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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr2 | 101002228 | 101002282 | TRUE | OK | 202.1 | 0.00334 | 0.6624 | 0.9083 | -0.044 | -0.022 | 199.2 | 238.8 | 193.4 | 184.7 | 185.1 | 211.7 |
E002 | chr2 | 101002282 | 101002288 | TRUE | OK | 484.4 | 0.00497 | 0.8226 | 0.9559 | -0.014 | -0.007 | 491.0 | 558.9 | 447.2 | 491.4 | 421.1 | 497.0 |
E003 | chr2 | 101002288 | 101002292 | TRUE | OK | 693.6 | 0.00412 | 0.6923 | 0.9175 | -0.034 | -0.017 | 706.0 | 817.5 | 633.5 | 702.9 | 614.0 | 687.4 |
E004 | chr2 | 101002292 | 101002310 | TRUE | OK | 4660.8 | 0.00558 | 0.0348 | 0.5732 | 0.284 | 0.142 | 4240.8 | 4858.0 | 4057.1 | 5011.6 | 4599.7 | 5197.7 |
E005 | chr2 | 101002310 | 101002315 | TRUE | OK | 8315.9 | 0.00627 | 0.04223 | 0.6013 | 0.291 | 0.145 | 7585.4 | 8776.6 | 7344.7 | 8939.1 | 8173.1 | 9076.7 |
E006 | chr2 | 101002315 | 101002690 | TRUE | OK | 128.9 | 0.0058 | 0.06048 | 0.6489 | -0.295 | -0.147 | 129.2 | 160.6 | 146.0 | 102.3 | 105.8 | 129.6 |
E007 | chr2 | 101002690 | 101002701 | TRUE | OK | 107.0 | 0.00318 | 0.4583 | 0.8423 | -0.101 | -0.050 | 103.5 | 129.3 | 107.8 | 94.3 | 109.7 | 97.7 |
E008 | chr2 | 101002701 | 101002738 | TRUE | OK | 18288.9 | 0.00946 | 0.06794 | 0.6595 | 0.333 | 0.166 | 16806.5 | 20108.8 | 16582.9 | 19354.4 | 18022.7 | 18858.1 |
E009 | chr2 | 101002738 | 101002808 | TRUE | OK | 24751.7 | 0.0105 | 0.07706 | 0.6739 | 0.347 | 0.172 | 22501.7 | 28931.3 | 22605.1 | 25383.6 | 24156.9 | 24931.8 |
E010 | chr2 | 101004157 | 101004283 | TRUE | OK | 30498.5 | 0.00283 | 0.0665 | 0.6569 | 0.178 | 0.086 | 27141.9 | 38207.3 | 28125.7 | 30451.8 | 29470.4 | 29593.9 |
E011 | chr2 | 101004283 | 101004361 | TRUE | OK | 375.2 | 0.00671 | 0.2648 | 0.7807 | -0.164 | -0.082 | 338.2 | 521.4 | 357.6 | 392.2 | 364.3 | 277.5 |
E012 | chr2 | 101004361 | 101004604 | TRUE | OK | 21.8 | 0.00748 | 0.5419 | 0.8695 | -0.173 | -0.087 | 19.7 | 29.2 | 22.2 | 18.9 | 18.6 | 22.2 |
E013 | chr2 | 101004604 | 101005958 | TRUE | OK | 564.1 | 0.0283 | 0.07045 | 0.6637 | -0.458 | -0.229 | 596.5 | 817.5 | 581.2 | 519.2 | 587.6 | 282.3 |
E014 | chr2 | 101005958 | 101006071 | TRUE | OK | 18561.8 | 0.00412 | 0.1564 | 0.7375 | -0.169 | -0.084 | 16779.9 | 24867.8 | 16821.6 | 17916.9 | 17025.8 | 17959.0 |
E015 | chr2 | 101006071 | 101006349 | TRUE | OK | 336.8 | 0.00297 | 0.004072 | 0.2696 | -0.321 | -0.161 | 307.6 | 483.8 | 355.5 | 317.7 | 299.7 | 256.2 |
E016 | chr2 | 101006349 | 101006367 | TRUE | OK | 6033.8 | 0.0035 | 0.2103 | 0.7614 | -0.146 | -0.073 | 5382.6 | 8560.7 | 5358.4 | 5700.6 | 5462.4 | 5738.2 |
E017 | chr2 | 101006367 | 101006418 | TRUE | OK | 4806.5 | 0.00317 | 0.3293 | 0.8008 | -0.114 | -0.057 | 4242.8 | 6789.1 | 4235.4 | 4635.3 | 4416.6 | 4520.0 |
E018 | chr2 | 101006418 | 101006419 | TRUE | OK | 392.9 | 0.00165 | 0.5049 | 0.8573 | 0.063 | 0.031 | 355.9 | 489.0 | 339.4 | 376.3 | 394.6 | 402.2 |
E019 | chr2 | 101006419 | 101006423 | TRUE | OK | 167.4 | 0.00259 | 0.3604 | 0.8109 | -0.104 | -0.052 | 168.6 | 202.3 | 162.2 | 161.8 | 146.9 | 162.4 |
E020 | chr2 | 101006423 | 101007267 | TRUE | OK | 380.4 | 0.00352 | 0.4019 | 0.8246 | 0.110 | 0.055 | 370.7 | 422.3 | 334.4 | 410.0 | 365.3 | 380.0 |
E021 | chr2 | 101017858 | 101017888 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.3 | 0.0259 | 0.09419 | NA | NA | NA | 5.9 | 5.2 | 7.1 | 13.9 | 5.9 | 11.6 |
E022 | chr2 | 101017888 | 101018289 | TRUE | OK | 17.6 | 0.0117 | 0.1778 | 0.748 | 0.465 | 0.233 | 13.8 | 16.7 | 15.1 | 24.8 | 13.7 | 21.3 |
E023 | chr2 | 101018289 | 101018306 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.3 | 0.0452 | 0.3902 | NA | NA | NA | 3.9 | 5.2 | 4.0 | 10.9 | 3.9 | 3.9 |
E024 | chr2 | 101018997 | 101019728 | TRUE | OK | 100.7 | 0.00319 | 0.5097 | 0.8591 | 0.106 | 0.053 | 95.6 | 116.8 | 86.6 | 94.3 | 104.8 | 106.4 |
E025 | chr2 | 101023624 | 101024032 | TRUE | OK | 19.2 | 0.0586 | 0.2472 | 0.7747 | 0.581 | 0.291 | 12.8 | 10.4 | 24.2 | 23.8 | 14.7 | 29.0 |
J026 | chr2 | 101002315 | 101002701 | TRUE | OK | 8312.9 | 0.00609 | 0.03875 | 0.5888 | 0.292 | 0.146 | 7584.4 | 8772.4 | 7336.6 | 8938.1 | 8170.1 | 9075.7 |
J027 | chr2 | 101002808 | 101004157 | TRUE | OK | 24503.5 | 0.0101 | 0.0769 | 0.6737 | 0.339 | 0.168 | 22274.9 | 28642.5 | 22358.3 | 25134.5 | 23897.4 | 24713.3 |
J028 | chr2 | 101004283 | 101005958 | TRUE | OK | 16896.1 | 0.00402 | 0.2752 | 0.7833 | -0.132 | -0.066 | 15174.7 | 22612.4 | 15277.6 | 16235.1 | 15453.0 | 16623.8 |
J029 | chr2 | 101004361 | 101005958 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0489 | 0.8045 | NA | NA | NA | 1.0 | 3.1 | 3.0 | 5.0 | 2.0 | 1.0 |
J030 | chr2 | 101006071 | 101006349 | TRUE | OK | 5930.1 | 0.00341 | 0.2254 | 0.7671 | -0.141 | -0.071 | 5264.3 | 8427.3 | 5257.7 | 5595.4 | 5370.4 | 5665.7 |
J031 | chr2 | 101006071 | 101017858 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0399 | 0.485 | NA | NA | NA | 3.0 | 2.1 | 4.0 | 2.0 | 2.9 | 1.0 |
J032 | chr2 | 101006071 | 101017888 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0773 | 0.193 | NA | NA | NA | 3.9 | 4.2 | 0.0 | 1.0 | 1.0 | 1.0 |
J033 | chr2 | 101006071 | 101018997 | TRUE | OK | 24.1 | 0.00595 | 0.7861 | 0.946 | 0.086 | 0.043 | 24.7 | 22.9 | 24.2 | 26.8 | 23.5 | 22.2 |
J034 | chr2 | 101006071 | 101023624 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.6 | 0.152 | 0.8868 | NA | NA | NA | 3.9 | 2.1 | 5.0 | 1.0 | 2.0 | 7.7 |
N035 | chr2 | 101002554 | 101002701 | TRUE | OK | 17.5 | 0.0124 | 0.4868 | 0.8517 | -0.223 | -0.111 | 16.8 | 22.9 | 18.1 | 16.9 | 8.8 | 21.3 |
N036 | chr2 | 101004308 | 101005958 | TRUE | OK | 77.1 | 0.00273 | 0.4466 | 0.8384 | -0.119 | -0.059 | 66.1 | 103.2 | 77.6 | 82.4 | 61.7 | 71.5 |
N037 | chr2 | 101008273 | 101010928 | TRUE | OK | 190.8 | 0.0152 | 0.0002663 | 0.0603 | 0.832 | 0.416 | 164.7 | 131.4 | 129.9 | 248.2 | 228.2 | 242.7 |
N038 | chr2 | 101011026 | 101011450 | TRUE | OK | 198.1 | 0.00235 | 4.318e-09 | 7.83e-06 | 0.702 | 0.351 | 151.8 | 166.8 | 149.1 | 243.2 | 235.0 | 242.7 |
N039 | chr2 | 101011540 | 101021680 | TRUE | OK | 178.7 | 0.00885 | 0.0003822 | 0.07513 | 0.662 | 0.331 | 144.9 | 137.6 | 146.0 | 216.4 | 203.7 | 223.3 |
N040 | chr2 | 101021746 | 101022280 | TRUE | OK | 196.9 | 0.0246 | 0.005378 | 0.3049 | 0.784 | 0.392 | 171.6 | 122.0 | 155.1 | 250.2 | 227.2 | 255.2 |
N041 | chr2 | 101022521 | 101027382 | TRUE | OK | 166.2 | 0.0217 | 0.0008844 | 0.1232 | 0.894 | 0.447 | 144.0 | 104.3 | 112.8 | 202.5 | 201.7 | 232.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000071082.11 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |