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Normalized Counts Table (ENSG00000111684.11)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr12	6976184	6976185	TRUE	OK	64.7	0.00678	0.1151	0.7123	-0.328	-0.164	88.7	54.2	75.5	60.6	51.9	57.0
E002	chr12	6976185	6976805	TRUE	OK	911.7	0.0121	0.4646	0.8443	-0.136	-0.068	924.9	1071.9	880.3	824.0	897.0	872.1
E003	chr12	6976805	6976891	TRUE	OK	450.5	0.00444	0.7638	0.9395	-0.035	-0.018	458.5	491.1	439.1	425.9	430.9	457.3
E004	chr12	6977133	6977262	TRUE	OK	516.9	0.00396	0.4654	0.8445	0.089	0.045	529.5	494.2	511.7	572.8	483.8	509.5
E005	chr12	6977366	6977525	TRUE	OK	610.9	0.00494	0.2105	0.7615	0.160	0.080	625.1	530.7	622.5	698.9	588.5	599.4
E006	chr12	6977525	6977597	TRUE	OK	74.5	0.0122	0.02693	0.537	-0.529	-0.265	73.0	76.1	117.8	62.5	55.8	61.9
E007	chr12	6977597	6977646	TRUE	OK	427.3	0.00203	0.1696	0.7442	0.131	0.065	435.8	378.5	437.1	463.6	420.1	428.3
E008	chr12	6977646	6977698	TRUE	OK	421.5	0.00221	0.5136	0.8603	0.062	0.031	457.5	373.3	430.1	443.8	406.4	417.7
E009	chr12	6977698	6977745	TRUE	OK	385.6	0.0028	0.7314	0.9298	0.034	0.017	427.9	335.8	399.9	404.1	357.4	388.7
E010	chr12	6977745	6977839	TRUE	OK	82.5	0.00389	0.006546	0.331	-0.459	-0.229	96.6	82.4	110.8	60.6	66.6	78.3
E011	chr12	6977839	6978040	TRUE	OK	91.3	0.00915	0.198	0.7568	-0.257	-0.129	94.7	91.8	115.8	65.5	99.9	80.2
E012	chr12	6978040	6978340	TRUE	OK	102.2	0.0075	0.06262	0.6515	-0.354	-0.177	125.2	91.8	130.9	82.4	103.8	79.3
E013	chr12	6978340	6978420	TRUE	OK	413.4	0.00226	0.4108	0.8273	0.079	0.039	450.6	356.6	423.0	432.9	398.6	418.6
E014	chr12	6978420	6978507	TRUE	OK	450.5	0.00458	0.555	0.8732	0.077	0.038	489.1	390.0	463.3	441.8	400.5	518.2
E015	chr12	6978602	6978689	TRUE	OK	455.0	0.00339	0.3891	0.8199	0.096	0.048	461.5	387.9	498.6	451.7	419.1	511.5
E016	chr12	6978689	6979270	TRUE	OK	185.4	0.00226	1.604e-07	0.0001822	-0.629	-0.314	217.9	217.9	242.7	149.9	137.1	147.0
E017	chr12	6979470	6979579	TRUE	OK	487.8	0.00687	0.2135	0.7627	0.187	0.093	496.9	393.1	515.7	504.3	433.8	583.0
E018	chr12	6979594	6979967	TRUE	OK	94.2	0.027	0.01169	0.4126	-0.767	-0.384	94.7	155.4	108.8	57.6	60.7	88.0
E019	chr12	6980706	6981003	TRUE	OK	23.6	0.0149	0.8859	0.9726	-0.040	-0.020	18.7	26.1	28.2	15.9	28.4	24.2
E020	chr12	6981003	6981148	TRUE	OK	532.7	0.00498	0.009278	0.3824	0.328	0.164	549.2	388.9	531.8	561.9	554.3	610.1
E021	chr12	6981148	6981157	TRUE	OK	323.8	0.00522	0.04892	0.6226	0.262	0.131	351.0	237.7	318.3	327.6	350.6	357.7
E022	chr12	6981157	6981182	TRUE	OK	342.4	0.00425	0.04065	0.5962	0.252	0.126	369.8	258.6	334.4	349.5	370.2	372.2
E023	chr12	6981293	6981541	TRUE	OK	28.6	0.0105	0.7555	0.937	0.087	0.043	35.5	26.1	23.2	21.8	33.3	31.9
E024	chr12	6981541	6981559	TRUE	OK	14.1	0.0118	0.9246	0.9823	0.036	0.018	15.8	15.6	11.1	12.9	12.7	16.4
E025	chr12	6981559	6981594	TRUE	OK	12.6	0.0121	0.4262	0.8318	-0.304	-0.152	16.8	13.6	12.1	9.9	11.8	11.6
E026	chr12	6981594	6981632	TRUE	OK	363.0	0.00514	0.08241	0.6803	0.226	0.113	402.3	277.4	350.5	375.3	392.7	380.0
E027	chr12	6981632	6981808	TRUE	OK	13.8	0.0409	0.6552	0.9061	-0.171	-0.086	12.8	14.6	17.1	20.8	6.9	10.6
E028	chr12	6981808	6981810	FALSE	LOW_COUNTS_INDEP_FILTER	8.1	0.021	0.8958	NA	NA	NA	8.9	6.3	9.1	11.9	5.9	6.8
E029	chr12	6981810	6981858	TRUE	OK	336.7	0.00424	0.03843	0.5876	0.255	0.127	357.9	251.3	336.4	353.4	362.3	358.7
E030	chr12	6981858	6981904	TRUE	OK	371.4	0.0058	0.01668	0.4649	0.328	0.164	397.4	264.9	356.6	401.1	389.8	418.6
E031	chr12	6982675	6982782	TRUE	OK	516.4	0.0103	0.03088	0.5558	0.361	0.180	552.2	342.0	514.7	557.9	553.3	578.2
E032	chr12	6982782	6982783	TRUE	OK	12.5	0.0515	0.1583	0.7383	0.782	0.391	8.9	8.3	11.1	7.9	25.5	13.5
E033	chr12	6983431	6983465	TRUE	OK	426.0	0.0211	0.1427	0.7314	0.330	0.165	451.6	262.8	456.3	451.7	444.6	489.2
E034	chr12	6983465	6983539	TRUE	OK	539.6	0.0189	0.2446	0.7737	0.235	0.117	592.6	336.8	604.3	568.9	528.8	606.2
E035	chr12	7001427	7001486	FALSE	LOW_COUNTS_INDEP_FILTER	4.3	0.034	0.7459	NA	NA	NA	5.9	2.1	6.0	3.0	3.9	4.8
E036	chr12	7018273	7018474	TRUE	OK	474.3	0.0233	0.4598	0.8429	0.162	0.081	529.5	312.8	534.8	485.5	435.8	547.2
E037	chr12	7018474	7018476	TRUE	OK	27.2	0.0121	0.8793	0.9709	-0.034	-0.017	25.6	30.2	28.2	27.8	17.6	33.8
E038	chr12	7018476	7018477	TRUE	OK	27.1	0.013	0.9262	0.9826	-0.017	-0.008	24.7	30.2	28.2	27.8	17.6	33.8
J039	chr12	6976891	6977133	TRUE	OK	265.4	0.00281	0.298	0.7912	0.123	0.061	254.4	272.1	251.8	280.0	256.6	277.5
J040	chr12	6977262	6977366	TRUE	OK	277.7	0.00574	0.3024	0.7921	0.151	0.075	292.8	233.6	280.0	328.6	254.6	276.5
J041	chr12	6977525	6977597	TRUE	OK	330.8	0.00157	0.00429	0.2757	0.270	0.135	318.5	286.7	319.3	373.3	348.6	338.4
J042	chr12	6977525	6978420	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.161	0.2464	NA	NA	NA	0.0	1.0	1.0	4.0	0.0	1.9
J043	chr12	6977745	6978340	TRUE	OK	213.1	0.00702	0.1459	0.733	0.232	0.116	237.6	178.3	185.3	253.2	208.6	215.6
J044	chr12	6978507	6978602	TRUE	OK	270.8	0.00665	0.3797	0.8168	0.147	0.074	276.1	238.8	273.0	250.2	243.8	343.2
J045	chr12	6978689	6979470	TRUE	OK	285.3	0.00804	0.08966	0.6889	0.279	0.139	271.2	211.7	311.2	288.9	269.3	359.7
J046	chr12	6979579	6981003	TRUE	OK	279.6	0.00713	0.01809	0.4766	0.368	0.184	284.0	195.0	275.0	316.7	267.3	339.4
J047	chr12	6979579	6981594	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.466	0.9973	NA	NA	NA	0.0	0.0	4.0	1.0	0.0	1.9
J048	chr12	6979967	6981003	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.259	0.2383	NA	NA	NA	0.0	1.0	1.0	0.0	0.0	0.0
J049	chr12	6981182	6981594	TRUE	OK	286.1	0.00181	0.02241	0.5089	0.227	0.114	301.7	224.2	284.0	294.9	303.6	308.4
J050	chr12	6981182	6981810	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J051	chr12	6981632	6981810	TRUE	OK	261.3	0.00194	0.01269	0.4225	0.259	0.129	277.1	206.5	247.8	274.0	283.0	279.4
J052	chr12	6981904	6982675	TRUE	OK	299.4	0.00791	0.02345	0.5153	0.354	0.177	321.4	200.2	290.1	333.6	316.3	334.5
J053	chr12	6981904	7018273	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.264	1	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	1.0
J054	chr12	6982782	6983431	TRUE	OK	348.8	0.0184	0.06408	0.6536	0.395	0.197	366.8	200.2	367.6	375.3	374.1	409.0
J055	chr12	6983539	7001427	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.611	0.362	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.9
J056	chr12	6983539	7018273	TRUE	OK	441.7	0.0255	0.4682	0.8455	0.161	0.080	496.9	284.7	500.6	454.7	415.2	497.9
J057	chr12	7001486	7018273	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.565	0.5633	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000111684.11
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE