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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr3 | 3700813 | 3702461 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E002 | chr3 | 3777724 | 3777803 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E003 | chr3 | 3779240 | 3779322 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E004 | chr3 | 3781351 | 3782502 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.865 | 0.6225 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E005 | chr3 | 3782502 | 3782637 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E006 | chr3 | 3782637 | 3782701 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E007 | chr3 | 3788913 | 3789074 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.853 | 0.5764 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E008 | chr3 | 3795238 | 3795295 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E009 | chr3 | 3795295 | 3795428 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E010 | chr3 | 3797900 | 3798214 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.745 | 0.4138 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E011 | chr3 | 3799711 | 3799896 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.809 | 0.3892 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| E012 | chr3 | 3800700 | 3800875 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E013 | chr3 | 3822733 | 3822897 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.771 | 0.3831 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E014 | chr3 | 3827241 | 3827509 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.185 | 0.9676 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| E015 | chr3 | 4068568 | 4068745 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.4 | 0.0177 | 0.07308 | NA | NA | NA | 6.9 | 6.3 | 7.1 | 14.9 | 12.7 | 8.7 |
| E016 | chr3 | 4361145 | 4361765 | TRUE | OK | 807.2 | 0.00628 | 0.06289 | 0.6522 | -0.277 | -0.138 | 764.2 | 1044.8 | 743.3 | 813.1 | 712.9 | 764.8 |
| E017 | chr3 | 4361765 | 4361794 | TRUE | OK | 211.3 | 0.00172 | 0.2187 | 0.7644 | -0.134 | -0.067 | 214.0 | 246.1 | 194.4 | 214.4 | 187.0 | 211.7 |
| E018 | chr3 | 4361794 | 4362108 | TRUE | OK | 573.6 | 0.00231 | 0.5602 | 0.8748 | 0.058 | 0.029 | 549.2 | 628.8 | 499.6 | 580.8 | 536.6 | 646.8 |
| E019 | chr3 | 4362108 | 4362254 | TRUE | OK | 477.3 | 0.00354 | 0.8633 | 0.9668 | 0.025 | 0.013 | 458.5 | 512.0 | 437.1 | 469.6 | 433.8 | 553.0 |
| E020 | chr3 | 4376329 | 4376389 | TRUE | OK | 399.9 | 0.00132 | 0.5215 | 0.8628 | -0.055 | -0.027 | 400.3 | 429.6 | 376.7 | 405.1 | 375.1 | 412.8 |
| E021 | chr3 | 4410864 | 4410978 | TRUE | OK | 460.8 | 0.00247 | 0.7979 | 0.9492 | -0.023 | -0.012 | 457.5 | 484.9 | 435.1 | 442.8 | 445.6 | 498.9 |
| E022 | chr3 | 4417127 | 4417242 | TRUE | OK | 425.6 | 0.00909 | 0.3244 | 0.7993 | 0.170 | 0.085 | 452.6 | 373.3 | 375.7 | 435.8 | 439.7 | 476.7 |
| E023 | chr3 | 4418009 | 4418132 | TRUE | OK | 382.9 | 0.011 | 0.3523 | 0.8081 | 0.176 | 0.088 | 414.1 | 320.1 | 343.5 | 423.9 | 373.1 | 422.5 |
| E024 | chr3 | 4420063 | 4420146 | TRUE | OK | 360.3 | 0.00601 | 0.1799 | 0.7489 | 0.201 | 0.101 | 371.7 | 332.6 | 301.2 | 422.9 | 335.9 | 397.4 |
| E025 | chr3 | 4449265 | 4449340 | TRUE | OK | 341.0 | 0.00541 | 0.5668 | 0.8771 | 0.088 | 0.044 | 355.9 | 326.4 | 303.2 | 396.1 | 309.5 | 354.8 |
| E026 | chr3 | 4452875 | 4453049 | TRUE | OK | 525.5 | 0.00442 | 0.1714 | 0.7446 | 0.178 | 0.089 | 517.7 | 484.9 | 481.5 | 582.8 | 507.3 | 579.1 |
| E027 | chr3 | 4466975 | 4467261 | TRUE | OK | 404.4 | 0.00509 | 0.1653 | 0.742 | 0.193 | 0.096 | 381.6 | 365.0 | 386.8 | 447.7 | 420.1 | 425.4 |
| E028 | chr3 | 4467261 | 4467264 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.6 | 0.0524 | 0.1799 | NA | NA | NA | 1.0 | 2.1 | 4.0 | 4.0 | 2.9 | 7.7 |
| E029 | chr3 | 4467264 | 4467269 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0451 | 0.1848 | NA | NA | NA | 1.0 | 2.1 | 3.0 | 4.0 | 2.9 | 5.8 |
| E030 | chr3 | 4467269 | 4467273 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.0921 | 0.5543 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 1.0 | 2.0 | 4.8 |
| J031 | chr3 | 3702461 | 3777724 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J032 | chr3 | 3777803 | 3779240 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J033 | chr3 | 3779322 | 3782502 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J034 | chr3 | 3782701 | 3788913 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J035 | chr3 | 3789074 | 3795295 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J036 | chr3 | 3789074 | 3800700 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J037 | chr3 | 3789074 | 3822733 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.5382 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J038 | chr3 | 3795428 | 3797900 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J039 | chr3 | 3795428 | 3799711 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J040 | chr3 | 3822897 | 3827241 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.5382 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr3 | 3827509 | 4068568 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J042 | chr3 | 4068745 | 4376329 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.6 | 0.0183 | 0.202 | NA | NA | NA | 4.9 | 5.2 | 5.0 | 8.9 | 10.8 | 4.8 |
| J043 | chr3 | 4362254 | 4376329 | TRUE | OK | 298.3 | 0.00128 | 0.08574 | 0.6845 | -0.159 | -0.079 | 312.6 | 328.5 | 288.1 | 286.9 | 263.4 | 310.4 |
| J044 | chr3 | 4362254 | 4410864 | TRUE | OK | 12.0 | 0.0492 | 0.4411 | 0.8366 | 0.442 | 0.221 | 8.9 | 10.4 | 11.1 | 6.0 | 14.7 | 21.3 |
| J045 | chr3 | 4376389 | 4410864 | TRUE | OK | 300.5 | 0.000979 | 0.2286 | 0.7685 | -0.106 | -0.053 | 290.9 | 337.8 | 293.1 | 297.8 | 275.2 | 308.4 |
| J046 | chr3 | 4410978 | 4417127 | TRUE | OK | 247.4 | 0.00523 | 0.2741 | 0.7831 | 0.161 | 0.080 | 249.5 | 231.5 | 216.6 | 239.3 | 265.4 | 282.3 |
| J047 | chr3 | 4410978 | 4452875 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.0581 | 0.8766 | NA | NA | NA | 3.0 | 0.0 | 3.0 | 3.0 | 1.0 | 2.9 |
| J048 | chr3 | 4417242 | 4418009 | TRUE | OK | 267.8 | 0.0141 | 0.3542 | 0.8087 | 0.197 | 0.099 | 289.9 | 209.6 | 246.8 | 284.9 | 262.4 | 313.3 |
| J049 | chr3 | 4418132 | 4420063 | TRUE | OK | 237.9 | 0.0107 | 0.215 | 0.7632 | 0.239 | 0.119 | 258.3 | 200.2 | 194.4 | 289.9 | 224.3 | 260.1 |
| J050 | chr3 | 4420146 | 4449265 | TRUE | OK | 240.9 | 0.00274 | 0.1118 | 0.7093 | 0.194 | 0.097 | 234.7 | 225.2 | 211.5 | 284.9 | 225.2 | 263.9 |
| J051 | chr3 | 4420146 | 4452875 | TRUE | OK | 10.3 | 0.102 | 0.7655 | 0.9399 | 0.118 | 0.059 | 16.8 | 9.4 | 3.0 | 13.9 | 12.7 | 5.8 |
| J052 | chr3 | 4449340 | 4452875 | TRUE | OK | 231.8 | 0.00408 | 0.947 | 0.9875 | 0.017 | 0.008 | 243.5 | 233.6 | 207.5 | 254.2 | 194.9 | 257.2 |
| J053 | chr3 | 4453049 | 4466975 | TRUE | OK | 297.6 | 0.00575 | 0.1519 | 0.7355 | 0.213 | 0.107 | 280.0 | 257.6 | 288.1 | 323.6 | 313.4 | 322.9 |
| N054 | chr3 | 4303526 | 4312897 | TRUE | OK | 48.3 | 0.0148 | 0.06376 | 0.6532 | -0.492 | -0.246 | 64.1 | 42.8 | 60.4 | 45.7 | 38.2 | 38.7 |
| N055 | chr3 | 4303526 | 4313646 | TRUE | OK | 17.6 | 0.00795 | 0.3511 | 0.8077 | -0.296 | -0.148 | 23.7 | 19.8 | 14.1 | 13.9 | 14.7 | 19.3 |
| N056 | chr3 | 4303526 | 4316211 | TRUE | OK | 19.6 | 0.00662 | 0.0554 | 0.6384 | -0.574 | -0.287 | 25.6 | 20.9 | 23.2 | 14.9 | 17.6 | 15.5 |
| N057 | chr3 | 4313761 | 4316211 | TRUE | OK | 56.8 | 0.00295 | 1.001e-05 | 0.005518 | -0.812 | -0.406 | 66.1 | 75.1 | 73.5 | 42.7 | 37.2 | 46.4 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000144455.14 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |