.5 | 232.0 |
E027 | chr17 | 19379947 | 19379961 | TRUE | OK | 36.2 | 0.00693 | 0.7287 | 0.9291 | 0.079 | 0.040 | 33.5 | 22.9 | 41.3 | 34.7 | 42.1 | 42.5 |
E028 | chr17 | 19379961 | 19380083 | TRUE | OK | 52.1 | 0.0222 | 0.3688 | 0.8131 | 0.235 | 0.118 | 47.3 | 25.0 | 60.4 | 52.6 | 58.8 | 68.6 |
E029 | chr17 | 19380083 | 19380166 | TRUE | OK | 46.0 | 0.0175 | 0.5261 | 0.8643 | 0.159 | 0.079 | 47.3 | 22.9 | 50.4 | 41.7 | 55.8 | 58.0 |
E030 | chr17 | 19380166 | 19380231 | TRUE | OK | 38.9 | 0.008 | 0.1161 | 0.7131 | 0.376 | 0.188 | 31.6 | 20.9 | 41.3 | 42.7 | 46.0 | 51.2 |
E031 | chr17 | 19380231 | 19380394 | TRUE | OK | 53.8 | 0.00808 | 0.01643 | 0.463 | 0.525 | 0.263 | 46.3 | 26.1 | 49.4 | 66.5 | 66.6 | 67.7 |
E032 | chr17 | 19380394 | 19380472 | TRUE | OK | 53.4 | 0.0128 | 0.003115 | 0.2381 | 0.733 | 0.366 | 48.3 | 24.0 | 38.3 | 74.5 | 70.5 | 64.8 |
E033 | chr17 | 19380472 | 19380483 | TRUE | OK | 46.9 | 0.00595 | 1.588e-05 | 0.007963 | 0.960 | 0.480 | 34.5 | 20.9 | 32.2 | 66.5 | 65.6 | 61.9 |
E034 | chr17 | 19380483 | 19380501 | TRUE | OK | 53.8 | 0.00468 | 4.494e-06 | 0.002915 | 0.938 | 0.469 | 40.4 | 25.0 | 36.3 | 71.5 | 72.5 | 77.3 |
E035 | chr17 | 19380501 | 19380607 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.6 | 0.0919 | 0.8286 | NA | NA | NA | 3.9 | 5.2 | 17.1 | 6.9 | 14.7 | 9.7 |
E036 | chr17 | 19380607 | 19380623 | TRUE | OK | 120.9 | 0.0108 | 0.005303 | 0.3033 | 0.559 | 0.280 | 99.6 | 63.6 | 109.8 | 150.9 | 143.0 | 158.6 |
E037 | chr17 | 19380623 | 19380680 | TRUE | OK | 141.0 | 0.0124 | 0.04101 | 0.5972 | 0.416 | 0.208 | 113.4 | 83.4 | 141.0 | 173.7 | 158.6 | 176.0 |
E038 | chr17 | 19380680 | 19380860 | TRUE | OK | 185.6 | 0.00832 | 0.5233 | 0.8632 | 0.101 | 0.050 | 167.6 | 134.5 | 197.4 | 207.5 | 212.5 | 194.3 |
E039 | chr17 | 19380860 | 19380933 | TRUE | OK | 119.3 | 0.00458 | 0.728 | 0.9288 | -0.061 | -0.031 | 119.3 | 89.7 | 129.9 | 115.2 | 138.1 | 123.8 |
E040 | chr17 | 19380933 | 19381113 | TRUE | OK | 161.1 | 0.00427 | 0.9422 | 0.9864 | -0.017 | -0.008 | 173.5 | 118.9 | 158.1 | 151.9 | 187.0 | 176.9 |
E041 | chr17 | 19381113 | 19381213 | TRUE | OK | 127.9 | 0.00282 | 0.8571 | 0.9651 | 0.022 | 0.011 | 128.2 | 97.0 | 127.9 | 127.1 | 144.0 | 143.1 |
E042 | chr17 | 19381213 | 19381686 | TRUE | OK | 352.8 | 0.00201 | 0.07205 | 0.666 | 0.184 | 0.092 | 331.3 | 268.0 | 330.4 | 352.4 | 413.3 | 421.5 |
E043 | chr17 | 19381686 | 19381780 | TRUE | OK | 57.5 | 0.00403 | 0.5336 | 0.8666 | -0.117 | -0.059 | 51.3 | 55.3 | 60.4 | 52.6 | 62.7 | 62.8 |
E044 | chr17 | 19381780 | 19382088 | TRUE | OK | 285.2 | 0.00511 | 0.842 | 0.9612 | -0.030 | -0.015 | 268.2 | 281.5 | 251.8 | 301.8 | 299.7 | 308.4 |
E045 | chr17 | 19382088 | 19382466 | TRUE | OK | 287.3 | 0.00574 | 0.2308 | 0.7695 | -0.177 | -0.089 | 271.2 | 302.4 | 269.9 | 284.9 | 287.9 | 307.5 |
E046 | chr17 | 19382812 | 19382946 | TRUE | OK | 221.6 | 0.00713 | 0.09929 | 0.6973 | -0.270 | -0.135 | 211.0 | 244.0 | 215.5 | 210.5 | 205.6 | 242.7 |
E047 | chr17 | 19383077 | 19383339 | TRUE | OK | 294.7 | 0.0161 | 0.08418 | 0.6823 | -0.392 | -0.196 | 295.8 | 365.0 | 257.8 | 250.2 | 288.9 | 310.4 |
E048 | chr17 | 19383339 | 19383538 | TRUE | OK | 142.3 | 0.0183 | 0.1177 | 0.714 | -0.402 | -0.201 | 141.0 | 189.8 | 119.9 | 120.1 | 141.0 | 142.1 |
E049 | chr17 | 19383538 | 19383543 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0645 | 0.2163 | NA | NA | NA | 3.0 | 2.1 | 4.0 | 2.0 | 0.0 | 2.9 |
E050 | chr17 | 19383543 | 19383544 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.114 | 0.4087 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 2.0 | 0.0 | 1.0 |
J051 | chr17 | 19378101 | 19378895 | TRUE | OK | 54.6 | 0.00656 | 0.2566 | 0.7778 | 0.239 | 0.119 | 54.2 | 32.3 | 52.4 | 48.6 | 68.5 | 71.5 |
J052 | chr17 | 19378101 | 19380607 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.0556 | 0.3525 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 3.0 | 1.0 | 2.9 |
J053 | chr17 | 19378101 | 19381780 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.4942 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J054 | chr17 | 19378101 | 19382812 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.6413 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J055 | chr17 | 19378398 | 19378895 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0908 | 0.3963 | NA | NA | NA | 2.0 | 0.0 | 3.0 | 0.0 | 2.0 | 1.0 |
J056 | chr17 | 19378402 | 19378895 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.235 | 0.3978 | NA | NA | NA | 1.0 | 3.1 | 1.0 | 0.0 | 0.0 | 2.9 |
J057 | chr17 | 19378542 | 19378895 | TRUE | OK | 33.0 | 0.0385 | 0.8706 | 0.9687 | -0.105 | -0.053 | 41.4 | 15.6 | 38.3 | 31.8 | 44.1 | 27.1 |
J058 | chr17 | 19378542 | 19380607 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0812 | 0.8866 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 2.0 | 1.0 | 1.0 |
J059 | chr17 | 19378630 | 19378895 | TRUE | OK | 44.3 | 0.0334 | 0.07784 | 0.6748 | 0.572 | 0.286 | 51.3 | 19.8 | 27.2 | 59.6 | 59.7 | 48.3 |
J060 | chr17 | 19379132 | 19379592 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J061 | chr17 | 19379132 | 19379781 | TRUE | OK | 110.0 | 0.00697 | 0.2672 | 0.7813 | 0.189 | 0.094 | 114.4 | 67.8 | 103.7 | 115.2 | 123.4 | 135.4 |
J062 | chr17 | 19379605 | 19379781 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.6396 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
J063 | chr17 | 19379947 | 19380394 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.24 | 0.3157 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 5.0 | 3.9 | 0.0 |
J064 | chr17 | 19379947 | 19380483 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.4 | 0.0806 | 0.03365 | NA | NA | NA | 5.9 | 0.0 | 3.0 | 8.9 | 5.9 | 14.5 |
J065 | chr17 | 19379947 | 19380607 | TRUE | OK | 61.3 | 0.016 | 0.2346 | 0.7706 | 0.285 | 0.143 | 50.3 | 33.4 | 69.5 | 69.5 | 67.6 | 77.3 |
J066 | chr17 | 19380501 | 19380607 | TRUE | OK | 45.7 | 0.00428 | 1.535e-07 | 0.0001765 | 1.135 | 0.568 | 33.5 | 18.8 | 26.2 | 66.5 | 63.7 | 65.7 |
J067 | chr17 | 19381686 | 19381780 | TRUE | OK | 88.5 | 0.00209 | 0.03994 | 0.5934 | 0.308 | 0.154 | 82.8 | 62.6 | 74.5 | 94.3 | 109.7 | 107.3 |
J068 | chr17 | 19382466 | 19382812 | TRUE | OK | 104.8 | 0.00391 | 0.2892 | 0.7882 | -0.166 | -0.083 | 90.7 | 110.5 | 107.8 | 97.3 | 105.8 | 117.0 |
J069 | chr17 | 19382946 | 19383077 | TRUE | OK | 151.2 | 0.0117 | 0.1857 | 0.7511 | -0.273 | -0.136 | 149.9 | 176.2 | 134.0 | 144.9 | 132.2 | 170.2 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000166484.20 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |