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Normalized Counts Table (ENSG00000139546.10)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr12	53500920	53500925	TRUE	OK	11.3	0.0133	0.5547	0.8731	0.244	0.122	10.8	12.5	10.1	9.9	9.8	14.5
E002	chr12	53500925	53500952	TRUE	OK	18.6	0.0111	0.5409	0.8692	0.211	0.106	19.7	17.7	18.1	16.9	14.7	24.2
E003	chr12	53500952	53501001	TRUE	OK	22.7	0.0136	0.8134	0.9535	0.095	0.048	22.7	21.9	26.2	15.9	19.6	30.0
E004	chr12	53501001	53501273	TRUE	OK	43.4	0.00543	0.3656	0.8122	-0.190	-0.095	44.4	54.2	49.4	32.8	33.3	46.4
E005	chr12	53501273	53501301	TRUE	OK	55.6	0.00517	0.9514	0.9887	-0.006	-0.003	61.1	61.5	56.4	53.6	46.0	55.1
E006	chr12	53501301	53501304	TRUE	OK	55.9	0.0067	0.7411	0.933	-0.057	-0.029	66.1	59.4	57.4	44.7	48.0	59.9
E007	chr12	53501304	53501305	TRUE	OK	55.9	0.0067	0.7411	0.933	-0.057	-0.029	66.1	59.4	57.4	44.7	48.0	59.9
E008	chr12	53501305	53501331	TRUE	OK	146.3	0.0139	0.4814	0.8498	0.189	0.095	143.0	144.9	155.1	111.2	136.1	187.6
E009	chr12	53501331	53501349	TRUE	OK	177.5	0.00982	0.3415	0.8045	0.204	0.102	175.5	182.5	177.3	147.9	159.6	222.4
E010	chr12	53501349	53501365	TRUE	OK	211.9	0.00854	0.2333	0.7702	0.228	0.114	210.0	217.9	206.5	191.6	187.0	258.1
E011	chr12	53501365	53501461	TRUE	OK	576.6	0.00705	0.2635	0.7802	0.182	0.091	569.9	608.9	587.2	533.1	525.9	634.2
E012	chr12	53501590	53501596	FALSE	LOW_COUNTS_INDEP_FILTER	9.2	0.0679	0.4471	NA	NA	NA	7.9	4.2	13.1	6.9	7.8	15.5
E013	chr12	53501596	53501598	TRUE	OK	10.2	0.0892	0.293	0.7896	0.726	0.363	7.9	4.2	13.1	6.9	8.8	20.3
E014	chr12	53501598	53501603	TRUE	OK	10.7	0.0536	0.09625	0.6951	0.935	0.468	8.9	4.2	11.1	8.9	10.8	20.3
E015	chr12	53501603	53501604	TRUE	OK	11.2	0.0554	0.1268	0.7213	0.855	0.428	10.8	4.2	11.1	8.9	11.8	20.3
E016	chr12	53501604	53501618	TRUE	OK	16.4	0.0869	0.1049	0.7024	0.937	0.468	16.8	4.2	16.1	15.9	16.6	29.0
E017	chr12	53501618	53501708	TRUE	OK	32.1	0.025	0.004154	0.2721	1.007	0.503	29.6	18.8	22.2	31.8	35.3	55.1
E018	chr12	53502014	53502019	TRUE	OK	514.6	0.00602	0.05421	0.6355	0.286	0.143	500.9	528.7	499.6	488.5	489.6	580.1
E019	chr12	53502019	53502050	TRUE	OK	630.0	0.00753	0.09643	0.6953	0.273	0.136	615.3	647.5	623.5	580.8	594.4	718.4
E020	chr12	53502050	53502059	TRUE	OK	595.3	0.00837	0.1332	0.7252	0.260	0.130	584.7	603.7	598.3	554.0	557.2	673.9
E021	chr12	53502059	53502184	TRUE	OK	833.6	0.00781	0.02472	0.5236	0.364	0.182	809.5	834.2	814.8	800.2	824.6	918.5
E022	chr12	53502184	53502602	TRUE	OK	26.4	0.0193	0.7879	0.9464	-0.077	-0.039	28.6	22.9	35.3	22.8	28.4	20.3
E023	chr12	53502602	53502920	TRUE	OK	18.7	0.0878	0.4894	0.8525	-0.429	-0.214	36.5	14.6	17.1	21.8	12.7	9.7
E024	chr12	53502920	53503026	TRUE	OK	28.6	0.0297	0.4286	0.8325	-0.280	-0.140	42.4	27.1	30.2	24.8	29.4	17.4
E025	chr12	53503026	53503129	TRUE	OK	711.0	0.00601	0.07298	0.6674	0.265	0.132	698.1	738.2	703.0	647.3	694.3	785.1
E026	chr12	53503129	53503212	TRUE	OK	112.1	0.0128	0.2935	0.7896	0.265	0.133	112.4	111.6	106.8	80.4	117.5	144.1
E027	chr12	53503212	53503458	TRUE	OK	93.0	0.0204	0.4717	0.8467	0.229	0.115	77.9	91.8	107.8	63.5	94.0	122.8
E028	chr12	53503458	53503472	TRUE	OK	44.7	0.028	0.4616	0.8433	0.269	0.134	39.4	35.5	56.4	30.8	49.0	57.0
E029	chr12	53503472	53503473	TRUE	OK	44.2	0.0307	0.4184	0.8297	0.303	0.152	39.4	33.4	55.4	30.8	48.0	58.0
E030	chr12	53503473	53503549	TRUE	OK	52.6	0.0259	0.2654	0.781	0.401	0.200	46.3	44.8	56.4	32.8	66.6	68.6
E031	chr12	53503549	53503698	TRUE	OK	82.3	0.00868	0.8487	0.9629	0.054	0.027	77.9	84.5	97.7	61.6	84.2	88.0
E032	chr12	53503698	53503712	TRUE	OK	57.6	0.00555	0.2334	0.7703	-0.233	-0.116	60.1	66.7	71.5	48.6	52.9	45.4
E033	chr12	53503712	53503713	TRUE	OK	409.0	0.00164	0.419	0.8299	0.079	0.039	391.4	477.6	417.0	369.3	391.7	407.0
E034	chr12	53503713	53503729	TRUE	OK	450.8	0.00183	0.5655	0.8767	0.058	0.029	425.0	529.7	471.4	399.1	438.7	440.9
E035	chr12	53503729	53503808	TRUE	OK	530.3	0.0014	0.6858	0.9154	0.037	0.018	508.8	636.1	542.9	469.6	514.1	510.5
E036	chr12	53503808	53504395	TRUE	OK	151.9	0.019	0.2584	0.7784	0.334	0.167	142.0	162.7	134.0	98.3	198.8	176.0
E037	chr12	53504395	53504396	TRUE	OK	46.8	0.0362	0.501	0.8559	0.281	0.140	47.3	59.4	30.2	24.8	61.7	57.0
E038	chr12	53504396	53504469	TRUE	OK	486.9	0.00148	0.169	0.7438	0.119	0.060	453.6	604.8	457.3	428.9	503.3	473.7
E039	chr12	53504611	53504697	TRUE	OK	61.9	0.00785	0.8861	0.9726	0.017	0.008	60.1	90.7	47.3	54.6	63.7	55.1
E040	chr12	53504697	53504719	TRUE	OK	438.1	0.00275	0.5456	0.8704	0.061	0.031	418.1	551.6	415.0	407.0	440.7	396.4
E041	chr12	53504719	53504787	TRUE	OK	551.9	0.0029	0.2984	0.7914	0.105	0.052	526.5	692.4	506.6	515.3	559.2	511.5
E042	chr12	53504787	53504815	TRUE	OK	455.9	0.00288	0.8992	0.9759	-0.020	-0.010	449.6	593.3	430.1	422.9	421.1	418.6
E043	chr12	53505134	53505262	TRUE	OK	552.6	0.00523	0.5344	0.8669	-0.096	-0.048	556.1	753.9	509.7	507.3	493.6	495.0
E044	chr12	53505648	53505686	TRUE	OK	442.4	0.00529	0.002394	0.2103	-0.422	-0.211	487.1	642.3	452.2	370.3	329.0	373.2
E045	chr12	53505686	53505731	TRUE	OK	406.9	0.00712	0.019	0.4834	-0.379	-0.190	444.7	608.9	388.8	343.5	312.4	343.2
E046	chr12	53505731	53505793	TRUE	OK	459.8	0.00666	0.06334	0.6527	-0.291	-0.145	499.9	660.0	432.1	401.1	372.1	393.5
E047	chr12	53505793	53505850	TRUE	OK	332.6	0.0112	0.1135	0.7114	-0.324	-0.162	378.6	497.4	290.1	288.9	259.5	281.3
E048	chr12	53505850	53505851	FALSE	LOW_COUNTS_INDEP_FILTER	6.7	0.0302	0.5993	NA	NA	NA	3.9	10.4	9.1	3.0	4.9	8.7
E049	chr12	53505990	53506229	TRUE	OK	564.9	0.0101	0.0642	0.6539	-0.357	-0.178	595.5	867.5	516.7	475.5	478.9	455.4
E050	chr12	53506229	53506396	TRUE	OK	242.9	0.00718	0.02362	0.5165	-0.394	-0.197	251.4	391.0	227.6	188.6	199.8	199.2
E051	chr12	53506396	53506399	TRUE	OK	39.7	0.00587	0.4913	0.8531	-0.148	-0.074	38.5	50.1	45.3	26.8	34.3	43.5
E052	chr12	53506399	53506412	TRUE	OK	35.4	0.0065	0.414	0.8285	-0.185	-0.093	37.5	41.7	41.3	22.8	31.3	37.7
E053	chr12	53506412	53506423	FALSE	LOW_COUNTS_INDEP_FILTER	8.7	0.0175	0.3782	NA	NA	NA	11.8	11.5	8.1	7.9	5.9	6.8
E054	chr12	53506423	53506424	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.102	0.1843	NA	NA	NA	4.9	3.1	1.0	2.0	0.0	1.0
E055	chr12	53506424	53506431	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.229	0.3606	NA	NA	NA	4.9	3.1	0.0	2.0	0.0	1.0
J056	chr12	53501001	53502019	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.699	0.4151	NA	NA	NA	0.0	0.0	2.0	0.0	0.0	0.0
J057	chr12	53501461	53502014	TRUE	OK	473.1	0.00478	0.09314	0.6918	0.228	0.114	459.5	499.5	468.4	449.7	442.6	519.2
J058	chr12	53501461	53502059	FALSE	LOW_COUNTS_INDEP_FILTER	8.8	0.0121	0.4649	NA	NA	NA	7.9	10.4	7.1	8.9	11.8	6.8
J059	chr12	53501461	53503026	TRUE	OK	20.6	0.0171	0.9861	0.9966	0.018	0.009	17.7	19.8	28.2	16.9	15.7	25.1
J060	chr12	53501461	53503712	FALSE	LOW_COUNTS_INDEP_FILTER	5.5	0.0237	0.2566	NA	NA	NA	7.9	8.3	5.0	5.0	5.9	1.0
J061	chr12	53501708	53502014	TRUE	OK	18.1	0.0246	8.38e-05	0.0275	1.583	0.792	14.8	8.3	7.1	19.9	23.5	34.8
J062	chr12	53501708	53503026	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.135	0.8726	NA	NA	NA	1.0	3.1	0.0	2.0	1.0	0.0
J063	chr12	53502184	53503026	TRUE	OK	473.6	0.00932	0.02966	0.5509	0.388	0.194	484.1	447.3	432.1	454.7	475.0	548.2
J064	chr12	53503129	53503712	TRUE	OK	325.9	0.00108	0.04787	0.6197	0.179	0.089	304.7	373.3	316.3	299.8	316.3	345.2
J065	chr12	53503129	53503729	TRUE	OK	19.1	0.00852	0.3558	0.8094	-0.274	-0.137	22.7	21.9	22.2	8.9	18.6	20.3
J066	chr12	53503212	53503458	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.696	0.4145	NA	NA	NA	2.0	0.0	0.0	0.0	0.0	0.0
J067	chr12	53503212	53503712	TRUE	OK	14.0	0.00762	0.4513	0.8398	-0.259	-0.129	13.8	19.8	15.1	8.9	11.8	14.5
J068	chr12	53503212	53503729	FALSE	LOW_COUNTS_INDEP_FILTER	8.1	0.0684	0.553	NA	NA	NA	15.8	8.3	5.0	4.0	9.8	5.8
J069	chr12	53503808	53504396	TRUE	OK	325.4	0.00108	0.909	0.9784	0.011	0.006	305.7	407.7	329.4	284.9	321.2	303.6
J070	chr12	53504469	53504611	TRUE	OK	25.9	0.0242	0.1043	0.7019	0.530	0.265	16.8	38.6	14.1	21.8	33.3	30.9
J071	chr12	53504469	53504697	TRUE	OK	318.1	0.00203	0.2632	0.7801	0.115	0.057	291.9	390.0	307.2	292.9	335.9	291.0
J072	chr12	53504815	53505134	TRUE	OK	321.0	0.00366	0.1963	0.7564	0.151	0.075	296.8	405.6	285.0	323.6	308.5	306.5
J073	chr12	53504815	53505648	TRUE	OK	50.0	0.00429	1.164e-06	0.0009501	-1.007	-0.504	70.0	82.4	56.4	25.8	26.4	38.7
J074	chr12	53505262	53505648	TRUE	OK	321.7	0.00515	0.05249	0.632	-0.281	-0.140	327.4	466.1	322.3	286.9	254.6	272.6
J075	chr12	53505850	53505990	TRUE	OK	236.0	0.0148	0.3653	0.8121	-0.216	-0.108	279.0	329.5	197.4	225.4	195.9	188.5
N076	chr12	53501461	53502019	TRUE	OK	18.0	0.025	0.7661	0.94	0.134	0.067	20.7	13.6	21.2	16.9	12.7	23.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000139546.10
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE