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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr5 | 172834250 | 172834318 | TRUE | OK | 134.4 | 0.552 | 0.3691 | 0.8132 | -0.595 | -0.298 | 194.2 | 111.6 | 164.2 | 176.7 | 152.8 | 6.8 |
E002 | chr5 | 172834318 | 172834334 | TRUE | OK | 222.0 | 0.107 | 0.2362 | 0.7712 | -0.464 | -0.232 | 285.0 | 183.5 | 278.0 | 279.0 | 245.8 | 60.9 |
E003 | chr5 | 172834334 | 172834384 | TRUE | OK | 577.9 | 0.0246 | 0.5418 | 0.8695 | -0.173 | -0.086 | 716.8 | 407.7 | 644.6 | 674.1 | 608.1 | 415.7 |
E004 | chr5 | 172834384 | 172834410 | TRUE | OK | 710.9 | 0.0202 | 0.788 | 0.9464 | -0.089 | -0.045 | 864.7 | 484.9 | 766.5 | 833.9 | 732.5 | 583.0 |
E005 | chr5 | 172834410 | 172834433 | TRUE | OK | 824.4 | 0.0169 | 0.9935 | 0.9983 | -0.029 | -0.015 | 967.3 | 557.9 | 879.3 | 964.0 | 840.2 | 737.7 |
E006 | chr5 | 172888698 | 172888760 | TRUE | OK | 1312.1 | 0.0157 | 0.8119 | 0.9531 | 0.016 | 0.008 | 1517.5 | 872.8 | 1378.9 | 1468.3 | 1358.3 | 1277.2 |
E007 | chr5 | 172897001 | 172897074 | TRUE | OK | 1707.6 | 0.00883 | 0.801 | 0.9501 | 0.019 | 0.010 | 1881.3 | 1245.0 | 1773.7 | 1828.7 | 1763.7 | 1752.9 |
E008 | chr5 | 172897835 | 172898585 | TRUE | OK | 37.8 | 0.00552 | 0.9943 | 0.9985 | -0.002 | -0.001 | 34.5 | 34.4 | 40.3 | 38.7 | 45.0 | 33.8 |
E009 | chr5 | 172905216 | 172905239 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0891 | 0.7546 | NA | NA | NA | 2.0 | 1.0 | 2.0 | 0.0 | 2.9 | 3.9 |
E010 | chr5 | 172905239 | 172905474 | TRUE | OK | 28.7 | 0.00867 | 0.2701 | 0.7823 | 0.302 | 0.151 | 24.7 | 22.9 | 26.2 | 41.7 | 31.3 | 25.1 |
E011 | chr5 | 172906059 | 172906180 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.4 | 0.0621 | 0.002753 | NA | NA | NA | 5.9 | 8.3 | 3.0 | 1.0 | 0.0 | 1.9 |
E012 | chr5 | 172909666 | 172909761 | TRUE | OK | 2073.3 | 0.00921 | 0.4921 | 0.8532 | 0.090 | 0.045 | 2244.2 | 1478.6 | 2093.0 | 2243.7 | 2178.9 | 2201.5 |
E013 | chr5 | 172914564 | 172914713 | TRUE | OK | 10.4 | 0.0507 | 0.9098 | 0.9786 | -0.014 | -0.007 | 11.8 | 7.3 | 11.1 | 7.9 | 18.6 | 5.8 |
E014 | chr5 | 172914713 | 172914838 | TRUE | OK | 2510.4 | 0.013 | 0.2425 | 0.773 | 0.195 | 0.098 | 2704.6 | 1654.8 | 2453.6 | 2750.0 | 2805.6 | 2693.6 |
E015 | chr5 | 172914838 | 172915517 | TRUE | OK | 68.2 | 0.0153 | 0.7834 | 0.9453 | 0.057 | 0.029 | 58.2 | 50.1 | 84.6 | 59.6 | 73.4 | 83.1 |
E016 | chr5 | 172915517 | 172915690 | TRUE | OK | 47.9 | 0.0356 | 0.1715 | 0.7447 | 0.455 | 0.227 | 33.5 | 24.0 | 58.4 | 53.6 | 46.0 | 71.5 |
E017 | chr5 | 172915690 | 172918335 | TRUE | OK | 73.0 | 0.0102 | 4.338e-09 | 7.83e-06 | 1.319 | 0.660 | 47.3 | 25.0 | 46.3 | 104.2 | 96.9 | 118.0 |
E018 | chr5 | 172920363 | 172920484 | TRUE | OK | 23.8 | 0.0136 | 0.001357 | 0.1562 | 1.033 | 0.517 | 15.8 | 12.5 | 16.1 | 39.7 | 36.2 | 22.2 |
E019 | chr5 | 172920484 | 172920571 | TRUE | OK | 17.3 | 0.0149 | 0.08102 | 0.6783 | 0.606 | 0.303 | 10.8 | 8.3 | 20.1 | 19.9 | 24.5 | 20.3 |
E020 | chr5 | 172921526 | 172921626 | TRUE | OK | 25.3 | 0.0123 | 0.04946 | 0.624 | 0.599 | 0.299 | 18.7 | 18.8 | 20.1 | 32.8 | 22.5 | 38.7 |
E021 | chr5 | 172922144 | 172922468 | TRUE | OK | 34.3 | 0.0288 | 0.9082 | 0.9782 | -0.004 | -0.002 | 30.6 | 35.5 | 33.2 | 22.8 | 32.3 | 51.2 |
E022 | chr5 | 172924004 | 172924024 | TRUE | OK | 1729.5 | 0.0197 | 0.1978 | 0.7567 | 0.257 | 0.129 | 1899.1 | 1011.4 | 1668.0 | 1956.8 | 1920.4 | 1921.1 |
E023 | chr5 | 172924024 | 172924061 | TRUE | OK | 1868.2 | 0.0179 | 0.197 | 0.7564 | 0.249 | 0.124 | 2025.3 | 1120.9 | 1818.0 | 2122.6 | 2055.5 | 2067.1 |
E024 | chr5 | 172924061 | 172924080 | TRUE | OK | 1738.7 | 0.019 | 0.198 | 0.7568 | 0.254 | 0.127 | 1888.2 | 1025.0 | 1695.2 | 1974.7 | 1905.7 | 1943.3 |
E025 | chr5 | 172924080 | 172924102 | TRUE | OK | 1658.3 | 0.0191 | 0.187 | 0.7518 | 0.262 | 0.131 | 1818.2 | 976.0 | 1587.4 | 1868.4 | 1819.5 | 1880.5 |
E026 | chr5 | 172924102 | 172924109 | TRUE | OK | 1610.0 | 0.0177 | 0.1886 | 0.7528 | 0.253 | 0.126 | 1766.9 | 964.5 | 1535.0 | 1808.9 | 1779.4 | 1805.1 |
E027 | chr5 | 172926508 | 172926563 | TRUE | OK | 2049.3 | 0.0132 | 0.3371 | 0.8031 | 0.155 | 0.078 | 2257.0 | 1357.6 | 2011.4 | 2279.4 | 2203.4 | 2187.0 |
E028 | chr5 | 172926563 | 172926569 | TRUE | OK | 1526.0 | 0.0103 | 0.6264 | 0.8966 | 0.061 | 0.031 | 1702.8 | 1085.5 | 1530.0 | 1688.7 | 1533.6 | 1615.6 |
E029 | chr5 | 172926711 | 172927099 | TRUE | OK | 84.5 | 0.00588 | 2.861e-05 | 0.01229 | 0.763 | 0.382 | 69.0 | 42.8 | 67.5 | 100.3 | 111.6 | 116.0 |
E030 | chr5 | 172931092 | 172931207 | TRUE | OK | 13.1 | 0.0256 | 0.3303 | 0.8011 | 0.403 | 0.201 | 9.9 | 6.3 | 16.1 | 18.9 | 10.8 | 16.4 |
E031 | chr5 | 172932435 | 172932478 | TRUE | OK | 1752.8 | 0.00708 | 0.5878 | 0.884 | 0.061 | 0.031 | 1896.1 | 1302.4 | 1762.6 | 1914.1 | 1810.7 | 1831.2 |
E032 | chr5 | 172932478 | 172932511 | TRUE | OK | 1663.4 | 0.00427 | 0.5414 | 0.8693 | 0.059 | 0.029 | 1744.2 | 1297.1 | 1670.0 | 1789.0 | 1726.5 | 1753.8 |
E033 | chr5 | 172932511 | 172932536 | TRUE | OK | 1540.6 | 0.00337 | 0.5465 | 0.8708 | 0.053 | 0.026 | 1602.3 | 1221.0 | 1548.1 | 1628.2 | 1629.5 | 1614.6 |
E034 | chr5 | 172932536 | 172933661 | TRUE | OK | 84.9 | 0.0111 | 0.004574 | 0.2841 | 0.613 | 0.306 | 68.0 | 45.9 | 78.6 | 90.3 | 108.7 | 118.0 |
E035 | chr5 | 172933661 | 172935187 | TRUE | OK | 113.8 | 0.0233 | 0.02807 | 0.5431 | 0.603 | 0.301 | 80.9 | 61.5 | 116.8 | 138.0 | 176.3 | 109.3 |
E036 | chr5 | 172935187 | 172935310 | TRUE | OK | 2472.9 | 0.00702 | 0.3698 | 0.8134 | 0.112 | 0.056 | 2598.1 | 1823.7 | 2472.7 | 2655.7 | 2610.8 | 2676.2 |
E037 | chr5 | 172935310 | 172938007 | TRUE | OK | 76.9 | 0.0199 | 0.9995 | 0.9999 | -0.012 | -0.006 | 52.3 | 78.2 | 92.7 | 89.4 | 65.6 | 83.1 |
E038 | chr5 | 172950708 | 172952680 | TRUE | OK | 12832.1 | 0.0122 | 0.2887 | 0.7881 | -0.177 | -0.088 | 12577.5 | 12779.6 | 12391.9 | 13159.4 | 13148.8 | 12935.3 |
E039 | chr5 | 172952680 | 172952683 | TRUE | OK | 17.0 | 0.0131 | 0.1078 | 0.7053 | -0.554 | -0.277 | 18.7 | 25.0 | 15.1 | 14.9 | 16.6 | 11.6 |
J040 | chr5 | 172834433 | 172888698 | TRUE | OK | 781.0 | 0.0182 | 0.9727 | 0.9935 | -0.025 | -0.013 | 922.9 | 516.1 | 836.0 | 905.4 | 788.3 | 717.4 |
J041 | chr5 | 172888760 | 172897001 | TRUE | OK | 1103.7 | 0.0149 | 0.6821 | 0.9143 | 0.051 | 0.026 | 1263.1 | 732.0 | 1137.2 | 1217.2 | 1101.7 | 1170.8 |
J042 | chr5 | 172897074 | 172897835 | TRUE | OK | 12.6 | 0.00956 | 0.1469 | 0.7333 | -0.537 | -0.268 | 12.8 | 14.6 | 16.1 | 6.9 | 12.7 | 12.6 |
J043 | chr5 | 172897074 | 172909666 | TRUE | OK | 1357.1 | 0.00689 | 0.623 | 0.8955 | 0.053 | 0.026 | 1479.0 | 1004.1 | 1366.8 | 1444.5 | 1410.2 | 1437.7 |
J044 | chr5 | 172897074 | 172914713 | TRUE | OK | 22.0 | 0.0189 | 0.8049 | 0.9512 | 0.088 | 0.044 | 25.6 | 15.6 | 20.1 | 32.8 | 16.6 | 21.3 |
J045 | chr5 | 172905474 | 172909666 | TRUE | OK | 24.2 | 0.00918 | 0.2103 | 0.7614 | 0.367 | 0.183 | 19.7 | 18.8 | 22.2 | 36.7 | 27.4 | 20.3 |
J046 | chr5 | 172906180 | 172909666 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0638 | 0.08464 | NA | NA | NA | 3.0 | 2.1 | 2.0 | 0.0 | 0.0 | 1.9 |
J047 | chr5 | 172909761 | 172914564 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.465 | 0.6594 | NA | NA | NA | 0.0 | 1.0 | 3.0 | 0.0 | 2.9 | 0.0 |
J048 | chr5 | 172909761 | 172914713 | TRUE | OK | 1468.5 | 0.0063 | 0.2611 | 0.7793 | 0.138 | 0.069 | 1534.2 | 1066.7 | 1447.4 | 1558.7 | 1595.2 | 1608.8 |
J049 | chr5 | 172914838 | 172915517 | TRUE | OK | 22.7 | 0.013 | 0.8895 | 0.9735 | 0.036 | 0.018 | 19.7 | 15.6 | 29.2 | 22.8 | 19.6 | 29.0 |
J050 | chr5 | 172914838 | 172920363 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.1 | 0.0628 | 0.05537 | NA | NA | NA | 2.0 | 2.1 | 2.0 | 6.9 | 9.8 | 1.9 |
J051 | chr5 | 172914838 | 172924004 | TRUE | OK | 1470.7 | 0.0187 | 0.1971 | 0.7564 | 0.254 | 0.127 | 1601.3 | 868.6 | 1423.2 | 1660.9 | 1641.3 | 1629.1 |
J052 | chr5 | 172915690 | 172924004 | TRUE | OK | 18.6 | 0.105 | 0.1902 | 0.754 | 0.666 | 0.333 | 13.8 | 3.1 | 24.2 | 24.8 | 16.6 | 29.0 |
J053 | chr5 | 172920484 | 172921526 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.08 | 0.628 | NA | NA | NA | 1.0 | 2.1 | 1.0 | 2.0 | 0.0 | 1.0 |
J054 | chr5 | 172921626 | 172924004 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.173 | 0.5337 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 1.0 |
J055 | chr5 | 172922468 | 172924004 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J056 | chr5 | 172924109 | 172926508 | TRUE | OK | 1533.2 | 0.0187 | 0.2004 | 0.7582 | 0.251 | 0.126 | 1690.0 | 913.4 | 1459.5 | 1741.4 | 1680.4 | 1714.2 |
J057 | chr5 | 172926569 | 172926711 | TRUE | OK | 20.5 | 0.0116 | 0.4758 | 0.8481 | 0.222 | 0.111 | 20.7 | 11.5 | 22.2 | 20.8 | 29.4 | 18.4 |
J058 | chr5 | 172926569 | 172932435 | TRUE | OK | 1410.2 | 0.0097 | 0.7551 | 0.9368 | 0.032 | 0.016 | 1576.6 | 1020.8 | 1432.3 | 1555.7 | 1392.5 | 1483.1 |
J059 | chr5 | 172931207 | 172932435 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.6073 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J060 | chr5 | 172932536 | 172935187 | TRUE | OK | 1350.9 | 0.00235 | 0.5281 | 0.8649 | 0.049 | 0.024 | 1394.2 | 1089.6 | 1353.7 | 1409.8 | 1433.7 | 1424.2 |
J061 | chr5 | 172935310 | 172950708 | TRUE | OK | 1457.7 | 0.0133 | 0.2644 | 0.7806 | 0.187 | 0.094 | 1583.5 | 946.8 | 1419.2 | 1619.2 | 1539.4 | 1637.8 |
N062 | chr5 | 172834433 | 172856090 | TRUE | OK | 15.9 | 0.00837 | 0.3158 | 0.7962 | 0.333 | 0.166 | 16.8 | 9.4 | 14.1 | 17.9 | 22.5 | 14.5 |
N063 | chr5 | 172856311 | 172888698 | TRUE | OK | 28.6 | 0.032 | 0.8278 | 0.9572 | -0.132 | -0.066 | 45.4 | 20.9 | 20.1 | 29.8 | 24.5 | 30.9 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000113719.16 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |