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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr18 | 24138955 | 24138986 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.362 | 0.2919 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 3.9 | 1.0 |
| E002 | chr18 | 24138986 | 24139016 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0542 | 0.2992 | NA | NA | NA | 5.9 | 1.0 | 1.0 | 6.0 | 4.9 | 3.9 |
| E003 | chr18 | 24139016 | 24139031 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.6 | 0.0272 | 0.7843 | NA | NA | NA | 6.9 | 5.2 | 3.0 | 7.9 | 4.9 | 5.8 |
| E004 | chr18 | 24139031 | 24139057 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.0162 | 0.2499 | NA | NA | NA | 11.8 | 8.3 | 9.1 | 7.9 | 7.8 | 6.8 |
| E005 | chr18 | 24139057 | 24139061 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.0162 | 0.2499 | NA | NA | NA | 11.8 | 8.3 | 9.1 | 7.9 | 7.8 | 6.8 |
| E006 | chr18 | 24139061 | 24139062 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.0 | 0.0159 | 0.2518 | NA | NA | NA | 11.8 | 9.4 | 9.1 | 8.9 | 7.8 | 6.8 |
| E007 | chr18 | 24139062 | 24139067 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.5 | 0.0156 | 0.2131 | NA | NA | NA | 13.8 | 9.4 | 9.1 | 8.9 | 7.8 | 7.7 |
| E008 | chr18 | 24139067 | 24139094 | TRUE | OK | 128.2 | 0.00936 | 0.1614 | 0.7398 | -0.281 | -0.140 | 159.7 | 102.2 | 136.0 | 130.1 | 99.9 | 141.2 |
| E009 | chr18 | 24139094 | 24139096 | TRUE | OK | 138.4 | 0.00864 | 0.3045 | 0.7929 | -0.200 | -0.100 | 165.6 | 107.4 | 146.0 | 141.0 | 112.6 | 157.6 |
| E010 | chr18 | 24139096 | 24139118 | TRUE | OK | 149.4 | 0.00929 | 0.4755 | 0.848 | -0.147 | -0.073 | 179.5 | 110.5 | 155.1 | 150.9 | 127.3 | 173.1 |
| E011 | chr18 | 24139483 | 24139519 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.171 | 0.798 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 2.0 | 1.0 | 0.0 |
| E012 | chr18 | 24139624 | 24139798 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.189 | 0.4927 | NA | NA | NA | 1.0 | 3.1 | 0.0 | 5.0 | 2.0 | 1.0 |
| E013 | chr18 | 24139950 | 24140267 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.342 | 0.02587 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 6.9 | 1.0 | 1.0 |
| E014 | chr18 | 24143090 | 24143129 | TRUE | OK | 155.1 | 0.0158 | 0.6484 | 0.9039 | -0.124 | -0.062 | 187.3 | 106.4 | 165.2 | 165.8 | 126.3 | 179.8 |
| E015 | chr18 | 24143129 | 24143259 | TRUE | OK | 212.8 | 0.0152 | 0.7046 | 0.9212 | -0.106 | -0.053 | 252.4 | 147.0 | 225.6 | 219.4 | 187.0 | 245.6 |
| E016 | chr18 | 24143359 | 24143413 | TRUE | OK | 159.6 | 0.0109 | 0.5013 | 0.856 | -0.153 | -0.076 | 194.2 | 113.7 | 168.2 | 156.9 | 142.0 | 182.7 |
| E017 | chr18 | 24148574 | 24148725 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.5 | 0.0219 | 0.9908 | NA | NA | NA | 5.9 | 8.3 | 7.1 | 8.9 | 4.9 | 9.7 |
| E018 | chr18 | 24150537 | 24150624 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0762 | 0.1789 | NA | NA | NA | 1.0 | 4.2 | 6.0 | 9.9 | 9.8 | 3.9 |
| E019 | chr18 | 24150624 | 24150631 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0704 | 0.6751 | NA | NA | NA | 1.0 | 4.2 | 6.0 | 2.0 | 4.9 | 2.9 |
| E020 | chr18 | 24152643 | 24152657 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.043 | 0.2283 | NA | NA | NA | 3.0 | 1.0 | 2.0 | 5.0 | 2.9 | 4.8 |
| E021 | chr18 | 24152657 | 24152726 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0378 | 0.1555 | NA | NA | NA | 3.0 | 1.0 | 3.0 | 6.9 | 3.9 | 4.8 |
| E022 | chr18 | 24152726 | 24152822 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0428 | 0.3479 | NA | NA | NA | 2.0 | 2.1 | 3.0 | 6.0 | 3.9 | 2.9 |
| E023 | chr18 | 24155700 | 24155703 | TRUE | OK | 146.6 | 0.00608 | 0.5276 | 0.8648 | -0.119 | -0.059 | 176.5 | 106.4 | 150.1 | 145.9 | 139.1 | 161.5 |
| E024 | chr18 | 24155703 | 24155754 | TRUE | OK | 183.6 | 0.00793 | 0.7646 | 0.9396 | -0.069 | -0.034 | 223.8 | 135.6 | 174.2 | 183.7 | 176.3 | 207.9 |
| E025 | chr18 | 24155754 | 24155868 | TRUE | OK | 246.6 | 0.00401 | 0.05745 | 0.6425 | -0.267 | -0.133 | 299.7 | 205.4 | 249.8 | 231.3 | 251.7 | 241.7 |
| E026 | chr18 | 24155868 | 24155905 | TRUE | OK | 178.1 | 0.00659 | 0.021 | 0.4993 | -0.395 | -0.198 | 232.7 | 153.3 | 182.3 | 159.8 | 182.1 | 158.6 |
| E027 | chr18 | 24155905 | 24155934 | TRUE | OK | 179.6 | 0.01 | 0.09795 | 0.6966 | -0.333 | -0.166 | 234.7 | 150.2 | 178.3 | 161.8 | 194.9 | 157.6 |
| E028 | chr18 | 24155934 | 24155939 | TRUE | OK | 156.2 | 0.0103 | 0.1072 | 0.7049 | -0.323 | -0.162 | 196.2 | 132.4 | 161.2 | 134.0 | 178.2 | 135.4 |
| E029 | chr18 | 24155939 | 24156042 | TRUE | OK | 206.2 | 0.00327 | 0.1701 | 0.7443 | -0.185 | -0.092 | 240.6 | 177.3 | 201.4 | 190.6 | 220.3 | 206.9 |
| E030 | chr18 | 24156042 | 24156103 | TRUE | OK | 51.8 | 0.00704 | 0.03179 | 0.5602 | 0.478 | 0.239 | 37.5 | 43.8 | 42.3 | 67.5 | 51.9 | 67.7 |
| E031 | chr18 | 24156103 | 24156197 | TRUE | OK | 69.6 | 0.00491 | 0.01486 | 0.4467 | 0.459 | 0.229 | 51.3 | 51.1 | 65.5 | 89.4 | 77.4 | 83.1 |
| E032 | chr18 | 24156197 | 24156999 | TRUE | OK | 206.2 | 0.00302 | 1.775e-05 | 0.008663 | 0.553 | 0.276 | 187.3 | 131.4 | 174.2 | 256.1 | 233.1 | 255.2 |
| E033 | chr18 | 24159471 | 24159572 | TRUE | OK | 210.5 | 0.00512 | 0.8136 | 0.9535 | 0.024 | 0.012 | 242.6 | 157.5 | 195.4 | 211.5 | 233.1 | 223.3 |
| E034 | chr18 | 24159572 | 24159662 | TRUE | OK | 203.5 | 0.00259 | 0.5199 | 0.8623 | 0.075 | 0.038 | 219.9 | 154.3 | 192.4 | 208.5 | 223.3 | 222.4 |
| E035 | chr18 | 24159662 | 24159815 | TRUE | OK | 266.7 | 0.00183 | 0.08252 | 0.6805 | -0.190 | -0.095 | 288.9 | 238.8 | 272.0 | 247.2 | 270.3 | 283.3 |
| E036 | chr18 | 24159815 | 24159942 | TRUE | OK | 233.4 | 0.0122 | 0.198 | 0.7568 | -0.252 | -0.126 | 218.9 | 260.7 | 233.7 | 216.4 | 224.3 | 246.5 |
| E037 | chr18 | 24159942 | 24159945 | TRUE | OK | 103.3 | 0.022 | 0.6419 | 0.9017 | -0.124 | -0.062 | 79.9 | 121.0 | 105.8 | 98.3 | 93.0 | 121.8 |
| E038 | chr18 | 24159945 | 24160069 | TRUE | OK | 140.6 | 0.0175 | 0.3051 | 0.7931 | -0.248 | -0.124 | 123.3 | 170.0 | 139.0 | 127.1 | 137.1 | 147.0 |
| E039 | chr18 | 24160069 | 24160265 | TRUE | OK | 57.0 | 0.00412 | 0.736 | 0.9315 | 0.065 | 0.033 | 53.2 | 49.0 | 56.4 | 54.6 | 65.6 | 62.8 |
| E040 | chr18 | 24161515 | 24161582 | TRUE | OK | 39.7 | 0.0328 | 0.2489 | 0.7752 | -0.431 | -0.215 | 33.5 | 60.5 | 36.3 | 34.7 | 39.2 | 33.8 |
| E041 | chr18 | 24161582 | 24161588 | TRUE | OK | 14.0 | 0.011 | 0.01439 | 0.4428 | -0.902 | -0.451 | 20.7 | 13.6 | 18.1 | 10.9 | 10.8 | 9.7 |
| E042 | chr18 | 24161588 | 24161597 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.0 | 0.0234 | 0.1762 | NA | NA | NA | 13.8 | 8.3 | 6.0 | 7.9 | 6.9 | 4.8 |
| E043 | chr18 | 24161597 | 24161599 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.134 | 0.7215 | NA | NA | NA | 1.0 | 0.0 | 3.0 | 1.0 | 1.0 | 3.9 |
| E044 | chr18 | 24161599 | 24161600 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.134 | 0.7215 | NA | NA | NA | 1.0 | 0.0 | 3.0 | 1.0 | 1.0 | 3.9 |
| E045 | chr18 | 24161600 | 24161603 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.274 | 0.9574 | NA | NA | NA | 1.0 | 0.0 | 3.0 | 0.0 | 1.0 | 3.9 |
| J046 | chr18 | 24139118 | 24139950 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J047 | chr18 | 24139118 | 24143090 | TRUE | OK | 137.3 | 0.0107 | 0.5429 | 0.8697 | -0.135 | -0.067 | 162.7 | 99.1 | 146.0 | 144.0 | 113.6 | 158.6 |
| J048 | chr18 | 24139118 | 24143129 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.0834 | 0.3627 | NA | NA | NA | 2.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 |
| J049 | chr18 | 24139118 | 24155700 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.6 | 0.0134 | 0.7868 | NA | NA | NA | 12.8 | 6.3 | 7.1 | 6.9 | 11.8 | 12.6 |
| J050 | chr18 | 24139519 | 24143090 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J051 | chr18 | 24139798 | 24143090 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J052 | chr18 | 24140267 | 24155703 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J053 | chr18 | 24143259 | 24143359 | TRUE | OK | 113.8 | 0.0156 | 0.9736 | 0.9936 | -0.034 | -0.017 | 142.0 | 71.9 | 113.8 | 115.2 | 101.8 | 138.3 |
| J054 | chr18 | 24143259 | 24155700 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0797 | 0.6114 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 2.0 | 1.0 | 0.0 |
| J055 | chr18 | 24143413 | 24148574 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.265 | 0.9313 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 |
| J056 | chr18 | 24143413 | 24150537 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.264 | 0.9331 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
| J057 | chr18 | 24143413 | 24155700 | TRUE | OK | 126.6 | 0.00541 | 0.5019 | 0.8562 | -0.123 | -0.062 | 152.8 | 91.8 | 129.9 | 127.1 | 117.5 | 140.2 |
| J058 | chr18 | 24148725 | 24155700 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.137 | 0.5207 | NA | NA | NA | 0.0 | 4.2 | 3.0 | 1.0 | 1.0 | 2.9 |
| J059 | chr18 | 24150624 | 24155700 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J060 | chr18 | 24150631 | 24152657 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J061 | chr18 | 24150631 | 24155700 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.263 | 0.2021 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J062 | chr18 | 24152822 | 24155700 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J063 | chr18 | 24156042 | 24159471 | TRUE | OK | 81.2 | 0.00338 | 0.005083 | 0.2985 | -0.473 | -0.236 | 105.5 | 70.9 | 91.7 | 64.5 | 82.3 | 72.5 |
| J064 | chr18 | 24156042 | 24159945 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.483 | 0.2006 | NA | NA | NA | 1.0 | 5.2 | 0.0 | 1.0 | 0.0 | 0.0 |
| J065 | chr18 | 24156999 | 24159471 | TRUE | OK | 47.5 | 0.00334 | 0.006081 | 0.3218 | 0.550 | 0.275 | 45.4 | 28.2 | 36.3 | 57.6 | 54.8 | 62.8 |
| J066 | chr18 | 24156999 | 24159942 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.556 | 0.6172 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| J067 | chr18 | 24156999 | 24159945 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J068 | chr18 | 24156999 | 24161515 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J069 | chr18 | 24160069 | 24161515 | TRUE | OK | 32.2 | 0.0337 | 0.08314 | 0.6811 | -0.650 | -0.325 | 29.6 | 50.1 | 33.2 | 29.8 | 30.4 | 20.3 |
| N070 | chr18 | 24159828 | 24161896 | TRUE | OK | 16.2 | 0.0407 | 0.7203 | 0.9262 | -0.167 | -0.083 | 11.8 | 24.0 | 13.1 | 19.9 | 15.7 | 12.6 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000154040.20 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |