Normalized Counts Table (ENSG00000153558.15)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr3	33277024	33277096	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E002	chr3	33277421	33277444	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.319	0.5895	NA	NA	NA	1.0	0.0	4.0	1.0	2.9	0.0
E003	chr3	33277444	33277445	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.319	0.5895	NA	NA	NA	1.0	0.0	4.0	1.0	2.9	0.0
E004	chr3	33277445	33277450	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.0535	0.19	NA	NA	NA	3.0	2.1	4.0	1.0	2.9	1.9
E005	chr3	33277450	33277452	FALSE	LOW_COUNTS_INDEP_FILTER	3.0	0.048	0.0547	NA	NA	NA	4.9	2.1	5.0	1.0	2.9	1.9
E006	chr3	33277452	33277465	FALSE	LOW_COUNTS_INDEP_FILTER	9.4	0.0192	0.5522	NA	NA	NA	8.9	4.2	8.1	13.9	12.7	8.7
E007	chr3	33277465	33277471	TRUE	OK	10.9	0.0305	0.5174	0.8615	0.298	0.149	9.9	4.2	10.1	16.9	15.7	8.7
E008	chr3	33277471	33277475	TRUE	OK	15.8	0.011	0.162	0.7401	0.495	0.247	12.8	6.3	13.1	19.9	22.5	20.3
E009	chr3	33277475	33277476	TRUE	OK	15.8	0.011	0.162	0.7401	0.495	0.247	12.8	6.3	13.1	19.9	22.5	20.3
E010	chr3	33277476	33277515	TRUE	OK	47.0	0.0127	0.003415	0.2481	0.775	0.387	36.5	16.7	32.2	52.6	71.5	72.5
E011	chr3	33278172	33278393	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0975	0.1056	NA	NA	NA	0.0	0.0	1.0	2.0	2.9	1.9
E012	chr3	33289649	33289668	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E013	chr3	33289668	33289795	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E014	chr3	33297663	33297725	TRUE	OK	65.7	0.00612	0.004232	0.274	0.585	0.292	55.2	32.3	43.3	76.4	87.2	99.6
E015	chr3	33297725	33297803	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.425	0.8937	NA	NA	NA	0.0	0.0	1.0	0.0	0.0	1.9
E016	chr3	33297868	33297962	TRUE	OK	17.5	0.0106	0.1868	0.7516	0.454	0.227	14.8	11.5	10.1	17.9	28.4	22.2
E017	chr3	33300521	33300571	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E018	chr3	33303073	33303160	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.823	0.4599	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
E019	chr3	33317476	33317613	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.254	0.8114	NA	NA	NA	0.0	1.0	0.0	1.0	0.0	1.0
E020	chr3	33358966	33359021	TRUE	OK	75.4	0.00408	0.09729	0.6964	0.298	0.149	66.1	43.8	59.4	86.4	99.9	96.7
E021	chr3	33359282	33359357	TRUE	OK	93.4	0.00405	0.08298	0.6811	0.294	0.147	78.9	55.3	76.5	103.3	123.4	122.8
E022	chr3	33359357	33359358	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.057	0.2933	NA	NA	NA	2.0	0.0	2.0	3.0	2.9	4.8
E023	chr3	33364335	33364624	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.093	0.4521	NA	NA	NA	3.0	0.0	3.0	1.0	2.9	1.0
E024	chr3	33364624	33364719	TRUE	OK	115.1	0.00628	0.9539	0.9894	0.001	0.000	116.3	73.0	99.7	127.1	135.1	139.2
E025	chr3	33372340	33372675	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.0683	0.5839	NA	NA	NA	3.9	0.0	3.0	2.0	2.0	2.9
E026	chr3	33372987	33373020	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.564	0.7594	NA	NA	NA	1.0	0.0	0.0	0.0	2.9	0.0
E027	chr3	33373020	33373091	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.337	0.7937	NA	NA	NA	1.0	0.0	3.0	2.0	5.9	0.0
E028	chr3	33373091	33373160	TRUE	OK	108.9	0.00924	0.9498	0.9883	-0.026	-0.013	110.4	67.8	97.7	125.1	133.2	118.9
E029	chr3	33373240	33373259	FALSE	LOW_COUNTS_INDEP_FILTER	5.0	0.0839	0.3101	NA	NA	NA	6.9	3.1	6.0	7.9	1.0	4.8
E030	chr3	33373259	33373275	TRUE	OK	79.3	0.016	0.5123	0.86	-0.195	-0.098	94.7	49.0	69.5	91.3	82.3	88.9
E031	chr3	33373275	33373295	TRUE	OK	85.3	0.0193	0.6994	0.9197	-0.140	-0.070	98.6	46.9	79.6	92.3	98.9	95.7
E032	chr3	33373295	33373302	TRUE	OK	84.3	0.0223	0.9272	0.9828	-0.069	-0.034	96.6	43.8	76.5	94.3	99.9	94.7
E033	chr3	33373302	33373303	TRUE	OK	78.5	0.0299	0.9712	0.9931	-0.050	-0.025	94.7	37.5	68.5	87.4	93.0	89.9
E034	chr3	33373303	33373311	TRUE	OK	80.0	0.0285	0.9161	0.9803	-0.026	-0.013	95.6	38.6	68.5	89.4	94.0	93.8
E035	chr3	33373311	33373319	TRUE	OK	79.6	0.0276	0.9158	0.9802	-0.023	-0.012	94.7	38.6	68.5	88.4	94.0	93.8
E036	chr3	33373319	33373355	TRUE	OK	78.7	0.0264	0.8423	0.9612	-0.114	-0.057	96.6	40.7	68.5	86.4	86.2	93.8
E037	chr3	33373355	33373577	FALSE	LOW_COUNTS_INDEP_FILTER	4.5	0.0412	0.5155	NA	NA	NA	3.9	3.1	6.0	3.0	7.8	2.9
E038	chr3	33373577	33373601	TRUE	OK	73.9	0.0209	0.8962	0.9752	-0.003	-0.002	85.8	39.6	60.4	90.3	84.2	83.1
E039	chr3	33373601	33373618	TRUE	OK	68.5	0.0163	0.8076	0.952	-0.093	-0.047	79.9	39.6	58.4	81.4	77.4	74.4
E040	chr3	33373618	33373639	TRUE	OK	68.8	0.021	0.9405	0.9859	-0.016	-0.008	79.9	37.5	56.4	86.4	78.3	74.4
E041	chr3	33373639	33373704	TRUE	OK	85.3	0.0139	0.5049	0.8573	0.133	0.066	92.7	46.9	64.5	99.3	104.8	103.5
E042	chr3	33373846	33373850	TRUE	OK	61.2	0.0089	0.2845	0.7864	0.227	0.114	62.1	34.4	44.3	75.5	70.5	80.2
E043	chr3	33373850	33373870	TRUE	OK	74.1	0.00441	0.2831	0.786	0.192	0.096	71.0	46.9	55.4	89.4	90.1	91.8
E044	chr3	33373870	33373921	TRUE	OK	74.2	0.00478	0.3534	0.8084	0.168	0.084	73.0	44.8	57.4	82.4	94.0	93.8
E045	chr3	33373921	33373924	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.858	0.7581	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
E046	chr3	33375287	33375366	TRUE	OK	75.0	0.0039	0.6125	0.892	0.086	0.043	74.0	51.1	57.4	84.4	93.0	89.9
E047	chr3	33375366	33375407	TRUE	OK	73.6	0.00476	0.3971	0.8229	0.158	0.079	69.0	53.2	52.4	76.4	103.8	87.0
E048	chr3	33375407	33375418	TRUE	OK	61.7	0.00507	0.1302	0.7235	0.300	0.150	53.2	39.6	45.3	74.5	88.1	69.6
E049	chr3	33377272	33377333	TRUE	OK	74.0	0.00429	0.006731	0.3343	0.501	0.250	59.2	41.7	52.4	89.4	108.7	92.8
E050	chr3	33378102	33378147	TRUE	OK	84.0	0.00311	0.08678	0.6855	0.288	0.144	68.0	61.5	60.4	93.3	114.6	106.4
E051	chr3	33378684	33378741	TRUE	OK	83.4	0.00312	0.08032	0.6774	0.295	0.148	65.1	60.5	62.4	95.3	113.6	103.5
E052	chr3	33378741	33378834	FALSE	LOW_COUNTS_INDEP_FILTER	5.3	0.0279	0.08879	NA	NA	NA	3.0	4.2	1.0	6.0	8.8	8.7
E053	chr3	33382551	33383988	TRUE	OK	28.0	0.0101	0.4317	0.8336	0.221	0.110	27.6	13.6	23.2	28.8	33.3	41.6
E054	chr3	33383988	33384201	TRUE	OK	106.7	0.00335	0.2221	0.7656	0.195	0.097	83.8	75.1	91.7	117.1	132.2	140.2
E055	chr3	33385500	33385621	TRUE	OK	76.3	0.00349	0.3232	0.7988	0.176	0.088	61.1	58.4	60.4	79.4	96.9	101.5
E056	chr3	33385621	33385728	TRUE	OK	70.8	0.00746	0.9162	0.9803	-0.016	-0.008	52.3	68.8	58.4	69.5	83.2	92.8
E057	chr3	33385728	33385862	TRUE	OK	77.9	0.00334	0.1822	0.7499	0.232	0.116	61.1	55.3	63.5	86.4	97.9	103.5
E058	chr3	33385862	33385948	TRUE	OK	69.8	0.00397	0.06893	0.6612	0.335	0.168	56.2	41.7	56.4	80.4	89.1	94.7
E059	chr3	33385948	33386023	TRUE	OK	71.4	0.00377	0.7651	0.9397	0.057	0.028	58.2	60.5	57.4	71.5	91.1	89.9
E060	chr3	33386023	33386476	TRUE	OK	173.0	0.016	0.1075	0.7053	-0.383	-0.191	152.8	195.0	139.0	177.7	176.3	197.2
E061	chr3	33386476	33386625	TRUE	OK	47.4	0.00909	0.003412	0.248	-0.697	-0.348	44.4	61.5	45.3	41.7	46.0	45.4
E062	chr3	33386625	33386633	TRUE	OK	9.9	0.0381	0.2793	0.7847	-0.524	-0.262	12.8	11.5	6.0	6.0	15.7	7.7
E063	chr3	33386633	33387265	TRUE	OK	28.1	0.0273	0.09815	0.6967	-0.592	-0.296	31.6	36.5	19.1	24.8	36.2	20.3
E064	chr3	33387265	33388092	TRUE	OK	23.8	0.00949	0.009557	0.3862	-0.765	-0.383	28.6	30.2	19.1	19.9	19.6	25.1
E065	chr3	33403233	33403662	TRUE	OK	15.0	0.0121	0.3012	0.7918	0.374	0.187	13.8	9.4	9.1	20.8	15.7	21.3
J066	chr3	33277096	33297663	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J067	chr3	33277515	33297663	TRUE	OK	46.2	0.0103	0.003562	0.2529	0.735	0.367	36.5	16.7	32.2	52.6	67.6	71.5
J068	chr3	33278393	33297663	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.556	0.726	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J069	chr3	33289795	33297663	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J070	chr3	33297725	33297868	TRUE	OK	12.6	0.0116	0.006583	0.3318	1.111	0.556	9.9	4.2	5.0	12.9	22.5	21.3
J071	chr3	33297725	33358966	TRUE	OK	51.6	0.00386	0.03039	0.5532	0.439	0.220	43.4	28.2	37.3	63.5	62.7	74.4
J072	chr3	33297725	33359282	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J073	chr3	33297725	33364624	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.565	0.7312	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J074	chr3	33297725	33373091	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.162	0.7703	NA	NA	NA	2.0	0.0	0.0	0.0	1.0	1.0
J075	chr3	33297803	33358966	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.613	0.4944	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.9
J076	chr3	33297962	33300521	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J077	chr3	33297962	33303073	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.539	0.4197	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
J078	chr3	33297962	33317476	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.264	0.8016	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	1.0
J079	chr3	33297962	33358966	FALSE	LOW_COUNTS_INDEP_FILTER	8.4	0.0135	0.7919	NA	NA	NA	8.9	8.3	5.0	7.9	12.7	7.7
J080	chr3	33297962	33373091	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.109	0.4009	NA	NA	NA	1.0	0.0	1.0	3.0	0.0	2.9
J081	chr3	33300571	33358966	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J082	chr3	33303160	33364624	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J083	chr3	33317613	33358966	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J084	chr3	33359021	33359282	TRUE	OK	70.6	0.0029	0.1249	0.72	0.269	0.134	61.1	42.8	56.4	77.4	91.1	94.7
J085	chr3	33359357	33364624	TRUE	OK	61.4	0.00322	0.3346	0.8024	0.178	0.089	49.3	39.6	55.4	70.5	79.3	74.4
J086	chr3	33364719	33373091	TRUE	OK	84.7	0.00435	0.8096	0.9525	-0.050	-0.025	88.7	55.3	72.5	94.3	101.8	95.7
J087	chr3	33372675	33373091	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.404	0.5089	NA	NA	NA	0.0	0.0	2.0	1.0	0.0	0.0
J088	chr3	33373160	33373240	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.123	0.6891	NA	NA	NA	3.9	1.0	3.0	5.0	0.0	3.9
J089	chr3	33373160	33373259	TRUE	OK	70.4	0.00488	0.6208	0.8948	-0.102	-0.051	75.9	45.9	61.4	79.4	80.3	79.3
J090	chr3	33373302	33373870	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J091	chr3	33373355	33373577	TRUE	OK	64.4	0.0208	0.8191	0.955	-0.103	-0.051	77.9	36.5	53.4	77.4	66.6	74.4
J092	chr3	33373704	33373846	TRUE	OK	59.2	0.00434	0.1589	0.7384	0.272	0.136	56.2	34.4	43.3	74.5	69.5	77.3
J093	chr3	33373704	33373850	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.104	0.6957	NA	NA	NA	2.0	1.0	0.0	1.0	2.0	0.0
J094	chr3	33373921	33375287	TRUE	OK	55.8	0.00295	0.8245	0.9564	0.040	0.020	54.2	38.6	45.3	59.6	67.6	69.6
J095	chr3	33375418	33377272	TRUE	OK	51.3	0.00515	0.0714	0.665	0.381	0.190	43.4	32.3	35.3	67.5	73.4	56.1
J096	chr3	33377333	33378102	TRUE	OK	63.3	0.00352	0.01542	0.4517	0.456	0.228	54.2	39.6	39.3	70.5	94.0	82.2
J097	chr3	33378147	33378684	TRUE	OK	69.2	0.00241	0.1092	0.7072	0.278	0.139	53.2	50.1	53.4	76.4	91.1	90.9
J098	chr3	33378741	33383988	TRUE	OK	57.0	0.00321	0.379	0.8165	0.169	0.085	42.4	41.7	50.4	60.6	75.4	71.5
J099	chr3	33378834	33383988	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.118	0.2738	NA	NA	NA	3.0	1.0	0.0	1.0	0.0	1.0
J100	chr3	33384201	33385500	TRUE	OK	46.3	0.0047	0.1478	0.7339	0.315	0.157	39.4	28.2	35.3	46.7	58.8	69.6
J101	chr3	33385728	33403233	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.256	0.6908	NA	NA	NA	0.0	3.1	1.0	1.0	2.9	0.0
N102	chr3	33390368	33392562	TRUE	OK	329.9	0.04	2.224e-05	0.01035	-1.486	-0.742	421.0	298.2	375.7	325.6	232.1	326.8
N103	chr3	33392614	33393311	TRUE	OK	339.4	0.0577	0.0003278	0.06822	-1.498	-0.748	444.7	290.9	385.8	342.5	233.1	339.4
N104	chr3	33393454	33396161	TRUE	OK	550.7	1.38	0.06802	0.6596	-2.289	-1.134	694.2	402.5	579.2	578.8	483.8	565.6
N105	chr3	33396280	33396744	TRUE	OK	18.2	0.00685	0.7727	0.9421	-0.095	-0.048	19.7	11.5	16.1	21.8	19.6	20.3
N106	chr3	33396280	33397044	TRUE	OK	564.4	1.92	0.02014	0.4931	-2.837	-1.402	711.9	440.0	616.4	600.6	467.1	550.1
N107	chr3	33396878	33397044	TRUE	OK	17.6	0.0573	0.9772	0.9945	-0.046	-0.023	23.7	6.3	15.1	26.8	17.6	16.4
N108	chr3	33397135	33400188	TRUE	OK	513.7	0.517	0.0999	0.6979	-1.474	-0.733	633.0	336.8	528.8	521.2	514.1	548.2
N109	chr3	33400282	33400961	TRUE	OK	553.9	2.22	0.04342	0.6053	-1.346	-0.668	684.3	302.4	592.2	587.7	554.3	602.3
N110	chr3	33401016	33402800	TRUE	OK	531.3	1.54	0.1586	0.7383	-1.522	-0.756	653.7	317.0	569.1	569.9	527.8	550.1
N111	chr3	33402904	33408689	TRUE	OK	286.3	0.033	0.001898	0.1851	-1.004	-0.501	339.2	222.1	334.4	288.9	282.0	251.4
N112	chr3	33402904	33409235	TRUE	OK	419.4	0.125	0.001514	0.1652	-1.822	-0.908	539.3	315.9	506.6	384.2	372.1	398.3

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000153558.15
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE