Normalized Counts Table (ENSG00000144749.13)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr3	66378796	66378797	TRUE	OK	22.0	0.0273	0.009748	0.3887	-0.957	-0.479	22.7	32.3	24.2	18.9	11.8	22.2
E002	chr3	66378797	66380224	TRUE	OK	436.2	0.0261	0.2915	0.7891	-0.270	-0.135	402.3	450.5	373.7	473.6	425.0	492.1
E003	chr3	66380224	66380489	TRUE	OK	142.1	0.00666	0.04664	0.6156	0.338	0.169	135.1	92.8	101.7	171.8	160.6	190.5
E004	chr3	66380576	66380861	TRUE	OK	145.3	0.00985	0.9905	0.9977	-0.023	-0.012	162.7	87.6	134.0	156.9	155.7	175.0
E005	chr3	66381478	66381631	TRUE	OK	99.0	0.00434	0.6359	0.8998	0.071	0.035	92.7	64.6	95.7	107.2	123.4	110.2
E006	chr3	66382272	66382398	TRUE	OK	98.5	0.00631	0.828	0.9572	-0.058	-0.029	108.5	57.3	97.7	115.2	111.6	100.6
E007	chr3	66382981	66383401	TRUE	OK	168.3	0.00528	0.01039	0.3971	0.384	0.192	152.8	86.5	145.0	218.4	199.8	206.9
E008	chr3	66383990	66384131	TRUE	OK	98.5	0.0144	0.03404	0.5701	0.491	0.245	64.1	53.2	96.7	142.0	103.8	131.5
E009	chr3	66384131	66384272	TRUE	OK	99.8	0.00684	0.4054	0.8255	0.148	0.074	90.7	58.4	98.7	141.0	102.8	107.3
E010	chr3	66385980	66386301	TRUE	OK	144.1	0.00272	0.4133	0.8282	0.108	0.054	140.0	95.9	127.9	188.6	160.6	151.8
E011	chr3	66394039	66394203	TRUE	OK	98.6	0.00292	0.5637	0.8761	0.083	0.042	93.7	65.7	91.7	116.2	108.7	116.0
E012	chr3	66398111	66398183	TRUE	OK	79.6	0.00352	0.4966	0.8546	-0.119	-0.059	74.9	60.5	82.6	84.4	90.1	85.1
E013	chr3	66398969	66399041	TRUE	OK	55.4	0.00381	0.9011	0.9764	0.019	0.010	52.3	38.6	53.4	64.5	63.7	59.9
E014	chr3	66401608	66401680	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.191	0.7974	NA	NA	NA	0.0	1.0	1.0	0.0	1.0	1.0
E015	chr3	66404234	66404410	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.127	0.2907	NA	NA	NA	1.0	2.1	1.0	1.0	1.0	0.0
E016	chr3	66405197	66405278	TRUE	OK	58.4	0.00911	0.2003	0.7581	0.270	0.135	61.1	29.2	47.3	71.5	63.7	77.3
E017	chr3	66405752	66406213	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.101	0.07172	NA	NA	NA	1.0	0.0	1.0	4.0	5.9	1.0
E018	chr3	66407347	66407491	TRUE	OK	81.4	0.0153	0.1467	0.7333	0.319	0.159	74.0	34.4	80.6	98.3	99.9	101.5
E019	chr3	66409753	66410128	FALSE	LOW_COUNTS_INDEP_FILTER	3.5	0.0565	0.9886	NA	NA	NA	2.0	3.1	4.0	3.0	6.9	1.9
E020	chr3	66410128	66410150	TRUE	OK	55.2	0.0192	0.04426	0.6078	0.535	0.267	42.4	19.8	54.4	74.5	63.7	76.4
E021	chr3	66410150	66410272	TRUE	OK	86.4	0.0107	0.008545	0.3696	0.553	0.276	66.1	36.5	79.6	119.1	101.8	115.1
E022	chr3	66412870	66412925	TRUE	OK	78.4	0.0122	0.0101	0.3933	0.570	0.285	60.1	31.3	72.5	105.2	96.0	105.4
E023	chr3	66412925	66412931	TRUE	OK	56.3	0.00487	3.437e-05	0.01417	0.843	0.421	43.4	21.9	38.3	81.4	81.3	71.5
E024	chr3	66412931	66413014	TRUE	OK	70.3	0.00416	3.408e-05	0.01407	0.762	0.381	57.2	30.2	47.3	105.2	91.1	90.9
E025	chr3	66414919	66414957	TRUE	OK	59.3	0.00432	0.01029	0.3957	0.491	0.245	51.3	29.2	47.3	76.4	75.4	76.4
E026	chr3	66414957	66415063	TRUE	OK	71.8	0.0043	0.04725	0.6177	0.352	0.176	66.1	36.5	61.4	95.3	82.3	88.9
E027	chr3	66417128	66417266	TRUE	OK	77.7	0.0184	0.3273	0.8001	0.214	0.107	83.8	33.4	70.5	99.3	82.3	96.7
E028	chr3	66417582	66417632	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E029	chr3	66451557	66451558	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.242	0.7648	NA	NA	NA	1.0	1.0	0.0	2.0	0.0	0.0
E030	chr3	66451558	66451633	TRUE	OK	49.7	0.013	0.6939	0.918	0.074	0.037	58.2	24.0	44.3	66.5	54.8	50.3
E031	chr3	66462437	66462509	TRUE	OK	53.0	0.0248	0.4561	0.8415	0.219	0.110	61.1	29.2	37.3	76.4	70.5	43.5
E032	chr3	66468984	66469245	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E033	chr3	66498146	66498259	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E034	chr3	66500189	66500932	TRUE	OK	123.2	0.0594	0.2157	0.7633	-0.458	-0.229	154.8	82.4	139.0	169.8	136.1	57.0
E035	chr3	66500932	66501011	TRUE	OK	31.4	0.108	0.08535	0.6839	-0.830	-0.415	42.4	25.0	41.3	47.7	25.5	6.8
E036	chr3	66501092	66501263	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.85	0.7227	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J037	chr3	66380489	66380576	TRUE	OK	70.1	0.0139	0.182	0.7498	0.310	0.155	74.9	42.8	45.3	80.4	79.3	97.7
J038	chr3	66380861	66381478	TRUE	OK	51.4	0.00718	0.3465	0.8061	-0.220	-0.110	52.3	33.4	60.4	47.7	56.8	58.0
J039	chr3	66381631	66382272	TRUE	OK	52.1	0.0036	0.182	0.7498	0.254	0.127	51.3	28.2	44.3	62.5	66.6	59.9
J040	chr3	66382398	66382981	TRUE	OK	58.5	0.0037	0.8444	0.9617	-0.047	-0.024	61.1	33.4	61.4	67.5	65.6	61.9
J041	chr3	66383401	66383990	TRUE	OK	51.8	0.00492	0.0004385	0.08218	0.739	0.370	32.5	28.2	39.3	73.5	58.8	78.3
J042	chr3	66383401	66384131	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.18	0.06112	NA	NA	NA	0.0	0.0	0.0	2.0	2.9	0.0
J043	chr3	66384272	66385980	TRUE	OK	53.2	0.00668	0.9911	0.9978	-0.008	-0.004	63.1	33.4	43.3	69.5	57.8	52.2
J044	chr3	66386301	66394039	TRUE	OK	53.9	0.00288	0.04121	0.598	0.388	0.194	41.4	38.6	41.3	75.5	62.7	63.8
J045	chr3	66394203	66398111	TRUE	OK	63.5	0.00334	0.4453	0.8379	-0.142	-0.071	64.1	48.0	63.5	61.6	72.5	71.5
J046	chr3	66398183	66398969	TRUE	OK	41.4	0.00391	0.5462	0.8707	-0.133	-0.067	37.5	30.2	46.3	46.7	40.2	47.4
J047	chr3	66399041	66401608	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J048	chr3	66399041	66404234	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J049	chr3	66399041	66405197	TRUE	OK	35.0	0.00378	0.3008	0.7917	0.236	0.118	30.6	25.0	28.2	46.7	37.2	42.5
J050	chr3	66401680	66405197	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J051	chr3	66405278	66405752	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.558	0.4556	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
J052	chr3	66405278	66407347	TRUE	OK	39.4	0.0203	0.3385	0.8036	0.254	0.127	42.4	15.6	35.3	40.7	50.9	51.2
J053	chr3	66407491	66410128	TRUE	OK	50.4	0.0187	0.02943	0.5497	0.596	0.298	39.4	17.7	46.3	66.5	56.8	75.4
J054	chr3	66410272	66412870	TRUE	OK	60.5	0.0205	0.02271	0.5106	0.611	0.305	41.4	21.9	60.4	80.4	76.4	82.2
J055	chr3	66413014	66414919	TRUE	OK	47.3	0.00369	0.002113	0.1962	0.631	0.315	38.5	20.9	36.3	64.5	57.8	65.7
J056	chr3	66415063	66417128	TRUE	OK	46.8	0.00402	0.08111	0.6783	0.354	0.177	43.4	21.9	41.3	65.5	52.9	56.1
J057	chr3	66417266	66417582	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J058	chr3	66417266	66451558	TRUE	OK	36.1	0.0321	0.8792	0.9708	-0.016	-0.008	47.3	13.6	34.2	46.7	34.3	40.6
J059	chr3	66451633	66462437	TRUE	OK	39.5	0.0051	0.5555	0.8734	0.123	0.061	44.4	20.9	33.2	50.6	47.0	40.6
J060	chr3	66462509	66468984	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J061	chr3	66462509	66498146	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J062	chr3	66462509	66500189	TRUE	OK	35.8	0.0376	0.3071	0.7936	0.385	0.193	40.4	20.9	19.1	53.6	52.9	28.0
J063	chr3	66462509	66501092	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.556	0.6929	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000144749.13
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE