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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr14 | 20311367 | 20311369 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.206 | 0.2131 | NA | NA | NA | 4.9 | 4.2 | 0.0 | 1.0 | 2.0 | 0.0 |
E002 | chr14 | 20311369 | 20311428 | TRUE | OK | 52.4 | 0.0344 | 0.3596 | 0.8107 | -0.395 | -0.198 | 53.2 | 91.8 | 35.3 | 43.7 | 42.1 | 48.3 |
E003 | chr14 | 20311428 | 20311682 | TRUE | OK | 402.7 | 0.00843 | 0.8819 | 0.9716 | -0.039 | -0.019 | 390.5 | 503.6 | 343.5 | 413.0 | 392.7 | 373.2 |
E004 | chr14 | 20311682 | 20311703 | TRUE | OK | 325.2 | 0.00377 | 0.9941 | 0.9985 | -0.006 | -0.003 | 321.4 | 381.6 | 288.1 | 332.6 | 326.1 | 301.7 |
E005 | chr14 | 20311703 | 20311752 | TRUE | OK | 317.4 | 0.00225 | 0.6469 | 0.9034 | -0.052 | -0.026 | 312.6 | 366.0 | 301.2 | 310.7 | 303.6 | 310.4 |
E006 | chr14 | 20313467 | 20313636 | TRUE | OK | 455.1 | 0.00233 | 0.4242 | 0.8311 | -0.082 | -0.041 | 453.6 | 510.9 | 448.2 | 475.5 | 400.5 | 441.8 |
E007 | chr14 | 20313636 | 20313801 | TRUE | OK | 468.4 | 0.00321 | 0.8418 | 0.9612 | 0.026 | 0.013 | 483.1 | 493.2 | 439.1 | 520.2 | 422.1 | 452.5 |
E008 | chr14 | 20314210 | 20314649 | TRUE | OK | 31.5 | 0.0627 | 0.007895 | 0.3584 | -1.205 | -0.603 | 45.4 | 38.6 | 48.3 | 6.9 | 21.5 | 28.0 |
E009 | chr14 | 20315484 | 20315618 | TRUE | OK | 20.8 | 0.00904 | 0.1354 | 0.7267 | -0.454 | -0.227 | 20.7 | 26.1 | 26.2 | 20.8 | 12.7 | 18.4 |
E010 | chr14 | 20315780 | 20315850 | TRUE | OK | 22.1 | 0.022 | 0.7859 | 0.946 | 0.106 | 0.053 | 26.6 | 22.9 | 15.1 | 30.8 | 22.5 | 14.5 |
E011 | chr14 | 20316226 | 20316265 | TRUE | OK | 316.3 | 0.00542 | 0.5021 | 0.8562 | 0.094 | 0.047 | 348.1 | 312.8 | 276.0 | 339.5 | 297.7 | 323.9 |
E012 | chr14 | 20316265 | 20316408 | TRUE | OK | 432.8 | 0.00402 | 0.4324 | 0.8337 | 0.101 | 0.050 | 455.5 | 411.9 | 415.0 | 478.5 | 409.3 | 426.4 |
E013 | chr14 | 20316408 | 20316413 | TRUE | OK | 221.8 | 0.00476 | 0.2947 | 0.79 | 0.153 | 0.077 | 219.9 | 200.2 | 223.6 | 250.2 | 203.7 | 233.0 |
E014 | chr14 | 20316413 | 20316511 | TRUE | OK | 335.6 | 0.00456 | 0.2186 | 0.7644 | 0.167 | 0.084 | 338.2 | 300.3 | 335.4 | 377.3 | 327.1 | 335.5 |
E015 | chr14 | 20316511 | 20316560 | TRUE | OK | 260.9 | 0.00501 | 0.5156 | 0.8609 | 0.096 | 0.048 | 253.4 | 239.8 | 278.0 | 295.9 | 244.8 | 253.3 |
E016 | chr14 | 20317595 | 20317793 | TRUE | OK | 12.1 | 0.0163 | 0.4693 | 0.8459 | -0.285 | -0.143 | 11.8 | 11.5 | 17.1 | 13.9 | 11.8 | 6.8 |
E017 | chr14 | 20317793 | 20317794 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.2 | 0.0192 | 0.1645 | NA | NA | NA | 6.9 | 13.6 | 10.1 | 6.9 | 5.9 | 5.8 |
E018 | chr14 | 20317794 | 20317974 | TRUE | OK | 18.5 | 0.0111 | 0.2118 | 0.7622 | -0.403 | -0.201 | 18.7 | 21.9 | 23.2 | 21.8 | 14.7 | 10.6 |
E019 | chr14 | 20318255 | 20318470 | TRUE | OK | 13.7 | 0.0137 | 0.5586 | 0.8742 | -0.220 | -0.110 | 9.9 | 16.7 | 18.1 | 14.9 | 10.8 | 11.6 |
E020 | chr14 | 20319050 | 20319103 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.8 | 0.0281 | 0.0515 | NA | NA | NA | 15.8 | 8.3 | 11.1 | 6.9 | 2.9 | 7.7 |
E021 | chr14 | 20320287 | 20320392 | TRUE | OK | 14.4 | 0.0105 | 0.7917 | 0.9475 | 0.094 | 0.047 | 13.8 | 13.6 | 15.1 | 13.9 | 14.7 | 15.5 |
E022 | chr14 | 20325538 | 20325588 | TRUE | OK | 266.9 | 0.007 | 0.7995 | 0.9498 | 0.042 | 0.021 | 291.9 | 237.7 | 272.0 | 289.9 | 244.8 | 264.9 |
E023 | chr14 | 20325588 | 20325653 | TRUE | OK | 269.5 | 0.00325 | 0.9584 | 0.9904 | -0.004 | -0.002 | 290.9 | 261.7 | 267.9 | 288.9 | 247.8 | 260.1 |
E024 | chr14 | 20326715 | 20326793 | TRUE | OK | 265.3 | 0.00475 | 0.6679 | 0.9097 | 0.062 | 0.031 | 282.0 | 249.2 | 260.9 | 288.9 | 238.9 | 271.7 |
E025 | chr14 | 20329173 | 20329223 | TRUE | OK | 308.8 | 0.00979 | 0.08469 | 0.6832 | 0.308 | 0.154 | 327.4 | 247.1 | 284.0 | 333.6 | 335.9 | 324.9 |
E026 | chr14 | 20329223 | 20329270 | TRUE | OK | 310.2 | 0.00859 | 0.06562 | 0.6556 | 0.314 | 0.157 | 312.6 | 248.2 | 300.2 | 338.5 | 342.7 | 319.1 |
E027 | chr14 | 20329270 | 20329373 | TRUE | OK | 275.9 | 0.0115 | 0.03492 | 0.5738 | 0.409 | 0.204 | 273.1 | 205.4 | 262.9 | 309.8 | 322.2 | 282.3 |
E028 | chr14 | 20329373 | 20329374 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.7 | 0.139 | 0.6823 | NA | NA | NA | 2.0 | 6.3 | 11.1 | 4.0 | 8.8 | 1.9 |
E029 | chr14 | 20329374 | 20329377 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.125 | 0.1463 | NA | NA | NA | 1.0 | 5.2 | 5.0 | 1.0 | 2.9 | 0.0 |
E030 | chr14 | 20329377 | 20329380 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.104 | 0.02771 | NA | NA | NA | 1.0 | 4.2 | 3.0 | 0.0 | 1.0 | 0.0 |
E031 | chr14 | 20330525 | 20330888 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.0 | 0.0906 | 0.5895 | NA | NA | NA | 6.9 | 14.6 | 3.0 | 6.0 | 2.9 | 8.7 |
E032 | chr14 | 20332843 | 20333010 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0453 | 0.6851 | NA | NA | NA | 4.9 | 3.1 | 3.0 | 2.0 | 4.9 | 1.9 |
E033 | chr14 | 20333010 | 20333253 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0872 | 0.1773 | NA | NA | NA | 3.9 | 1.0 | 3.0 | 2.0 | 1.0 | 0.0 |
E034 | chr14 | 20333253 | 20333273 | TRUE | OK | 74.4 | 0.00352 | 3.592e-06 | 0.002424 | 0.804 | 0.402 | 55.2 | 56.3 | 56.4 | 96.3 | 98.9 | 83.1 |
E035 | chr14 | 20333273 | 20333279 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.7 | 0.21 | 0.8807 | NA | NA | NA | 3.9 | 8.3 | 1.0 | 4.0 | 1.0 | 9.7 |
E036 | chr14 | 20333279 | 20333282 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.188 | 0.6978 | NA | NA | NA | 3.0 | 2.1 | 1.0 | 1.0 | 1.0 | 6.8 |
E037 | chr14 | 20333282 | 20333303 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.188 | 0.6978 | NA | NA | NA | 3.0 | 2.1 | 1.0 | 1.0 | 1.0 | 6.8 |
E038 | chr14 | 20333303 | 20333312 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.865 | 0.6002 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J039 | chr14 | 20311752 | 20313467 | TRUE | OK | 244.1 | 0.0021 | 0.4646 | 0.8443 | -0.082 | -0.041 | 240.6 | 274.2 | 245.8 | 240.3 | 214.5 | 249.4 |
J040 | chr14 | 20313801 | 20315484 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.2 | 0.0183 | 0.8606 | NA | NA | NA | 4.9 | 7.3 | 4.0 | 6.0 | 3.9 | 4.8 |
J041 | chr14 | 20313801 | 20315780 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.9 | 0.0337 | 0.04056 | NA | NA | NA | 6.9 | 3.1 | 3.0 | 11.9 | 11.8 | 4.8 |
J042 | chr14 | 20313801 | 20316226 | TRUE | OK | 233.7 | 0.00854 | 0.2719 | 0.7829 | 0.188 | 0.094 | 264.3 | 213.8 | 193.4 | 264.1 | 222.3 | 244.6 |
J043 | chr14 | 20314649 | 20315484 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.226 | 0.6242 | NA | NA | NA | 5.9 | 1.0 | 1.0 | 0.0 | 2.9 | 1.9 |
J044 | chr14 | 20315618 | 20316226 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.0231 | 0.5559 | NA | NA | NA | 3.9 | 4.2 | 5.0 | 3.0 | 2.9 | 3.9 |
J045 | chr14 | 20315850 | 20316226 | TRUE | OK | 11.3 | 0.0188 | 0.5552 | 0.8732 | 0.251 | 0.126 | 12.8 | 12.5 | 6.0 | 16.9 | 11.8 | 7.7 |
J046 | chr14 | 20316560 | 20317793 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0287 | 0.4042 | NA | NA | NA | 3.9 | 4.2 | 4.0 | 1.0 | 2.9 | 3.9 |
J047 | chr14 | 20316560 | 20317794 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J048 | chr14 | 20316560 | 20318255 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0625 | 0.7668 | NA | NA | NA | 2.0 | 1.0 | 1.0 | 1.0 | 2.9 | 1.0 |
J049 | chr14 | 20316560 | 20320287 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.126 | 0.9953 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 1.0 | 1.0 | 0.0 |
J050 | chr14 | 20316560 | 20325538 | TRUE | OK | 194.9 | 0.00431 | 0.3972 | 0.823 | 0.122 | 0.061 | 201.1 | 172.0 | 197.4 | 219.4 | 183.1 | 196.3 |
J051 | chr14 | 20317974 | 20325538 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0828 | 0.2814 | NA | NA | NA | 5.9 | 1.0 | 6.0 | 4.0 | 2.0 | 1.0 |
J052 | chr14 | 20318470 | 20325538 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0351 | 0.4763 | NA | NA | NA | 1.0 | 3.1 | 2.0 | 3.0 | 2.9 | 2.9 |
J053 | chr14 | 20319103 | 20325538 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.696 | 0.8702 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 3.0 | 0.0 | 0.0 |
J054 | chr14 | 20320392 | 20325538 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.4 | 0.0392 | 0.774 | NA | NA | NA | 7.9 | 5.2 | 11.1 | 11.9 | 3.9 | 10.6 |
J055 | chr14 | 20325653 | 20326715 | TRUE | OK | 201.7 | 0.0043 | 0.6268 | 0.8967 | -0.066 | -0.033 | 223.8 | 199.2 | 202.5 | 211.5 | 170.4 | 203.0 |
J056 | chr14 | 20326793 | 20329173 | TRUE | OK | 155.1 | 0.00562 | 0.4648 | 0.8443 | 0.116 | 0.058 | 170.6 | 143.9 | 140.0 | 161.8 | 143.0 | 171.1 |
J057 | chr14 | 20326793 | 20329223 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.618 | 0.3618 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
J058 | chr14 | 20326793 | 20332843 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.267 | 1 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J059 | chr14 | 20326793 | 20333253 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.7 | 0.0168 | 0.03988 | NA | NA | NA | 7.9 | 4.2 | 6.0 | 13.9 | 6.9 | 13.5 |
J060 | chr14 | 20329373 | 20330525 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.158 | 0.1036 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 |
J061 | chr14 | 20329373 | 20332843 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.543 | 1 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
J062 | chr14 | 20329373 | 20333253 | TRUE | OK | 64.8 | 0.00383 | 1.114e-05 | 0.006028 | 0.809 | 0.404 | 45.4 | 50.1 | 50.4 | 82.4 | 92.1 | 68.6 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000100814.18 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |