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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr2 | 159712456 | 159712498 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.3 | 0.0226 | 0.1313 | NA | NA | NA | 5.9 | 3.1 | 4.0 | 7.9 | 6.9 | 9.7 |
E002 | chr2 | 159712498 | 159712505 | TRUE | OK | 21.6 | 0.0474 | 0.7692 | 0.941 | -0.146 | -0.073 | 23.7 | 11.5 | 31.2 | 16.9 | 15.7 | 30.9 |
E003 | chr2 | 159712505 | 159712506 | TRUE | OK | 22.5 | 0.0547 | 0.7131 | 0.9238 | -0.167 | -0.083 | 24.7 | 12.5 | 32.2 | 16.9 | 14.7 | 33.8 |
E004 | chr2 | 159712506 | 159712522 | TRUE | OK | 56.9 | 0.0381 | 0.7208 | 0.9263 | -0.139 | -0.070 | 66.1 | 34.4 | 73.5 | 57.6 | 36.2 | 73.5 |
E005 | chr2 | 159712522 | 159712606 | TRUE | OK | 299.5 | 0.0361 | 0.5722 | 0.8789 | 0.117 | 0.058 | 355.9 | 153.3 | 329.4 | 316.7 | 268.3 | 373.2 |
E006 | chr2 | 159712606 | 159712661 | TRUE | OK | 204.1 | 0.0317 | 0.629 | 0.8973 | 0.081 | 0.041 | 250.4 | 106.4 | 221.6 | 212.5 | 191.9 | 241.7 |
E007 | chr2 | 159714556 | 159714598 | TRUE | OK | 36.8 | 0.0202 | 0.9133 | 0.9796 | -0.058 | -0.029 | 46.3 | 20.9 | 42.3 | 33.8 | 33.3 | 44.5 |
E008 | chr2 | 159715680 | 159715766 | TRUE | OK | 17.2 | 0.0401 | 0.7029 | 0.9207 | -0.178 | -0.089 | 25.6 | 10.4 | 17.1 | 16.9 | 9.8 | 23.2 |
E009 | chr2 | 159729008 | 159729175 | TRUE | OK | 576.7 | 0.0547 | 0.2953 | 0.7901 | 0.324 | 0.162 | 681.3 | 274.2 | 548.9 | 654.2 | 620.9 | 680.7 |
E010 | chr2 | 159733964 | 159734082 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.1 | 0.119 | 0.1745 | NA | NA | NA | 3.0 | 1.0 | 3.0 | 1.0 | 7.8 | 8.7 |
E011 | chr2 | 159743060 | 159743211 | TRUE | OK | 725.8 | 0.0191 | 0.2158 | 0.7634 | 0.247 | 0.124 | 775.0 | 425.4 | 749.4 | 786.3 | 787.3 | 831.5 |
E012 | chr2 | 159743211 | 159743253 | TRUE | OK | 552.3 | 0.0165 | 0.4285 | 0.8325 | 0.140 | 0.070 | 562.0 | 349.3 | 625.5 | 636.4 | 565.0 | 575.3 |
E013 | chr2 | 159745769 | 159745937 | TRUE | OK | 806.7 | 0.0236 | 0.3547 | 0.8089 | 0.206 | 0.103 | 885.4 | 504.7 | 809.8 | 943.1 | 807.9 | 889.5 |
E014 | chr2 | 159747804 | 159748126 | TRUE | OK | 1042.7 | 0.0177 | 0.2845 | 0.7864 | 0.204 | 0.102 | 1184.2 | 654.8 | 1013.3 | 1210.2 | 1061.5 | 1132.2 |
E015 | chr2 | 159748126 | 159748903 | TRUE | OK | 1949.9 | 0.00244 | 0.2349 | 0.7707 | 0.100 | 0.050 | 1978.9 | 1622.5 | 1937.9 | 1995.5 | 2090.8 | 2073.9 |
E016 | chr2 | 159752401 | 159752489 | TRUE | OK | 761.4 | 0.00106 | 0.4606 | 0.8431 | 0.051 | 0.026 | 771.1 | 689.2 | 724.2 | 770.4 | 805.9 | 807.3 |
E017 | chr2 | 159752489 | 159752525 | TRUE | OK | 670.2 | 0.00135 | 0.1447 | 0.7323 | 0.111 | 0.056 | 687.2 | 575.6 | 621.5 | 695.9 | 699.2 | 741.6 |
E018 | chr2 | 159752525 | 159752571 | TRUE | OK | 709.1 | 0.00158 | 0.6025 | 0.8886 | 0.042 | 0.021 | 734.6 | 641.3 | 664.8 | 715.8 | 712.9 | 785.1 |
E019 | chr2 | 159759225 | 159759291 | TRUE | OK | 745.5 | 0.00152 | 0.4205 | 0.8302 | 0.064 | 0.032 | 765.1 | 661.1 | 704.0 | 795.2 | 726.6 | 820.8 |
E020 | chr2 | 159759291 | 159759335 | TRUE | OK | 657.0 | 0.00281 | 0.8866 | 0.9728 | -0.014 | -0.007 | 706.0 | 601.6 | 617.4 | 714.8 | 605.2 | 697.1 |
E021 | chr2 | 159759335 | 159759358 | TRUE | OK | 26.1 | 0.00903 | 0.009073 | 0.3791 | -0.743 | -0.371 | 31.6 | 24.0 | 40.3 | 22.8 | 17.6 | 20.3 |
E022 | chr2 | 159762879 | 159762993 | TRUE | OK | 896.0 | 0.00344 | 0.9852 | 0.9963 | 0.004 | 0.002 | 949.5 | 840.4 | 820.9 | 962.0 | 828.5 | 974.6 |
E023 | chr2 | 159764625 | 159764674 | TRUE | OK | 690.2 | 0.00438 | 0.6172 | 0.8935 | 0.062 | 0.031 | 707.0 | 664.2 | 602.3 | 728.7 | 655.1 | 784.1 |
E024 | chr2 | 159767283 | 159767409 | TRUE | OK | 826.4 | 0.00497 | 0.7417 | 0.9331 | -0.042 | -0.021 | 861.8 | 854.0 | 727.2 | 822.0 | 807.9 | 885.6 |
E025 | chr2 | 159767409 | 159767850 | TRUE | OK | 1374.0 | 0.00402 | 0.1693 | 0.744 | -0.152 | -0.076 | 1425.8 | 1459.8 | 1299.3 | 1362.1 | 1327.9 | 1369.0 |
E026 | chr2 | 159767850 | 159767960 | TRUE | OK | 680.4 | 0.00468 | 0.3902 | 0.8205 | -0.105 | -0.053 | 648.8 | 737.2 | 666.8 | 692.0 | 660.0 | 677.8 |
E027 | chr2 | 159767960 | 159768583 | TRUE | OK | 1398.9 | 0.0184 | 0.3808 | 0.8173 | -0.209 | -0.104 | 1267.0 | 1744.5 | 1315.4 | 1425.6 | 1340.6 | 1300.4 |
E028 | chr2 | 159768583 | 159771027 | TRUE | OK | 303.8 | 0.00354 | 0.1056 | 0.7032 | -0.194 | -0.097 | 291.9 | 321.2 | 332.4 | 279.0 | 300.6 | 297.8 |
J029 | chr2 | 159712606 | 159714556 | TRUE | OK | 14.2 | 0.0331 | 0.9374 | 0.9852 | -0.055 | -0.028 | 17.7 | 6.3 | 18.1 | 14.9 | 9.8 | 18.4 |
J030 | chr2 | 159712606 | 159729008 | TRUE | OK | 108.9 | 0.0335 | 0.4354 | 0.8346 | 0.200 | 0.100 | 121.3 | 53.2 | 120.9 | 110.2 | 105.8 | 142.1 |
J031 | chr2 | 159712661 | 159715680 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0718 | 0.9269 | NA | NA | NA | 5.9 | 3.1 | 0.0 | 3.0 | 2.9 | 3.9 |
J032 | chr2 | 159712661 | 159729008 | TRUE | OK | 161.5 | 0.0462 | 0.555 | 0.8732 | 0.126 | 0.063 | 201.1 | 73.0 | 176.3 | 170.8 | 150.8 | 197.2 |
J033 | chr2 | 159714598 | 159715680 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.4 | 0.0398 | 0.9058 | NA | NA | NA | 11.8 | 4.2 | 9.1 | 9.9 | 3.9 | 11.6 |
J034 | chr2 | 159715766 | 159729008 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.6 | 0.0506 | 0.3675 | NA | NA | NA | 11.8 | 3.1 | 8.1 | 4.0 | 3.9 | 8.7 |
J035 | chr2 | 159729175 | 159743060 | TRUE | OK | 357.8 | 0.0314 | 0.0531 | 0.6332 | 0.511 | 0.256 | 403.3 | 166.8 | 295.1 | 408.0 | 426.0 | 447.6 |
J036 | chr2 | 159734082 | 159743060 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J037 | chr2 | 159743253 | 159745769 | TRUE | OK | 449.9 | 0.0143 | 0.4524 | 0.8402 | 0.127 | 0.063 | 440.7 | 297.2 | 518.7 | 516.3 | 459.3 | 467.0 |
J038 | chr2 | 159743253 | 159747804 | TRUE | OK | 27.4 | 0.0436 | 0.6392 | 0.9008 | 0.124 | 0.062 | 28.6 | 10.4 | 37.3 | 27.8 | 27.4 | 32.9 |
J039 | chr2 | 159745937 | 159747804 | TRUE | OK | 462.0 | 0.0276 | 0.1472 | 0.7334 | 0.358 | 0.179 | 537.4 | 249.2 | 400.9 | 581.8 | 448.5 | 554.0 |
J040 | chr2 | 159745937 | 159752401 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J041 | chr2 | 159748903 | 159752401 | TRUE | OK | 559.8 | 0.0011 | 0.6883 | 0.9162 | 0.031 | 0.015 | 557.1 | 531.8 | 527.8 | 555.0 | 586.6 | 600.4 |
J042 | chr2 | 159752571 | 159759225 | TRUE | OK | 537.6 | 0.00116 | 0.7266 | 0.9283 | 0.027 | 0.014 | 549.2 | 493.2 | 511.7 | 543.1 | 529.8 | 598.5 |
J043 | chr2 | 159759335 | 159762879 | TRUE | OK | 536.8 | 0.00335 | 0.4429 | 0.8372 | 0.086 | 0.043 | 558.1 | 484.9 | 478.4 | 594.7 | 499.4 | 605.2 |
J044 | chr2 | 159759358 | 159762879 | TRUE | OK | 10.2 | 0.0133 | 3.086e-05 | 0.01301 | -1.874 | -0.937 | 15.8 | 12.5 | 19.1 | 7.9 | 2.0 | 3.9 |
J045 | chr2 | 159762993 | 159764625 | TRUE | OK | 517.3 | 0.00421 | 0.768 | 0.9406 | 0.036 | 0.018 | 544.3 | 499.5 | 447.2 | 546.0 | 485.7 | 581.1 |
J046 | chr2 | 159762993 | 159767283 | TRUE | OK | 45.7 | 0.00311 | 0.6819 | 0.9143 | -0.084 | -0.042 | 52.3 | 38.6 | 46.3 | 46.7 | 46.0 | 44.5 |
J047 | chr2 | 159764674 | 159767283 | TRUE | OK | 486.5 | 0.00486 | 0.8099 | 0.9525 | 0.033 | 0.017 | 476.2 | 500.5 | 427.1 | 513.3 | 460.3 | 541.4 |
N048 | chr2 | 159712661 | 159714556 | TRUE | OK | 17.0 | 0.00846 | 0.9131 | 0.9795 | -0.041 | -0.020 | 19.7 | 10.4 | 20.1 | 13.9 | 18.6 | 19.3 |
N049 | chr2 | 159714598 | 159715532 | TRUE | OK | 13.7 | 0.0239 | 0.9988 | 0.9996 | -0.020 | -0.010 | 14.8 | 6.3 | 19.1 | 10.9 | 15.7 | 15.5 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000136536.15 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |