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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr12 | 110627840 | 110628176 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.8 | 0.119 | 0.9661 | NA | NA | NA | 3.9 | 1.0 | 8.1 | 6.9 | 4.9 | 3.9 |
| E002 | chr12 | 110648685 | 110648778 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0388 | 0.1261 | NA | NA | NA | 2.0 | 1.0 | 3.0 | 5.0 | 3.9 | 7.7 |
| E003 | chr12 | 110648778 | 110648796 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.6 | 0.0744 | 0.3491 | NA | NA | NA | 2.0 | 1.0 | 6.0 | 5.0 | 3.9 | 9.7 |
| E004 | chr12 | 110648796 | 110649132 | TRUE | OK | 58.2 | 0.0148 | 0.8454 | 0.962 | -0.091 | -0.045 | 49.3 | 63.6 | 42.3 | 63.5 | 56.8 | 73.5 |
| E005 | chr12 | 110649132 | 110649475 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.11 | 0.3342 | NA | NA | NA | 9.9 | 8.3 | 2.0 | 3.0 | 2.9 | 10.6 |
| E006 | chr12 | 110650167 | 110650280 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.1 | 0.0332 | 0.6709 | NA | NA | NA | 3.9 | 3.1 | 5.0 | 3.0 | 6.9 | 8.7 |
| E007 | chr12 | 110651216 | 110651217 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.07 | 0.2685 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 2.0 | 2.0 | 6.8 |
| E008 | chr12 | 110651217 | 110651324 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0869 | 0.2416 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 2.0 | 2.9 | 8.7 |
| E009 | chr12 | 110651324 | 110651448 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.4 | 0.0541 | 0.4455 | NA | NA | NA | 2.0 | 1.0 | 4.0 | 3.0 | 2.9 | 7.7 |
| E010 | chr12 | 110655233 | 110655338 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.103 | 0.6869 | NA | NA | NA | 3.0 | 0.0 | 4.0 | 3.0 | 2.0 | 6.8 |
| E011 | chr12 | 110661163 | 110661234 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.13 | 0.9628 | NA | NA | NA | 2.0 | 1.0 | 1.0 | 0.0 | 1.0 | 4.8 |
| E012 | chr12 | 110661234 | 110661279 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.155 | 0.2847 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 0.0 | 3.9 | 2.9 |
| E013 | chr12 | 110661279 | 110661448 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0985 | 0.8927 | NA | NA | NA | 3.9 | 3.1 | 3.0 | 0.0 | 5.9 | 6.8 |
| E014 | chr12 | 110682654 | 110683224 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.854 | 0.7085 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E015 | chr12 | 110683224 | 110683264 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0682 | 0.3284 | NA | NA | NA | 3.0 | 2.1 | 3.0 | 0.0 | 2.0 | 3.9 |
| E016 | chr12 | 110683264 | 110683267 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E017 | chr12 | 110687974 | 110688624 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.862 | 0.71 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E018 | chr12 | 110688624 | 110688708 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0646 | 0.1054 | NA | NA | NA | 2.0 | 5.2 | 3.0 | 0.0 | 2.9 | 1.9 |
| E019 | chr12 | 110688708 | 110688709 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.639 | 0.2897 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 0.0 | 0.0 | 0.0 |
| E020 | chr12 | 110689079 | 110689157 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E021 | chr12 | 110689311 | 110689417 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E022 | chr12 | 110689725 | 110689778 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.862 | 0.71 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E023 | chr12 | 110689778 | 110689809 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.862 | 0.71 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E024 | chr12 | 110689809 | 110689819 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E025 | chr12 | 110702308 | 110702433 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.869 | 0.7173 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E026 | chr12 | 110704874 | 110704950 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J027 | chr12 | 110628176 | 110650167 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J028 | chr12 | 110649475 | 110650167 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.057 | 0.8443 | NA | NA | NA | 3.9 | 1.0 | 1.0 | 1.0 | 2.9 | 2.9 |
| J029 | chr12 | 110650280 | 110651216 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0493 | 0.2433 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 2.0 | 2.0 | 6.8 |
| J030 | chr12 | 110651448 | 110655233 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.136 | 0.9878 | NA | NA | NA | 2.0 | 0.0 | 4.0 | 2.0 | 1.0 | 4.8 |
| J031 | chr12 | 110655338 | 110661163 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.206 | 0.8799 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 0.0 | 0.0 | 3.9 |
| J032 | chr12 | 110655338 | 110661279 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J033 | chr12 | 110661448 | 110683224 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0473 | 0.3174 | NA | NA | NA | 3.0 | 2.1 | 3.0 | 0.0 | 2.0 | 3.9 |
| J034 | chr12 | 110661448 | 110688624 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J035 | chr12 | 110683264 | 110687974 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J036 | chr12 | 110683264 | 110688624 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0695 | 0.7141 | NA | NA | NA | 1.0 | 2.1 | 1.0 | 0.0 | 2.0 | 1.9 |
| J037 | chr12 | 110688708 | 110689079 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J038 | chr12 | 110688708 | 110689311 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J039 | chr12 | 110688708 | 110689725 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J040 | chr12 | 110688708 | 110702308 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr12 | 110702433 | 110704874 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N042 | chr12 | 110626492 | 110628766 | TRUE | OK | 76.6 | 2.52 | 0.6118 | 0.8917 | -0.513 | -0.252 | 88.7 | 57.3 | 77.6 | 77.4 | 84.2 | 74.4 |
| N043 | chr12 | 110628918 | 110632471 | TRUE | OK | 72.5 | 1.18 | 0.8176 | 0.9545 | -0.704 | -0.346 | 88.7 | 60.5 | 60.4 | 74.5 | 79.3 | 71.5 |
| N044 | chr12 | 110632559 | 110634669 | TRUE | OK | 48.2 | 0.0347 | 0.3432 | 0.8049 | -0.429 | -0.214 | 47.3 | 48.0 | 40.3 | 47.7 | 55.8 | 50.3 |
| N045 | chr12 | 110634779 | 110636480 | TRUE | OK | 59.7 | 0.243 | 0.3253 | 0.7996 | -0.714 | -0.355 | 46.3 | 58.4 | 63.5 | 61.6 | 62.7 | 65.7 |
| N046 | chr12 | 110636501 | 110640382 | TRUE | OK | 75.2 | 2.09 | 0.5441 | 0.87 | -0.971 | -0.474 | 71.0 | 65.7 | 78.6 | 79.4 | 77.4 | 79.3 |
| N047 | chr12 | 110640517 | 110641023 | TRUE | OK | 77.2 | 2.12 | 0.4663 | 0.8448 | -1.528 | -0.745 | 80.9 | 67.8 | 79.6 | 75.5 | 84.2 | 75.4 |
| N048 | chr12 | 110641149 | 110641541 | TRUE | OK | 93.6 | 2 | 0.5279 | 0.8649 | -24.331 | -4.067 | 92.7 | 82.4 | 92.7 | 91.3 | 103.8 | 98.6 |
| N049 | chr12 | 110641627 | 110642248 | TRUE | OK | 56.3 | 0.15 | 0.4776 | 0.8487 | -0.541 | -0.269 | 52.3 | 49.0 | 56.4 | 66.5 | 57.8 | 56.1 |
| N050 | chr12 | 110641627 | 110644972 | TRUE | OK | 14.3 | 0.0188 | 0.008791 | 0.3742 | -1.064 | -0.532 | 16.8 | 16.7 | 17.1 | 5.0 | 12.7 | 17.4 |
| N051 | chr12 | 110642389 | 110644966 | TRUE | OK | 40.4 | 0.0433 | 0.001751 | 0.1782 | -1.412 | -0.704 | 37.5 | 49.0 | 48.3 | 41.7 | 33.3 | 32.9 |
| N052 | chr12 | 110645129 | 110647210 | TRUE | OK | 58.3 | 0.0519 | 2.307e-05 | 0.01061 | -2.186 | -1.084 | 62.1 | 63.6 | 58.4 | 53.6 | 55.8 | 56.1 |
| N053 | chr12 | 110647336 | 110647748 | TRUE | OK | 66.2 | 0.935 | 0.02486 | 0.5244 | -3.530 | -1.730 | 57.2 | 86.5 | 68.5 | 53.6 | 72.5 | 59.0 |
| N054 | chr12 | 110647893 | 110649042 | TRUE | OK | 48.1 | 0.0273 | 0.9907 | 0.9978 | -0.040 | -0.020 | 42.4 | 54.2 | 31.2 | 54.6 | 48.0 | 58.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000122986.13 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |