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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr9 | 131576769 | 131576777 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.214 | 0.0413 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 2.9 |
E002 | chr9 | 131576777 | 131579647 | TRUE | OK | 2441.6 | 0.0131 | 0.3342 | 0.8023 | -0.151 | -0.075 | 2303.3 | 2087.5 | 2346.8 | 2788.7 | 2497.2 | 2625.9 |
E003 | chr9 | 131580262 | 131580391 | TRUE | OK | 330.9 | 0.00606 | 0.1191 | 0.7153 | 0.211 | 0.105 | 348.1 | 190.8 | 281.0 | 433.8 | 339.8 | 391.6 |
E004 | chr9 | 131582604 | 131582702 | TRUE | OK | 271.0 | 0.00295 | 0.6774 | 0.9128 | 0.044 | 0.022 | 285.9 | 180.4 | 247.8 | 351.4 | 277.1 | 283.3 |
E005 | chr9 | 131584310 | 131584412 | TRUE | OK | 267.7 | 0.00227 | 0.2868 | 0.7874 | 0.108 | 0.054 | 275.1 | 167.9 | 245.8 | 339.5 | 281.1 | 296.8 |
E006 | chr9 | 131584517 | 131584596 | TRUE | OK | 254.3 | 0.00327 | 0.1362 | 0.7274 | 0.170 | 0.085 | 265.2 | 152.2 | 221.6 | 326.6 | 275.2 | 285.2 |
E007 | chr9 | 131587735 | 131587830 | TRUE | OK | 296.9 | 0.0105 | 0.306 | 0.7933 | 0.162 | 0.081 | 341.2 | 178.3 | 229.6 | 388.2 | 307.5 | 336.5 |
E008 | chr9 | 131587941 | 131588026 | TRUE | OK | 320.2 | 0.00748 | 0.8168 | 0.9543 | 0.010 | 0.005 | 372.7 | 192.9 | 289.1 | 395.1 | 328.1 | 343.2 |
E009 | chr9 | 131588800 | 131588986 | TRUE | OK | 404.5 | 0.00962 | 0.9646 | 0.9918 | -0.041 | -0.021 | 470.3 | 234.6 | 394.8 | 505.3 | 399.5 | 422.5 |
E010 | chr9 | 131589885 | 131589978 | TRUE | OK | 315.7 | 0.00464 | 0.9634 | 0.9915 | -0.026 | -0.013 | 337.2 | 190.8 | 325.3 | 385.2 | 315.3 | 340.3 |
E011 | chr9 | 131592098 | 131592183 | TRUE | OK | 303.7 | 0.00268 | 0.4981 | 0.8551 | 0.061 | 0.031 | 316.5 | 185.6 | 293.1 | 364.4 | 320.2 | 342.3 |
E012 | chr9 | 131596297 | 131596373 | TRUE | OK | 315.2 | 0.00305 | 0.6132 | 0.8923 | 0.054 | 0.027 | 336.2 | 217.9 | 274.0 | 389.2 | 315.3 | 358.7 |
E013 | chr9 | 131598198 | 131598310 | TRUE | OK | 299.8 | 0.00169 | 0.7031 | 0.9207 | 0.037 | 0.018 | 300.7 | 216.9 | 275.0 | 368.3 | 300.6 | 337.4 |
E014 | chr9 | 131602060 | 131602113 | TRUE | OK | 217.1 | 0.00256 | 0.2302 | 0.7693 | 0.138 | 0.069 | 208.0 | 139.7 | 204.5 | 277.0 | 214.5 | 259.1 |
E015 | chr9 | 131602113 | 131602149 | TRUE | OK | 215.1 | 0.00264 | 0.09072 | 0.6895 | 0.191 | 0.095 | 197.2 | 125.1 | 213.5 | 269.0 | 238.0 | 247.5 |
E016 | chr9 | 131603960 | 131604053 | TRUE | OK | 21.8 | 0.00991 | 0.1803 | 0.749 | 0.410 | 0.205 | 15.8 | 11.5 | 22.2 | 34.7 | 21.5 | 25.1 |
E017 | chr9 | 131604930 | 131605188 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.328 | 0.8256 | NA | NA | NA | 5.9 | 0.0 | 1.0 | 3.0 | 2.9 | 0.0 |
E018 | chr9 | 131619050 | 131619209 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.0 | 0.0424 | 0.02958 | NA | NA | NA | 5.9 | 2.1 | 6.0 | 8.9 | 19.6 | 11.6 |
E019 | chr9 | 131621795 | 131621838 | TRUE | OK | 210.3 | 0.00395 | 0.01944 | 0.4868 | 0.298 | 0.149 | 190.3 | 110.5 | 201.4 | 275.0 | 243.8 | 240.7 |
E020 | chr9 | 131621838 | 131621998 | TRUE | OK | 283.2 | 0.00877 | 0.02776 | 0.5412 | 0.344 | 0.172 | 275.1 | 135.6 | 254.8 | 368.3 | 314.3 | 351.0 |
E021 | chr9 | 131625921 | 131625948 | TRUE | OK | 185.0 | 0.0134 | 0.0773 | 0.6742 | 0.325 | 0.162 | 193.3 | 81.3 | 162.2 | 237.3 | 209.6 | 226.2 |
E022 | chr9 | 131625948 | 131626159 | TRUE | OK | 302.4 | 0.0157 | 0.289 | 0.7881 | 0.173 | 0.086 | 325.4 | 140.8 | 294.1 | 378.3 | 325.1 | 351.0 |
E023 | chr9 | 131626159 | 131626422 | TRUE | OK | 329.6 | 0.013 | 0.781 | 0.9448 | 0.003 | 0.002 | 366.8 | 172.0 | 343.5 | 380.2 | 368.2 | 347.1 |
E024 | chr9 | 131627912 | 131628096 | TRUE | OK | 278.1 | 0.0144 | 0.568 | 0.8775 | 0.070 | 0.035 | 314.5 | 139.7 | 272.0 | 337.5 | 275.2 | 329.7 |
E025 | chr9 | 131628548 | 131628672 | TRUE | OK | 259.8 | 0.0164 | 0.3796 | 0.8167 | 0.149 | 0.074 | 286.9 | 125.1 | 246.8 | 326.6 | 251.7 | 322.0 |
E026 | chr9 | 131629101 | 131629254 | TRUE | OK | 321.8 | 0.00798 | 0.176 | 0.7469 | 0.197 | 0.099 | 330.3 | 175.2 | 296.1 | 398.1 | 325.1 | 406.1 |
E027 | chr9 | 131630235 | 131630324 | TRUE | OK | 249.7 | 0.00502 | 0.05314 | 0.6332 | 0.257 | 0.128 | 242.6 | 137.6 | 226.6 | 305.8 | 265.4 | 320.0 |
E028 | chr9 | 131638634 | 131638697 | TRUE | OK | 262.2 | 0.00793 | 0.2023 | 0.7588 | 0.194 | 0.097 | 246.5 | 143.9 | 262.9 | 336.6 | 255.6 | 327.8 |
E029 | chr9 | 131638697 | 131638791 | TRUE | OK | 295.2 | 0.00403 | 0.3246 | 0.7994 | 0.114 | 0.057 | 286.9 | 180.4 | 291.1 | 347.5 | 300.6 | 364.5 |
E030 | chr9 | 131643238 | 131643391 | TRUE | OK | 344.3 | 0.0109 | 0.3393 | 0.8037 | 0.132 | 0.066 | 361.9 | 175.2 | 342.5 | 417.0 | 374.1 | 395.4 |
E031 | chr9 | 131643391 | 131643417 | TRUE | OK | 202.1 | 0.0248 | 0.6124 | 0.892 | 0.054 | 0.027 | 237.6 | 88.6 | 204.5 | 222.4 | 242.9 | 216.6 |
E032 | chr9 | 131650128 | 131650242 | TRUE | OK | 157.8 | 0.0217 | 0.2018 | 0.7585 | 0.259 | 0.130 | 162.7 | 62.6 | 157.1 | 190.6 | 190.0 | 183.7 |
E033 | chr9 | 131650809 | 131650949 | TRUE | OK | 195.2 | 0.0113 | 0.4263 | 0.8318 | -0.183 | -0.092 | 214.0 | 118.9 | 225.6 | 221.4 | 222.3 | 169.2 |
E034 | chr9 | 131709619 | 131709721 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.261 | 0.5943 | NA | NA | NA | 0.0 | 3.1 | 0.0 | 3.0 | 1.0 | 1.9 |
E035 | chr9 | 131737404 | 131737538 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.318 | 0.1932 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.9 |
E036 | chr9 | 131739769 | 131739944 | TRUE | OK | 93.8 | 0.0311 | 0.06824 | 0.6599 | -0.536 | -0.268 | 113.4 | 78.2 | 110.8 | 104.2 | 107.7 | 48.3 |
E037 | chr9 | 131739944 | 131740074 | TRUE | OK | 16.7 | 0.103 | 4.811e-05 | 0.01841 | -2.541 | -1.271 | 34.5 | 25.0 | 23.2 | 10.9 | 6.9 | 0.0 |
J038 | chr9 | 131579647 | 131580262 | TRUE | OK | 224.6 | 0.0126 | 0.1131 | 0.7109 | 0.286 | 0.143 | 240.6 | 109.5 | 189.4 | 291.9 | 229.2 | 287.2 |
J039 | chr9 | 131580391 | 131582604 | TRUE | OK | 180.4 | 0.00248 | 0.4388 | 0.8358 | 0.092 | 0.046 | 186.4 | 119.9 | 160.1 | 241.2 | 183.1 | 191.4 |
J040 | chr9 | 131582702 | 131584310 | TRUE | OK | 175.0 | 0.00172 | 0.6874 | 0.9159 | -0.052 | -0.026 | 190.3 | 117.8 | 169.2 | 215.4 | 176.3 | 180.8 |
J041 | chr9 | 131584412 | 131584517 | TRUE | OK | 189.5 | 0.00133 | 0.05085 | 0.6272 | 0.203 | 0.102 | 184.4 | 116.8 | 168.2 | 241.2 | 208.6 | 217.5 |
J042 | chr9 | 131584596 | 131587735 | TRUE | OK | 162.3 | 0.0088 | 0.1017 | 0.6994 | 0.274 | 0.137 | 179.5 | 89.7 | 121.9 | 211.5 | 176.3 | 195.3 |
J043 | chr9 | 131587830 | 131587941 | TRUE | OK | 207.1 | 0.00854 | 0.5943 | 0.8861 | 0.072 | 0.036 | 242.6 | 128.3 | 169.2 | 265.1 | 205.6 | 232.0 |
J044 | chr9 | 131588026 | 131588800 | TRUE | OK | 231.4 | 0.00411 | 0.6791 | 0.9133 | 0.043 | 0.021 | 252.4 | 141.8 | 215.5 | 299.8 | 236.0 | 242.7 |
J045 | chr9 | 131588986 | 131589885 | TRUE | OK | 190.7 | 0.00881 | 0.856 | 0.9647 | -0.064 | -0.032 | 216.9 | 106.4 | 199.4 | 229.3 | 180.2 | 211.7 |
J046 | chr9 | 131589978 | 131592098 | TRUE | OK | 203.4 | 0.00499 | 0.6888 | 0.9164 | 0.036 | 0.018 | 208.0 | 114.7 | 214.5 | 251.2 | 209.6 | 222.4 |
J047 | chr9 | 131592183 | 131596297 | TRUE | OK | 242.2 | 0.0029 | 0.5732 | 0.8792 | 0.056 | 0.028 | 264.3 | 156.4 | 214.5 | 289.9 | 247.8 | 280.4 |
J048 | chr9 | 131596373 | 131598198 | TRUE | OK | 195.3 | 0.00344 | 0.395 | 0.8222 | 0.113 | 0.057 | 198.2 | 147.0 | 156.1 | 246.2 | 195.9 | 228.2 |
J049 | chr9 | 131598310 | 131602060 | TRUE | OK | 165.5 | 0.00149 | 0.4224 | 0.8306 | 0.089 | 0.045 | 156.8 | 115.7 | 156.1 | 210.5 | 165.5 | 188.5 |
J050 | chr9 | 131602149 | 131603960 | TRUE | OK | 16.2 | 0.0116 | 0.2994 | 0.7915 | 0.370 | 0.185 | 12.8 | 10.4 | 14.1 | 28.8 | 15.7 | 15.5 |
J051 | chr9 | 131602149 | 131604930 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.267 | 0.8806 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
J052 | chr9 | 131602149 | 131621795 | TRUE | OK | 157.1 | 0.00336 | 0.2801 | 0.7851 | 0.133 | 0.067 | 144.0 | 90.7 | 165.2 | 185.7 | 171.4 | 185.6 |
J053 | chr9 | 131604053 | 131621795 | TRUE | OK | 11.4 | 0.0218 | 0.022 | 0.5065 | 1.044 | 0.522 | 3.9 | 6.3 | 9.1 | 20.8 | 9.8 | 18.4 |
J054 | chr9 | 131605188 | 131619050 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.469 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J055 | chr9 | 131619209 | 131621795 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.121 | 0.4592 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 |
J056 | chr9 | 131621998 | 131625921 | TRUE | OK | 159.7 | 0.0108 | 0.03488 | 0.5735 | 0.379 | 0.189 | 163.7 | 70.9 | 134.0 | 213.4 | 180.2 | 196.3 |
J057 | chr9 | 131626422 | 131627912 | TRUE | OK | 135.2 | 0.0116 | 0.761 | 0.9387 | 0.018 | 0.009 | 152.8 | 66.7 | 140.0 | 163.8 | 141.0 | 147.0 |
J058 | chr9 | 131628096 | 131628548 | TRUE | OK | 162.6 | 0.0192 | 0.6005 | 0.8881 | 0.081 | 0.040 | 187.3 | 78.2 | 157.1 | 190.6 | 151.8 | 210.8 |
J059 | chr9 | 131628672 | 131629101 | TRUE | OK | 164.7 | 0.0102 | 0.206 | 0.76 | 0.215 | 0.107 | 168.6 | 81.3 | 156.1 | 211.5 | 162.6 | 207.9 |
J060 | chr9 | 131629254 | 131630235 | TRUE | OK | 195.0 | 0.00326 | 0.02323 | 0.5144 | 0.280 | 0.140 | 193.3 | 108.4 | 167.2 | 237.3 | 217.4 | 246.5 |
J061 | chr9 | 131629254 | 131638634 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.167 | 0.4701 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
J062 | chr9 | 131630324 | 131638634 | TRUE | OK | 176.2 | 0.00766 | 0.09743 | 0.6965 | 0.273 | 0.137 | 159.7 | 95.9 | 169.2 | 217.4 | 175.3 | 239.8 |
J063 | chr9 | 131638791 | 131643238 | TRUE | OK | 216.4 | 0.00459 | 0.1975 | 0.7565 | 0.162 | 0.081 | 213.0 | 119.9 | 212.5 | 260.1 | 227.2 | 265.9 |
J064 | chr9 | 131643417 | 131650128 | TRUE | OK | 116.6 | 0.0314 | 0.2336 | 0.7705 | 0.274 | 0.137 | 127.2 | 40.7 | 112.8 | 139.0 | 140.0 | 140.2 |
J065 | chr9 | 131643417 | 131650809 | TRUE | OK | 54.0 | 0.0212 | 0.5159 | 0.861 | -0.219 | -0.110 | 64.1 | 30.2 | 62.4 | 44.7 | 69.5 | 53.2 |
J066 | chr9 | 131650242 | 131650809 | TRUE | OK | 81.5 | 0.0109 | 0.3336 | 0.802 | 0.173 | 0.087 | 83.8 | 35.5 | 84.6 | 102.3 | 88.1 | 94.7 |
J067 | chr9 | 131650949 | 131709619 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.174 | 0.7426 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 | 1.0 |
J068 | chr9 | 131650949 | 131737404 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J069 | chr9 | 131650949 | 131739769 | TRUE | OK | 81.6 | 0.0282 | 0.1796 | 0.7487 | -0.389 | -0.195 | 88.7 | 61.5 | 100.7 | 92.3 | 98.9 | 47.4 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000107263.18 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |