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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr1 | 210328251 | 210328384 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.386 | 0.3432 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 |
E002 | chr1 | 210328901 | 210328905 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.161 | 0.6527 | NA | NA | NA | 3.9 | 1.0 | 3.0 | 6.0 | 0.0 | 1.9 |
E003 | chr1 | 210328905 | 210329104 | TRUE | OK | 34.3 | 0.051 | 0.8909 | 0.9739 | -0.046 | -0.023 | 43.4 | 10.4 | 39.3 | 39.7 | 30.4 | 42.5 |
E004 | chr1 | 210329299 | 210329483 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.164 | 0.9332 | NA | NA | NA | 4.9 | 2.1 | 0.0 | 3.0 | 3.9 | 1.0 |
E005 | chr1 | 210348932 | 210349066 | TRUE | OK | 31.9 | 0.0332 | 0.0804 | 0.6775 | 0.598 | 0.299 | 32.5 | 8.3 | 27.2 | 36.7 | 44.1 | 42.5 |
E006 | chr1 | 210362851 | 210362919 | TRUE | OK | 25.1 | 0.00775 | 0.04333 | 0.6051 | 0.591 | 0.295 | 19.7 | 15.6 | 18.1 | 27.8 | 31.3 | 37.7 |
E007 | chr1 | 210369714 | 210369783 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E008 | chr1 | 210387467 | 210387581 | TRUE | OK | 32.8 | 0.0135 | 0.5602 | 0.8748 | -0.184 | -0.092 | 40.4 | 18.8 | 34.2 | 27.8 | 33.3 | 42.5 |
E009 | chr1 | 210400467 | 210400662 | TRUE | OK | 30.1 | 0.0112 | 0.3659 | 0.8122 | -0.253 | -0.127 | 33.5 | 29.2 | 25.2 | 24.8 | 33.3 | 34.8 |
E010 | chr1 | 210404463 | 210404679 | TRUE | OK | 40.2 | 0.0148 | 0.8788 | 0.9708 | -0.039 | -0.019 | 41.4 | 33.4 | 34.2 | 34.7 | 52.9 | 44.5 |
E011 | chr1 | 210418153 | 210418325 | TRUE | OK | 29.7 | 0.00961 | 0.1307 | 0.7238 | -0.411 | -0.205 | 31.6 | 29.2 | 30.2 | 24.8 | 23.5 | 38.7 |
E012 | chr1 | 210439582 | 210439753 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.9 | 0.2578 | NA | NA | NA | 3.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E013 | chr1 | 210464504 | 210464655 | TRUE | OK | 29.6 | 0.0098 | 0.8279 | 0.9572 | -0.053 | -0.026 | 30.6 | 22.9 | 27.2 | 35.7 | 21.5 | 39.6 |
E014 | chr1 | 210513152 | 210513188 | TRUE | OK | 24.7 | 0.0182 | 0.9745 | 0.9938 | 0.015 | 0.007 | 21.7 | 20.9 | 23.2 | 31.8 | 15.7 | 34.8 |
E015 | chr1 | 210587897 | 210588099 | TRUE | OK | 40.8 | 0.0057 | 0.1858 | 0.7511 | 0.314 | 0.157 | 37.5 | 26.1 | 34.2 | 46.7 | 42.1 | 58.0 |
E016 | chr1 | 210588099 | 210590542 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.327 | 0.192 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 1.0 | 0.0 |
E017 | chr1 | 210623525 | 210623670 | TRUE | OK | 45.1 | 0.0071 | 0.8405 | 0.9609 | -0.054 | -0.027 | 48.3 | 28.2 | 46.3 | 41.7 | 48.0 | 58.0 |
E018 | chr1 | 210674287 | 210676290 | TRUE | OK | 177.4 | 0.00526 | 0.7823 | 0.9451 | -0.042 | -0.021 | 158.7 | 142.9 | 177.3 | 206.5 | 177.2 | 202.1 |
E019 | chr1 | 210676290 | 210676296 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.168 | 0.5305 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 0.0 | 1.0 | 1.0 |
J020 | chr1 | 210328384 | 210348932 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.566 | 0.6778 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J021 | chr1 | 210329104 | 210348932 | TRUE | OK | 24.5 | 0.0344 | 0.3818 | 0.8176 | 0.280 | 0.140 | 27.6 | 6.3 | 25.2 | 28.8 | 26.4 | 32.9 |
J022 | chr1 | 210329104 | 210362851 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.4 | 0.053 | 0.5312 | NA | NA | NA | 10.8 | 3.1 | 3.0 | 6.0 | 3.9 | 5.8 |
J023 | chr1 | 210329483 | 210348932 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J024 | chr1 | 210349066 | 210362851 | TRUE | OK | 12.0 | 0.0101 | 3.678e-05 | 0.01494 | 1.776 | 0.888 | 5.9 | 4.2 | 4.0 | 16.9 | 21.5 | 19.3 |
J025 | chr1 | 210362919 | 210387467 | TRUE | OK | 16.0 | 0.00865 | 0.9232 | 0.982 | 0.035 | 0.017 | 14.8 | 11.5 | 16.1 | 13.9 | 15.7 | 24.2 |
J026 | chr1 | 210369783 | 210387467 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J027 | chr1 | 210387581 | 210400467 | TRUE | OK | 14.0 | 0.0207 | 0.4917 | 0.8532 | -0.266 | -0.133 | 15.8 | 9.4 | 16.1 | 9.9 | 10.8 | 22.2 |
J028 | chr1 | 210387581 | 210404463 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.3 | 0.0245 | 0.688 | NA | NA | NA | 10.8 | 3.1 | 7.1 | 8.9 | 8.8 | 4.8 |
J029 | chr1 | 210387581 | 210418153 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.123 | 0.5028 | NA | NA | NA | 1.0 | 2.1 | 0.0 | 0.0 | 1.0 | 1.0 |
J030 | chr1 | 210387581 | 210513152 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J031 | chr1 | 210400662 | 210404463 | TRUE | OK | 14.9 | 0.0578 | 0.633 | 0.8986 | -0.241 | -0.121 | 16.8 | 18.8 | 8.1 | 12.9 | 20.6 | 12.6 |
J032 | chr1 | 210404679 | 210418153 | TRUE | OK | 14.7 | 0.0191 | 0.4558 | 0.8413 | -0.272 | -0.136 | 14.8 | 12.5 | 16.1 | 9.9 | 11.8 | 23.2 |
J033 | chr1 | 210418325 | 210464504 | TRUE | OK | 14.8 | 0.00828 | 0.3234 | 0.7989 | -0.339 | -0.170 | 15.8 | 14.6 | 14.1 | 14.9 | 10.8 | 18.4 |
J034 | chr1 | 210439753 | 210464504 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.895 | 0.2565 | NA | NA | NA | 3.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J035 | chr1 | 210464655 | 210513152 | TRUE | OK | 19.0 | 0.0346 | 0.9545 | 0.9894 | 0.024 | 0.012 | 19.7 | 15.6 | 15.1 | 24.8 | 9.8 | 29.0 |
J036 | chr1 | 210513188 | 210587897 | TRUE | OK | 18.3 | 0.00956 | 0.3381 | 0.8034 | 0.324 | 0.162 | 14.8 | 12.5 | 16.1 | 25.8 | 13.7 | 27.1 |
J037 | chr1 | 210588099 | 210623525 | TRUE | OK | 23.7 | 0.0149 | 0.4089 | 0.8268 | 0.274 | 0.137 | 22.7 | 14.6 | 20.1 | 18.9 | 29.4 | 36.7 |
J038 | chr1 | 210623670 | 210674287 | TRUE | OK | 26.3 | 0.00528 | 0.4505 | 0.8396 | -0.208 | -0.104 | 30.6 | 16.7 | 28.2 | 26.8 | 24.5 | 30.9 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000054392.13 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |