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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr18 | 11981024 | 11981036 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.574 | 0.9041 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
E002 | chr18 | 11981036 | 11981130 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.112 | 0.9412 | NA | NA | NA | 3.9 | 1.0 | 2.0 | 1.0 | 2.0 | 5.8 |
E003 | chr18 | 11981130 | 11981205 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.9 | 0.124 | 0.2453 | NA | NA | NA | 4.9 | 1.0 | 1.0 | 3.0 | 3.9 | 9.7 |
E004 | chr18 | 11981427 | 11981464 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E005 | chr18 | 11981464 | 11981506 | TRUE | OK | 13.7 | 0.0151 | 0.0005342 | 0.09225 | -1.356 | -0.678 | 23.7 | 19.8 | 13.1 | 8.9 | 9.8 | 6.8 |
E006 | chr18 | 11981506 | 11981515 | TRUE | OK | 24.3 | 0.0166 | 0.06606 | 0.656 | -0.605 | -0.302 | 36.5 | 28.2 | 18.1 | 22.8 | 20.6 | 19.3 |
E007 | chr18 | 11981515 | 11981610 | TRUE | OK | 225.2 | 0.0054 | 0.2437 | 0.7735 | -0.168 | -0.084 | 226.8 | 236.7 | 202.5 | 253.2 | 234.0 | 198.2 |
E008 | chr18 | 11981610 | 11981669 | TRUE | OK | 429.6 | 0.00714 | 0.8212 | 0.9554 | -0.027 | -0.013 | 402.3 | 409.8 | 398.9 | 497.4 | 475.9 | 393.5 |
E009 | chr18 | 11981669 | 11981693 | TRUE | OK | 483.2 | 0.0096 | 0.8246 | 0.9564 | -0.029 | -0.014 | 474.3 | 444.2 | 444.2 | 563.9 | 534.7 | 438.0 |
E010 | chr18 | 11981693 | 11981765 | TRUE | OK | 532.9 | 0.0102 | 0.7999 | 0.9498 | -0.036 | -0.018 | 534.4 | 490.1 | 481.5 | 630.4 | 573.9 | 487.3 |
E011 | chr18 | 11999053 | 11999061 | TRUE | OK | 495.2 | 0.00963 | 0.8614 | 0.9662 | -0.022 | -0.011 | 497.9 | 451.5 | 444.2 | 589.7 | 525.9 | 462.1 |
E012 | chr18 | 11999061 | 11999135 | TRUE | OK | 686.8 | 0.00611 | 0.6854 | 0.9153 | -0.054 | -0.027 | 691.2 | 666.3 | 592.2 | 775.4 | 728.6 | 667.1 |
E013 | chr18 | 11999135 | 11999187 | TRUE | OK | 634.6 | 0.00677 | 0.8851 | 0.9723 | -0.018 | -0.009 | 648.8 | 585.0 | 548.9 | 710.8 | 619.9 | 694.2 |
E014 | chr18 | 12008332 | 12008360 | TRUE | OK | 11.6 | 0.019 | 0.158 | 0.738 | -0.577 | -0.288 | 15.8 | 10.4 | 13.1 | 6.9 | 8.8 | 14.5 |
E015 | chr18 | 12008360 | 12008591 | TRUE | OK | 19.3 | 0.0321 | 0.8455 | 0.962 | -0.070 | -0.035 | 24.7 | 12.5 | 18.1 | 12.9 | 23.5 | 24.2 |
E016 | chr18 | 12009882 | 12009899 | TRUE | OK | 530.7 | 0.00548 | 0.7552 | 0.9368 | -0.037 | -0.019 | 533.4 | 503.6 | 463.3 | 587.7 | 504.3 | 591.7 |
E017 | chr18 | 12009899 | 12009930 | TRUE | OK | 580.2 | 0.00405 | 0.6956 | 0.9185 | -0.043 | -0.022 | 568.9 | 575.6 | 498.6 | 632.4 | 553.3 | 652.6 |
E018 | chr18 | 12009930 | 12009987 | TRUE | OK | 610.9 | 0.00383 | 0.8724 | 0.969 | 0.022 | 0.011 | 580.8 | 593.3 | 521.7 | 685.0 | 593.4 | 691.3 |
E019 | chr18 | 12009987 | 12010221 | TRUE | OK | 35.4 | 0.0185 | 0.002213 | 0.2016 | 0.970 | 0.485 | 17.7 | 22.9 | 25.2 | 32.8 | 56.8 | 57.0 |
E020 | chr18 | 12012169 | 12012215 | TRUE | OK | 581.3 | 0.00381 | 0.8506 | 0.9634 | 0.026 | 0.013 | 531.5 | 568.3 | 511.7 | 670.1 | 561.1 | 644.9 |
E021 | chr18 | 12012215 | 12012349 | TRUE | OK | 39.0 | 0.00692 | 0.02544 | 0.528 | 0.538 | 0.269 | 29.6 | 27.1 | 31.2 | 43.7 | 57.8 | 44.5 |
E022 | chr18 | 12014264 | 12014373 | TRUE | OK | 746.7 | 0.00372 | 0.7278 | 0.9288 | 0.043 | 0.021 | 683.3 | 741.4 | 636.6 | 827.0 | 723.7 | 868.2 |
E023 | chr18 | 12017613 | 12018285 | TRUE | OK | 14.2 | 0.011 | 0.1605 | 0.7393 | 0.513 | 0.256 | 9.9 | 12.5 | 10.1 | 15.9 | 20.6 | 16.4 |
E024 | chr18 | 12021701 | 12021822 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0748 | 0.05944 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 2.0 | 4.9 | 2.9 |
E025 | chr18 | 12028042 | 12028118 | TRUE | OK | 667.6 | 0.00196 | 0.164 | 0.7411 | 0.125 | 0.063 | 585.7 | 665.3 | 545.9 | 727.7 | 691.4 | 789.9 |
E026 | chr18 | 12028118 | 12028151 | TRUE | OK | 557.2 | 0.00134 | 0.0293 | 0.549 | 0.179 | 0.089 | 476.2 | 548.5 | 447.2 | 609.6 | 603.2 | 658.4 |
E027 | chr18 | 12028151 | 12028607 | TRUE | OK | 209.9 | 0.00566 | 1.735e-05 | 0.008545 | 0.664 | 0.332 | 156.8 | 154.3 | 144.0 | 224.4 | 287.9 | 292.0 |
E028 | chr18 | 12028607 | 12028684 | TRUE | OK | 72.4 | 0.0071 | 0.0004215 | 0.08032 | 0.717 | 0.358 | 57.2 | 52.1 | 42.3 | 79.4 | 108.7 | 94.7 |
E029 | chr18 | 12028684 | 12028841 | TRUE | OK | 110.6 | 0.00849 | 0.01247 | 0.4203 | 0.485 | 0.242 | 95.6 | 71.9 | 88.6 | 130.1 | 147.9 | 129.6 |
E030 | chr18 | 12028841 | 12028962 | TRUE | OK | 888.6 | 0.00134 | 0.753 | 0.9361 | 0.024 | 0.012 | 794.7 | 915.5 | 757.4 | 920.3 | 931.3 | 1012.3 |
E031 | chr18 | 12028962 | 12028993 | TRUE | OK | 657.0 | 0.00158 | 0.5424 | 0.8696 | -0.051 | -0.025 | 618.2 | 686.1 | 560.0 | 665.2 | 676.7 | 735.8 |
E032 | chr18 | 12030342 | 12030458 | TRUE | OK | 1029.2 | 0.00283 | 0.02151 | 0.5032 | -0.231 | -0.115 | 974.2 | 1164.7 | 909.5 | 1030.5 | 989.1 | 1107.0 |
E033 | chr18 | 12030458 | 12030473 | TRUE | OK | 711.1 | 0.00336 | 0.06198 | 0.6507 | -0.207 | -0.103 | 671.5 | 815.4 | 621.5 | 730.7 | 664.9 | 762.8 |
E034 | chr18 | 12030473 | 12030516 | TRUE | OK | 760.9 | 0.00315 | 0.02488 | 0.5245 | -0.241 | -0.121 | 717.8 | 883.2 | 673.8 | 775.4 | 718.8 | 796.7 |
E035 | chr18 | 12030516 | 12030868 | TRUE | OK | 991.2 | 0.00348 | 0.01991 | 0.4911 | -0.258 | -0.129 | 901.2 | 1159.5 | 897.4 | 958.0 | 977.3 | 1053.9 |
E036 | chr18 | 12030868 | 12030875 | TRUE | OK | 72.9 | 0.0157 | 0.6151 | 0.8929 | 0.146 | 0.073 | 72.0 | 63.6 | 57.4 | 56.6 | 91.1 | 96.7 |
E037 | chr18 | 12030875 | 12030877 | TRUE | OK | 34.2 | 0.0101 | 0.3572 | 0.8098 | 0.251 | 0.126 | 31.6 | 27.1 | 28.2 | 32.8 | 49.9 | 35.8 |
J038 | chr18 | 11981130 | 11999053 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0929 | 0.5921 | NA | NA | NA | 3.0 | 1.0 | 1.0 | 1.0 | 0.0 | 2.9 |
J039 | chr18 | 11981205 | 11999053 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.9 | 0.12 | 0.2421 | NA | NA | NA | 4.9 | 1.0 | 1.0 | 3.0 | 3.9 | 9.7 |
J040 | chr18 | 11981693 | 11999061 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.5 | 0.0984 | 0.2678 | NA | NA | NA | 11.8 | 5.2 | 3.0 | 6.9 | 2.0 | 3.9 |
J041 | chr18 | 11981765 | 11999053 | TRUE | OK | 473.0 | 0.00966 | 0.9349 | 0.9846 | -0.005 | -0.003 | 468.4 | 429.6 | 426.1 | 566.9 | 509.2 | 438.0 |
J042 | chr18 | 11999187 | 12008332 | TRUE | OK | 10.4 | 0.0117 | 0.2355 | 0.7709 | -0.475 | -0.238 | 11.8 | 10.4 | 12.1 | 6.9 | 7.8 | 13.5 |
J043 | chr18 | 11999187 | 12009882 | TRUE | OK | 495.3 | 0.00541 | 0.9625 | 0.9913 | -0.002 | -0.001 | 496.9 | 468.2 | 420.0 | 551.0 | 473.0 | 562.7 |
J044 | chr18 | 12008591 | 12009882 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.1 | 0.0134 | 0.529 | NA | NA | NA | 8.9 | 4.2 | 7.1 | 8.9 | 9.8 | 9.7 |
J045 | chr18 | 12009987 | 12012169 | TRUE | OK | 443.1 | 0.00459 | 0.7859 | 0.946 | -0.029 | -0.014 | 416.1 | 434.8 | 398.9 | 512.3 | 410.3 | 486.3 |
J046 | chr18 | 12009987 | 12014264 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.6379 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J047 | chr18 | 12012215 | 12014264 | TRUE | OK | 433.5 | 0.00581 | 0.8275 | 0.9572 | 0.039 | 0.019 | 396.4 | 422.3 | 377.7 | 499.4 | 394.6 | 510.5 |
J048 | chr18 | 12012349 | 12014264 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0438 | 0.3241 | NA | NA | NA | 2.0 | 2.1 | 3.0 | 4.0 | 2.0 | 7.7 |
J049 | chr18 | 12014373 | 12017613 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0308 | 0.7257 | NA | NA | NA | 3.0 | 2.1 | 2.0 | 4.0 | 2.9 | 2.9 |
J050 | chr18 | 12014373 | 12021701 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.158 | 0.1348 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 |
J051 | chr18 | 12014373 | 12028042 | TRUE | OK | 486.2 | 0.00264 | 0.5623 | 0.8757 | 0.061 | 0.030 | 430.9 | 501.5 | 400.9 | 525.2 | 479.8 | 579.1 |
J052 | chr18 | 12021822 | 12028042 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.55 | 0.4895 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
J053 | chr18 | 12028151 | 12028841 | TRUE | OK | 428.1 | 0.00114 | 0.05271 | 0.6323 | 0.161 | 0.081 | 363.8 | 428.6 | 342.5 | 476.5 | 453.4 | 503.7 |
J054 | chr18 | 12028993 | 12030342 | TRUE | OK | 578.3 | 0.0012 | 0.2239 | 0.7664 | -0.094 | -0.047 | 554.1 | 599.6 | 509.7 | 577.8 | 581.7 | 646.8 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000141401.12 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |