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Raw Counts Table (ENSG00000074054.18)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Raw Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr2	121337775	121339989	TRUE	OK	2550.5	0.0209	0.4742	0.8475	-0.119	-0.059	2226.0	1872.0	2037.0	3038.0	3116.0	3141.0
E002	chr2	121339989	121340721	TRUE	OK	1160.2	0.00175	0.2676	0.7814	0.079	0.040	1089.0	587.0	951.0	1473.0	1412.0	1523.0
E003	chr2	121340721	121340947	TRUE	OK	572.6	0.00243	0.1833	0.7504	0.123	0.062	530.0	288.0	452.0	731.0	688.0	784.0
E004	chr2	121347037	121347154	TRUE	OK	486.9	0.00143	0.7246	0.9276	0.019	0.009	464.0	241.0	421.0	608.0	610.0	608.0
E005	chr2	121348511	121348718	TRUE	OK	530.9	0.0025	0.4059	0.8256	0.070	0.035	487.0	254.0	462.0	713.0	671.0	631.0
E006	chr2	121363171	121363300	TRUE	OK	472.9	0.00427	0.7833	0.9452	0.015	0.007	451.0	222.0	423.0	647.0	550.0	573.0
E007	chr2	121364118	121365093	TRUE	OK	21.6	0.0182	0.3326	0.8017	0.351	0.176	17.0	11.0	15.0	22.0	40.0	26.0
E008	chr2	121365093	121365284	TRUE	OK	537.3	0.0017	0.2274	0.768	-0.116	-0.058	513.0	283.0	513.0	677.0	641.0	627.0
E009	chr2	121367587	121367831	TRUE	OK	567.1	0.00105	0.1946	0.7559	-0.098	-0.049	531.0	334.0	506.0	702.0	668.0	693.0
E010	chr2	121377498	121377649	TRUE	OK	454.5	0.00175	0.9458	0.9872	-0.014	-0.007	449.0	239.0	377.0	574.0	546.0	570.0
E011	chr2	121382207	121382324	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E012	chr2	121387121	121387228	TRUE	OK	391.6	0.00215	0.1601	0.739	0.125	0.063	366.0	180.0	321.0	491.0	498.0	520.0
E013	chr2	121387762	121387906	TRUE	OK	455.3	0.00317	0.6921	0.9174	0.024	0.012	434.0	212.0	405.0	605.0	542.0	562.0
E014	chr2	121387906	121388076	TRUE	OK	9.6	0.0316	0.2881	0.7879	-0.485	-0.242	7.0	10.0	10.0	12.0	13.0	6.0
E015	chr2	121397139	121397283	TRUE	OK	433.6	0.00278	0.4939	0.8537	-0.094	-0.047	426.0	209.0	414.0	523.0	519.0	537.0
E016	chr2	121398321	121398400	TRUE	OK	261.5	0.00734	0.7327	0.9303	-0.094	-0.047	273.0	114.0	247.0	312.0	298.0	342.0
E017	chr2	121401508	121401672	TRUE	OK	415.6	0.00325	0.4615	0.8433	0.064	0.032	384.0	191.0	369.0	493.0	534.0	550.0
E018	chr2	121401867	121401870	TRUE	OK	263.4	0.00232	0.1818	0.7497	0.135	0.068	241.0	120.0	219.0	325.0	334.0	359.0
E019	chr2	121402594	121402663	TRUE	OK	10.9	0.0519	0.04638	0.6151	-1.121	-0.560	23.0	7.0	8.0	6.0	10.0	12.0
E020	chr2	121404370	121404434	TRUE	OK	364.7	0.00615	0.5043	0.8571	0.062	0.031	347.0	153.0	330.0	443.0	454.0	486.0
E021	chr2	121407470	121407518	TRUE	OK	340.2	0.00988	0.4012	0.8244	0.098	0.049	326.0	131.0	306.0	416.0	423.0	463.0
E022	chr2	121407518	121407712	TRUE	OK	501.0	0.00967	0.7649	0.9397	-0.002	-0.001	495.0	205.0	471.0	614.0	603.0	651.0
E023	chr2	121407712	121407715	TRUE	OK	240.9	0.00548	0.505	0.8574	-0.130	-0.065	245.0	108.0	239.0	303.0	276.0	289.0
E024	chr2	121409023	121409047	TRUE	OK	65.7	0.00945	0.569	0.8778	-0.138	-0.069	63.0	31.0	68.0	94.0	63.0	79.0
E025	chr2	121410865	121410969	TRUE	OK	329.1	0.00746	0.671	0.9106	-0.111	-0.056	337.0	143.0	323.0	400.0	382.0	410.0
E026	chr2	121418621	121418729	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.396	0.7689	NA	NA	NA	1.0	0.0	0.0	0.0	1.0	0.0
E027	chr2	121425138	121425306	TRUE	OK	390.1	0.0146	0.7045	0.9211	-0.123	-0.062	418.0	170.0	369.0	467.0	392.0	550.0
E028	chr2	121427403	121427430	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.055	0.6151	NA	NA	NA	4.0	1.0	4.0	4.0	1.0	6.0
E029	chr2	121427430	121427470	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.394	0.4331	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	1.0
E030	chr2	121430072	121430177	TRUE	OK	324.4	0.0145	0.2928	0.7896	0.184	0.092	321.0	127.0	254.0	435.0	347.0	486.0
E031	chr2	121444938	121444962	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.107	0.1012	NA	NA	NA	0.0	0.0	1.0	3.0	4.0	1.0
E032	chr2	121445448	121445496	TRUE	OK	90.8	0.0211	0.1179	0.7143	0.376	0.188	87.0	26.0	67.0	145.0	100.0	127.0
E033	chr2	121447336	121447507	TRUE	OK	406.1	0.0046	0.08689	0.6855	0.203	0.101	358.0	176.0	337.0	528.0	483.0	583.0
E034	chr2	121448275	121448325	TRUE	OK	289.1	0.00294	0.1827	0.7501	0.138	0.069	246.0	128.0	262.0	358.0	375.0	385.0
E035	chr2	121448952	121449120	TRUE	OK	391.8	0.00324	0.2284	0.7684	0.118	0.059	334.0	175.0	361.0	503.0	493.0	510.0
E036	chr2	121450912	121450990	TRUE	OK	346.5	0.00386	0.04973	0.6248	0.220	0.110	297.0	143.0	297.0	448.0	436.0	482.0
E037	chr2	121451789	121451849	TRUE	OK	273.5	0.0095	0.1508	0.7351	0.216	0.108	246.0	102.0	235.0	356.0	325.0	397.0
E038	chr2	121457686	121457757	TRUE	OK	280.6	0.0122	0.09494	0.6939	0.278	0.139	265.0	98.0	220.0	371.0	341.0	410.0
E039	chr2	121458839	121458915	TRUE	OK	279.8	0.0173	0.1389	0.7291	0.265	0.133	268.0	89.0	228.0	390.0	340.0	385.0
E040	chr2	121458915	121458975	TRUE	OK	245.3	0.0167	0.1432	0.7316	0.264	0.132	244.0	80.0	189.0	356.0	306.0	315.0
E041	chr2	121459621	121459979	FALSE	LOW_COUNTS_INDEP_FILTER	5.6	0.0348	0.366	NA	NA	NA	1.0	5.0	4.0	9.0	6.0	9.0
E042	chr2	121459979	121460014	TRUE	OK	232.0	0.0184	0.474	0.8475	0.088	0.044	245.0	78.0	200.0	311.0	298.0	276.0
E043	chr2	121460014	121460125	TRUE	OK	292.3	0.0136	0.8799	0.9711	-0.035	-0.017	317.0	113.0	263.0	386.0	348.0	346.0
E044	chr2	121461100	121461108	TRUE	OK	201.0	0.00893	0.87	0.9685	-0.076	-0.038	222.0	84.0	178.0	254.0	232.0	249.0
E045	chr2	121461108	121461193	TRUE	OK	314.6	0.00974	0.9097	0.9786	-0.031	-0.015	325.0	128.0	291.0	410.0	365.0	389.0
E046	chr2	121461193	121461195	FALSE	LOW_COUNTS_INDEP_FILTER	4.8	0.0306	0.0105	NA	NA	NA	8.0	3.0	8.0	2.0	5.0	3.0
E047	chr2	121462531	121462534	TRUE	OK	213.5	0.00596	0.834	0.9589	-0.059	-0.030	216.0	95.0	199.0	286.0	237.0	261.0
E048	chr2	121462534	121462605	TRUE	OK	272.0	0.00828	0.5187	0.862	0.087	0.043	253.0	117.0	242.0	400.0	303.0	334.0
E049	chr2	121469807	121469960	TRUE	OK	366.0	0.0102	0.5542	0.873	0.067	0.034	331.0	150.0	350.0	518.0	416.0	454.0
E050	chr2	121490272	121490328	TRUE	OK	13.8	0.0162	7.383e-09	1.234e-05	3.021	1.511	2.0	0.0	4.0	30.0	28.0	20.0
E051	chr2	121503166	121503220	TRUE	OK	244.9	0.00612	0.6718	0.9109	-0.079	-0.039	228.0	120.0	241.0	341.0	266.0	287.0
E052	chr2	121503220	121503234	TRUE	OK	211.2	0.0049	0.3714	0.8139	-0.142	-0.071	201.0	107.0	213.0	280.0	223.0	255.0
E053	chr2	121503813	121503988	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.85	0.8322	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
E054	chr2	121504929	121505093	FALSE	LOW_COUNTS_INDEP_FILTER	4.3	0.0512	0.4834	NA	NA	NA	5.0	1.0	2.0	6.0	3.0	9.0
E055	chr2	121505174	121505360	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E056	chr2	121512982	121513073	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E057	chr2	121515664	121515762	TRUE	OK	257.3	0.0117	0.8737	0.9693	-0.067	-0.033	254.0	110.0	253.0	369.0	280.0	293.0
E058	chr2	121525844	121525920	TRUE	OK	199.2	0.0144	0.9014	0.9765	-0.062	-0.031	203.0	83.0	191.0	294.0	229.0	207.0
E059	chr2	121525920	121525967	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.394	0.7173	NA	NA	NA	2.0	0.0	0.0	4.0	0.0	1.0
E060	chr2	121527798	121527890	TRUE	OK	230.5	0.0153	0.9832	0.9959	-0.052	-0.026	238.0	89.0	223.0	326.0	266.0	255.0
E061	chr2	121528676	121528780	TRUE	OK	235.8	0.0197	0.521	0.8626	0.082	0.041	242.0	80.0	211.0	336.0	262.0	300.0
E062	chr2	121530246	121530325	TRUE	OK	236.8	0.0124	0.4005	0.8242	0.111	0.055	226.0	85.0	217.0	314.0	279.0	316.0
E063	chr2	121530325	121530745	TRUE	OK	46.7	0.00755	0.9936	0.9984	-0.007	-0.004	52.0	26.0	31.0	53.0	57.0	64.0
E064	chr2	121605700	121606060	TRUE	OK	342.6	0.00815	0.4082	0.8264	0.095	0.047	322.0	137.0	310.0	468.0	406.0	435.0
E065	chr2	121606060	121606180	TRUE	OK	143.0	0.0133	0.2097	0.7612	0.235	0.117	140.0	51.0	111.0	222.0	174.0	170.0
E066	chr2	121649371	121649438	TRUE	OK	92.1	0.0352	0.484	0.8508	0.119	0.059	105.0	24.0	76.0	137.0	115.0	102.0
E067	chr2	121649438	121649476	TRUE	OK	22.4	0.0553	0.6385	0.9005	0.065	0.032	32.0	4.0	15.0	32.0	26.0	27.0
E068	chr2	121649476	121649587	TRUE	OK	10.8	0.125	0.8285	0.9573	-0.141	-0.071	20.0	1.0	6.0	10.0	12.0	17.0
J069	chr2	121340947	121347037	TRUE	OK	309.5	0.00285	0.3771	0.8158	0.084	0.042	295.0	142.0	260.0	365.0	401.0	415.0
J070	chr2	121347154	121348511	TRUE	OK	289.0	0.00105	0.8106	0.9527	-0.027	-0.013	274.0	156.0	250.0	375.0	349.0	347.0
J071	chr2	121348718	121363171	TRUE	OK	254.7	0.00662	0.1916	0.7544	0.179	0.089	224.0	103.0	224.0	372.0	302.0	320.0
J072	chr2	121363300	121365093	TRUE	OK	276.9	0.00195	0.3534	0.8084	-0.107	-0.053	269.0	142.0	262.0	364.0	316.0	324.0
J073	chr2	121365284	121367587	TRUE	OK	281.3	0.000929	0.1486	0.7342	-0.132	-0.066	263.0	163.0	264.0	340.0	336.0	337.0
J074	chr2	121367831	121377498	TRUE	OK	246.4	0.00214	0.4836	0.8507	-0.071	-0.036	231.0	158.0	201.0	308.0	282.0	312.0
J075	chr2	121377649	121382207	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J076	chr2	121377649	121387121	TRUE	OK	233.9	0.00157	0.3821	0.8177	0.080	0.040	226.0	111.0	190.0	293.0	290.0	309.0
J077	chr2	121382324	121387121	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J078	chr2	121387228	121387762	TRUE	OK	271.0	0.00197	0.0261	0.5316	0.223	0.111	249.0	118.0	208.0	364.0	338.0	368.0
J079	chr2	121387906	121397139	TRUE	OK	271.0	0.00121	0.3606	0.811	-0.096	-0.048	264.0	137.0	255.0	339.0	324.0	323.0
J080	chr2	121397283	121398321	TRUE	OK	208.3	0.00563	0.5273	0.8648	-0.125	-0.062	215.0	94.0	202.0	249.0	230.0	273.0
J081	chr2	121398400	121401508	TRUE	OK	183.4	0.00285	0.7648	0.9397	-0.055	-0.027	181.0	85.0	171.0	208.0	227.0	240.0
J082	chr2	121401672	121401867	TRUE	OK	258.9	0.00162	0.13	0.7233	0.144	0.072	235.0	118.0	215.0	318.0	332.0	353.0
J083	chr2	121401672	121404370	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.56	0.809	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J084	chr2	121401870	121402594	FALSE	LOW_COUNTS_INDEP_FILTER	6.5	0.025	0.09155	NA	NA	NA	11.0	6.0	4.0	4.0	6.0	8.0
J085	chr2	121401870	121404370	TRUE	OK	247.0	0.00149	0.09214	0.691	0.160	0.080	219.0	110.0	209.0	311.0	314.0	336.0
J086	chr2	121402663	121404370	FALSE	LOW_COUNTS_INDEP_FILTER	5.3	0.134	0.1898	NA	NA	NA	13.0	5.0	1.0	3.0	5.0	5.0
J087	chr2	121404434	121407470	TRUE	OK	265.0	0.0137	0.4783	0.8489	0.088	0.044	251.0	97.0	249.0	312.0	328.0	372.0
J088	chr2	121407712	121409023	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.271	0.7239	NA	NA	NA	5.0	0.0	4.0	4.0	0.0	7.0
J089	chr2	121407715	121409023	TRUE	OK	50.9	0.011	0.8976	0.9755	-0.033	-0.016	49.0	25.0	46.0	79.0	47.0	62.0
J090	chr2	121407715	121410865	TRUE	OK	185.1	0.00454	0.5303	0.8654	-0.120	-0.060	188.0	81.0	184.0	216.0	227.0	226.0
J091	chr2	121409047	121410865	TRUE	OK	56.8	0.00704	0.917	0.9805	-0.033	-0.017	51.0	26.0	57.0	81.0	56.0	73.0
J092	chr2	121410969	121418621	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.56	0.809	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J093	chr2	121410969	121425138	TRUE	OK	209.5	0.00719	0.5848	0.8829	-0.130	-0.065	213.0	90.0	212.0	248.0	239.0	268.0
J094	chr2	121418729	121425138	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J095	chr2	121425306	121427403	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.0516	0.1369	NA	NA	NA	4.0	1.0	4.0	2.0	0.0	4.0
J096	chr2	121425306	121430072	TRUE	OK	201.6	0.0243	0.9847	0.9962	-0.035	-0.017	230.0	88.0	160.0	244.0	186.0	316.0
J097	chr2	121427430	121430072	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0771	0.5416	NA	NA	NA	4.0	1.0	3.0	4.0	0.0	5.0
J098	chr2	121430177	121444938	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.151	0.6106	NA	NA	NA	0.0	0.0	1.0	2.0	0.0	1.0
J099	chr2	121430177	121445448	TRUE	OK	65.8	0.0288	0.2784	0.7844	0.316	0.158	66.0	21.0	47.0	108.0	61.0	97.0
J100	chr2	121430177	121447336	TRUE	OK	166.9	0.00638	0.05322	0.6333	0.300	0.150	147.0	66.0	129.0	214.0	200.0	258.0
J101	chr2	121444962	121447336	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J102	chr2	121445496	121447336	TRUE	OK	68.3	0.017	0.04777	0.6195	0.491	0.246	60.0	19.0	49.0	113.0	76.0	98.0
J103	chr2	121447507	121448275	TRUE	OK	210.2	0.00178	0.1968	0.7564	0.132	0.066	180.0	96.0	187.0	266.0	258.0	288.0
J104	chr2	121448325	121448952	TRUE	OK	213.0	0.0024	0.2668	0.7812	0.118	0.059	184.0	97.0	191.0	252.0	280.0	288.0
J105	chr2	121449120	121450912	TRUE	OK	247.7	0.0019	0.214	0.7629	0.122	0.061	203.0	115.0	230.0	320.0	311.0	323.0
J106	chr2	121450990	121451789	TRUE	OK	211.6	0.0123	0.05642	0.641	0.340	0.170	189.0	70.0	168.0	286.0	255.0	318.0
J107	chr2	121451849	121457686	TRUE	OK	211.2	0.00763	0.06385	0.6533	0.286	0.143	192.0	81.0	163.0	270.0	256.0	321.0
J108	chr2	121457757	121458839	TRUE	OK	200.3	0.0134	0.09565	0.6945	0.297	0.149	189.0	66.0	157.0	276.0	240.0	289.0
J109	chr2	121458975	121459979	TRUE	OK	160.3	0.0194	0.4244	0.8312	0.129	0.065	175.0	55.0	125.0	232.0	202.0	184.0
J110	chr2	121460125	121461100	TRUE	OK	197.5	0.00837	0.878	0.9705	-0.072	-0.036	217.0	82.0	176.0	249.0	230.0	244.0
J111	chr2	121461193	121462531	TRUE	OK	210.0	0.0051	0.879	0.9708	-0.046	-0.023	212.0	94.0	193.0	282.0	233.0	259.0
J112	chr2	121462605	121469807	TRUE	OK	198.6	0.00822	0.249	0.7752	0.176	0.088	178.0	79.0	173.0	292.0	222.0	261.0
J113	chr2	121469960	121490272	TRUE	OK	12.9	0.0103	7.468e-09	1.242e-05	2.925	1.463	2.0	0.0	4.0	28.0	25.0	20.0
J114	chr2	121469960	121503166	TRUE	OK	202.4	0.0097	0.8577	0.9652	-0.057	-0.029	188.0	91.0	204.0	289.0	213.0	241.0
J115	chr2	121503234	121503813	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J116	chr2	121503234	121504929	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.0484	0.831	NA	NA	NA	3.0	0.0	2.0	4.0	1.0	4.0
J117	chr2	121503234	121505174	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J118	chr2	121503234	121515664	TRUE	OK	163.3	0.00235	0.4402	0.8362	-0.107	-0.053	159.0	82.0	156.0	215.0	178.0	199.0
J119	chr2	121505360	121512982	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J120	chr2	121515762	121525844	TRUE	OK	144.6	0.0135	0.9942	0.9985	-0.027	-0.013	139.0	60.0	142.0	218.0	163.0	154.0
J121	chr2	121525920	121527798	TRUE	OK	146.8	0.0163	0.9987	0.9996	-0.043	-0.021	157.0	58.0	134.0	217.0	173.0	151.0
J122	chr2	121527890	121528676	TRUE	OK	155.8	0.0207	0.817	0.9543	-0.018	-0.009	167.0	53.0	147.0	220.0	176.0	182.0
J123	chr2	121528780	121530246	TRUE	OK	160.7	0.00777	0.313	0.7952	0.148	0.074	148.0	62.0	142.0	223.0	180.0	220.0
J124	chr2	121530325	121605700	TRUE	OK	143.3	0.0166	0.4949	0.8541	0.106	0.053	128.0	50.0	142.0	186.0	157.0	207.0
J125	chr2	121606180	121649371	TRUE	OK	87.3	0.0308	0.4032	0.825	0.181	0.091	93.0	24.0	72.0	136.0	111.0	94.0
N126	chr2	121407712	121410865	TRUE	OK	11.1	0.0217	0.7634	0.9393	-0.117	-0.059	10.0	8.0	9.0	7.0	16.0	17.0
N127	chr2	121530775	121532377	TRUE	OK	10.8	0.0149	0.4326	0.8337	0.318	0.159	13.0	4.0	5.0	13.0	13.0	18.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000074054.18
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE