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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr7 | 107168960 | 107168989 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.4 | 0.1 | 0.4953 | NA | NA | NA | 3.0 | 3.1 | 3.0 | 3.0 | 2.9 | 11.6 |
E002 | chr7 | 107168989 | 107168999 | TRUE | OK | 19.8 | 0.0317 | 0.4818 | 0.8499 | 0.299 | 0.150 | 12.8 | 4.2 | 11.1 | 26.8 | 22.5 | 41.6 |
E003 | chr7 | 107168999 | 107169002 | TRUE | OK | 23.4 | 0.0504 | 0.7165 | 0.9249 | 0.141 | 0.070 | 19.7 | 5.2 | 11.1 | 31.8 | 24.5 | 48.3 |
E004 | chr7 | 107169002 | 107169027 | TRUE | OK | 151.6 | 0.0102 | 0.7838 | 0.9454 | 0.051 | 0.026 | 93.7 | 61.5 | 89.6 | 240.3 | 181.2 | 243.6 |
E005 | chr7 | 107169027 | 107169185 | TRUE | OK | 196.3 | 0.0135 | 0.1616 | 0.7399 | 0.299 | 0.149 | 93.7 | 69.9 | 116.8 | 332.6 | 243.8 | 321.0 |
E006 | chr7 | 107169719 | 107169766 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.32 | 0.4581 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 |
E007 | chr7 | 107169766 | 107169768 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.752 | 0.9 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
E008 | chr7 | 107169768 | 107169772 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.752 | 0.9 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
E009 | chr7 | 107169772 | 107170130 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.9 | 0.0194 | 0.7794 | NA | NA | NA | 4.9 | 2.1 | 7.1 | 11.9 | 9.8 | 11.6 |
E010 | chr7 | 107173456 | 107173591 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.0626 | 0.2225 | NA | NA | NA | 2.0 | 1.0 | 7.1 | 4.0 | 3.9 | 5.8 |
E011 | chr7 | 107174447 | 107174527 | TRUE | OK | 17.2 | 0.0364 | 0.05004 | 0.6257 | -0.817 | -0.408 | 11.8 | 13.6 | 16.1 | 31.8 | 14.7 | 15.5 |
E012 | chr7 | 107174527 | 107174745 | TRUE | OK | 31.4 | 0.011 | 0.03638 | 0.5804 | -0.594 | -0.297 | 28.6 | 18.8 | 21.2 | 49.6 | 37.2 | 32.9 |
E013 | chr7 | 107179625 | 107179816 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0634 | 0.104 | NA | NA | NA | 1.0 | 3.1 | 3.0 | 3.0 | 2.9 | 1.0 |
E014 | chr7 | 107179816 | 107179877 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.3 | 0.112 | 0.1331 | NA | NA | NA | 5.9 | 3.1 | 5.0 | 10.9 | 5.9 | 1.0 |
E015 | chr7 | 107179877 | 107179878 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.6 | 0.0755 | 0.3718 | NA | NA | NA | 5.9 | 4.2 | 10.1 | 20.8 | 10.8 | 5.8 |
E016 | chr7 | 107179878 | 107179917 | TRUE | OK | 387.4 | 0.014 | 0.2115 | 0.7621 | 0.233 | 0.117 | 226.8 | 126.2 | 221.6 | 630.4 | 516.1 | 603.3 |
E017 | chr7 | 107179917 | 107179978 | TRUE | OK | 461.0 | 0.00891 | 0.1231 | 0.7188 | 0.244 | 0.122 | 270.2 | 161.6 | 249.8 | 734.7 | 634.6 | 715.5 |
E018 | chr7 | 107179978 | 107180062 | TRUE | OK | 545.6 | 0.00978 | 0.04043 | 0.5952 | 0.333 | 0.167 | 313.6 | 176.2 | 285.0 | 842.9 | 802.0 | 853.7 |
E019 | chr7 | 107182372 | 107182415 | TRUE | OK | 472.9 | 0.00539 | 0.003699 | 0.2571 | 0.393 | 0.196 | 255.4 | 162.7 | 232.7 | 738.6 | 682.6 | 765.7 |
E020 | chr7 | 107182415 | 107182528 | TRUE | OK | 573.9 | 0.0018 | 0.0003568 | 0.07197 | 0.329 | 0.165 | 287.9 | 228.4 | 301.2 | 890.5 | 851.0 | 884.7 |
E021 | chr7 | 107182528 | 107182536 | TRUE | OK | 374.8 | 0.00132 | 0.06049 | 0.6489 | 0.175 | 0.088 | 196.2 | 168.9 | 206.5 | 557.0 | 560.1 | 559.8 |
E022 | chr7 | 107182536 | 107182576 | TRUE | OK | 462.2 | 0.00161 | 0.05058 | 0.6269 | 0.178 | 0.089 | 258.3 | 186.6 | 259.9 | 680.1 | 696.3 | 692.3 |
E023 | chr7 | 107182576 | 107182601 | TRUE | OK | 403.3 | 0.00146 | 0.1201 | 0.716 | 0.144 | 0.072 | 219.9 | 173.1 | 231.7 | 578.8 | 622.8 | 593.6 |
E024 | chr7 | 107185800 | 107185942 | TRUE | OK | 607.8 | 0.00202 | 0.05418 | 0.6354 | 0.179 | 0.089 | 324.4 | 255.5 | 349.5 | 893.5 | 954.8 | 869.2 |
E025 | chr7 | 107186360 | 107186463 | TRUE | OK | 548.9 | 0.00194 | 0.3305 | 0.8011 | 0.091 | 0.045 | 318.5 | 247.1 | 307.2 | 771.4 | 873.5 | 775.4 |
E026 | chr7 | 107186463 | 107186472 | TRUE | OK | 361.5 | 0.00136 | 0.5396 | 0.8688 | 0.056 | 0.028 | 209.0 | 164.7 | 209.5 | 507.3 | 544.5 | 533.7 |
E027 | chr7 | 107186568 | 107186681 | TRUE | OK | 514.7 | 0.00113 | 0.1726 | 0.7452 | 0.114 | 0.057 | 281.0 | 243.0 | 286.1 | 734.7 | 789.3 | 754.1 |
E028 | chr7 | 107189291 | 107189448 | TRUE | OK | 614.0 | 0.00524 | 0.07681 | 0.6736 | 0.222 | 0.111 | 369.8 | 230.4 | 320.3 | 891.5 | 918.6 | 953.3 |
E029 | chr7 | 107189875 | 107190172 | TRUE | OK | 18.8 | 0.0199 | 0.0693 | 0.6615 | -0.659 | -0.329 | 15.8 | 12.5 | 14.1 | 24.8 | 31.3 | 14.5 |
E030 | chr7 | 107190172 | 107190317 | TRUE | OK | 639.9 | 0.00567 | 0.3031 | 0.7924 | 0.127 | 0.063 | 399.3 | 251.3 | 351.5 | 882.6 | 966.5 | 988.1 |
E031 | chr7 | 107195833 | 107195847 | TRUE | OK | 383.5 | 0.00221 | 0.5068 | 0.8581 | 0.065 | 0.033 | 229.7 | 163.7 | 222.6 | 522.2 | 583.7 | 579.1 |
E032 | chr7 | 107195847 | 107195973 | TRUE | OK | 572.4 | 0.00281 | 0.1094 | 0.7074 | 0.165 | 0.082 | 321.4 | 233.6 | 325.3 | 797.2 | 858.8 | 898.2 |
E033 | chr7 | 107195973 | 107195981 | TRUE | OK | 382.9 | 0.00176 | 0.06737 | 0.6586 | 0.181 | 0.090 | 206.1 | 166.8 | 209.5 | 564.9 | 554.3 | 595.6 |
E034 | chr7 | 107195981 | 107196151 | TRUE | OK | 696.7 | 0.00146 | 0.001437 | 0.1612 | 0.267 | 0.133 | 363.8 | 295.1 | 366.6 | 1050.4 | 1024.3 | 1080.0 |
E035 | chr7 | 107196151 | 107196289 | TRUE | OK | 23.0 | 0.0299 | 0.1788 | 0.7483 | -0.519 | -0.260 | 9.9 | 21.9 | 17.1 | 27.8 | 24.5 | 36.7 |
E036 | chr7 | 107196289 | 107196369 | TRUE | OK | 23.2 | 0.0494 | 0.4101 | 0.8272 | -0.413 | -0.206 | 7.9 | 25.0 | 14.1 | 31.8 | 28.4 | 31.9 |
E037 | chr7 | 107196369 | 107197122 | TRUE | OK | 59.7 | 0.00388 | 0.04361 | 0.6059 | -0.392 | -0.196 | 38.5 | 40.7 | 40.3 | 76.4 | 85.2 | 77.3 |
E038 | chr7 | 107200159 | 107200300 | TRUE | OK | 787.6 | 0.00273 | 0.1357 | 0.727 | 0.149 | 0.074 | 426.0 | 350.4 | 448.2 | 1213.2 | 1105.6 | 1182.4 |
E039 | chr7 | 107200300 | 107200301 | TRUE | OK | 542.7 | 0.00286 | 0.5385 | 0.8683 | 0.063 | 0.032 | 315.5 | 247.1 | 311.2 | 828.0 | 741.3 | 813.1 |
E040 | chr7 | 107200301 | 107200331 | TRUE | OK | 72.0 | 0.00732 | 0.4512 | 0.8398 | 0.161 | 0.080 | 37.5 | 28.2 | 44.3 | 87.4 | 114.6 | 119.9 |
E041 | chr7 | 107200331 | 107201404 | TRUE | OK | 237.5 | 0.00565 | 0.7517 | 0.9357 | 0.040 | 0.020 | 144.0 | 94.9 | 147.1 | 314.7 | 340.8 | 383.8 |
E042 | chr7 | 107201413 | 107201454 | TRUE | OK | 579.2 | 0.00258 | 0.4533 | 0.8404 | 0.076 | 0.038 | 328.3 | 269.0 | 330.4 | 891.5 | 800.1 | 855.7 |
E043 | chr7 | 107201454 | 107201635 | TRUE | OK | 720.6 | 0.00149 | 0.1602 | 0.739 | -0.119 | -0.059 | 443.7 | 362.9 | 449.2 | 1042.4 | 994.9 | 1030.6 |
E044 | chr7 | 107201635 | 107202508 | TRUE | OK | 1635.7 | 0.00742 | 0.02566 | 0.5292 | -0.321 | -0.160 | 1038.3 | 1010.4 | 960.9 | 2181.2 | 2379.6 | 2244.0 |
E045 | chr7 | 107202508 | 107202522 | TRUE | OK | 49.2 | 0.0124 | 3.49e-05 | 0.01438 | -1.044 | -0.522 | 50.3 | 43.8 | 35.3 | 67.5 | 51.9 | 46.4 |
J046 | chr7 | 107169027 | 107174447 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.243 | 0.7739 | NA | NA | NA | 1.0 | 3.1 | 1.0 | 6.9 | 0.0 | 4.8 |
J047 | chr7 | 107169027 | 107179816 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.13 | 0.1757 | NA | NA | NA | 2.0 | 2.1 | 1.0 | 4.0 | 1.0 | 0.0 |
J048 | chr7 | 107169027 | 107179878 | TRUE | OK | 107.2 | 0.00731 | 0.6818 | 0.9142 | 0.072 | 0.036 | 68.0 | 40.7 | 62.4 | 158.8 | 136.1 | 176.9 |
J049 | chr7 | 107169185 | 107179878 | TRUE | OK | 167.2 | 0.0117 | 0.02202 | 0.5066 | 0.483 | 0.242 | 78.9 | 53.2 | 84.6 | 287.9 | 212.5 | 286.2 |
J050 | chr7 | 107170130 | 107173456 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.264 | 0.5055 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
J051 | chr7 | 107170130 | 107174447 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.267 | 0.5056 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
J052 | chr7 | 107170130 | 107179816 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J053 | chr7 | 107170130 | 107179878 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.047 | 0.1776 | NA | NA | NA | 3.0 | 1.0 | 2.0 | 4.0 | 1.0 | 1.9 |
J054 | chr7 | 107173591 | 107174447 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.0765 | 0.8713 | NA | NA | NA | 0.0 | 0.0 | 3.0 | 2.0 | 2.0 | 2.9 |
J055 | chr7 | 107174745 | 107179878 | TRUE | OK | 14.8 | 0.0173 | 0.2888 | 0.7881 | -0.434 | -0.217 | 15.8 | 5.2 | 9.1 | 23.8 | 19.6 | 15.5 |
J056 | chr7 | 107180062 | 107182372 | TRUE | OK | 418.3 | 0.00523 | 0.00258 | 0.2177 | 0.411 | 0.205 | 225.8 | 142.9 | 200.4 | 650.3 | 601.3 | 689.4 |
J057 | chr7 | 107182601 | 107185800 | TRUE | OK | 378.9 | 0.00135 | 0.02123 | 0.5012 | 0.214 | 0.107 | 200.2 | 150.2 | 216.6 | 553.0 | 596.4 | 556.9 |
J058 | chr7 | 107185942 | 107186360 | TRUE | OK | 342.3 | 0.00172 | 0.1217 | 0.7173 | 0.155 | 0.078 | 191.3 | 142.9 | 192.4 | 487.5 | 552.3 | 487.3 |
J059 | chr7 | 107186472 | 107186568 | TRUE | OK | 346.3 | 0.001 | 0.3602 | 0.8109 | 0.081 | 0.041 | 193.3 | 157.5 | 201.4 | 483.5 | 522.9 | 519.2 |
J060 | chr7 | 107186681 | 107189291 | TRUE | OK | 304.4 | 0.000954 | 0.03344 | 0.5673 | 0.199 | 0.100 | 169.6 | 128.3 | 160.1 | 449.7 | 460.3 | 458.3 |
J061 | chr7 | 107186681 | 107195833 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.129 | 0.746 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 1.9 |
J062 | chr7 | 107189448 | 107190172 | TRUE | OK | 357.3 | 0.0127 | 0.09303 | 0.6916 | 0.306 | 0.153 | 222.8 | 112.6 | 175.3 | 511.3 | 539.6 | 582.0 |
J063 | chr7 | 107190317 | 107195833 | TRUE | OK | 351.8 | 0.00199 | 0.5967 | 0.8869 | 0.051 | 0.026 | 213.0 | 151.2 | 204.5 | 471.6 | 547.4 | 523.1 |
J064 | chr7 | 107196151 | 107196289 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.0846 | 0.12 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 2.0 | 1.9 |
J065 | chr7 | 107196151 | 107200159 | TRUE | OK | 377.0 | 0.00142 | 0.001141 | 0.1421 | 0.312 | 0.156 | 190.3 | 156.4 | 191.4 | 591.7 | 551.3 | 581.1 |
J066 | chr7 | 107196369 | 107200159 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 1 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
J067 | chr7 | 107200301 | 107201413 | TRUE | OK | 485.1 | 0.00295 | 0.5658 | 0.8769 | 0.062 | 0.031 | 280.0 | 225.2 | 276.0 | 759.5 | 658.1 | 711.6 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000105856.14 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |