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Normalized Counts Table (ENSG00000029363.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr6	136256626	136256862	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.189	0.6228	NA	NA	NA	3.0	1.0	0.0	0.0	2.9	2.9
E002	chr6	136256862	136258293	TRUE	OK	81.1	0.00436	0.5694	0.8779	0.099	0.049	83.8	73.0	80.6	99.3	77.4	72.5
E003	chr6	136258293	136258525	TRUE	OK	106.3	0.00581	0.3324	0.8016	-0.161	-0.080	110.4	123.0	106.8	105.2	87.2	105.4
E004	chr6	136258525	136258585	TRUE	OK	95.2	0.00818	0.1901	0.7539	-0.244	-0.122	96.6	109.5	106.8	84.4	71.5	102.5
E005	chr6	136258585	136258592	TRUE	OK	85.5	0.00479	0.5436	0.8699	-0.100	-0.050	85.8	91.8	90.7	80.4	70.5	93.8
E006	chr6	136258592	136259350	TRUE	OK	2905.6	0.00915	0.1044	0.702	-0.258	-0.129	2984.6	3414.9	3073.0	2656.7	2586.3	2717.8
E007	chr6	136259350	136259690	TRUE	OK	1956.9	0.00363	0.6244	0.896	-0.046	-0.023	2009.5	2028.1	1981.2	1962.7	1818.5	1941.4
E008	chr6	136259690	136259695	TRUE	OK	781.6	0.00236	0.7311	0.9297	0.034	0.017	809.5	770.6	763.5	767.4	764.8	814.1
E009	chr6	136259695	136260745	TRUE	OK	4070.6	0.00103	0.03525	0.5755	-0.119	-0.059	4548.5	3930.0	4263.6	4079.4	3721.3	3880.9
E010	chr6	136260745	136260894	TRUE	OK	1208.5	0.00177	0.2068	0.7603	-0.097	-0.049	1337.0	1204.3	1237.9	1135.8	1167.3	1168.9
E011	chr6	136260894	136260901	TRUE	OK	727.0	0.00343	0.1413	0.7308	-0.155	-0.077	795.7	780.0	741.3	664.2	680.6	700.0
E012	chr6	136260901	136260927	TRUE	OK	890.4	0.00237	0.03348	0.5677	-0.190	-0.095	1003.8	937.4	926.6	809.1	809.9	855.7
E013	chr6	136260927	136261003	TRUE	OK	1055.6	0.00228	0.007573	0.3522	-0.233	-0.116	1232.5	1114.7	1094.9	991.8	918.6	981.3
E014	chr6	136261003	136261029	TRUE	OK	839.1	0.00265	0.007019	0.34	-0.257	-0.129	1037.3	842.5	878.3	794.2	687.5	794.7
E015	chr6	136261029	136261109	TRUE	OK	1371.7	0.00202	0.3556	0.8093	-0.074	-0.037	1553.9	1340.9	1362.8	1344.2	1247.6	1380.6
E016	chr6	136261109	136261115	TRUE	OK	1147.3	0.00235	0.5917	0.8852	-0.046	-0.023	1278.9	1133.4	1118.0	1129.8	1063.5	1160.2
E017	chr6	136261264	136261300	TRUE	OK	1346.1	0.00147	0.8995	0.976	-0.008	-0.004	1491.8	1269.0	1331.5	1357.1	1248.6	1378.7
E018	chr6	136261300	136261477	TRUE	OK	2429.8	0.00101	0.0184	0.4788	0.140	0.070	2495.6	2212.7	2349.9	2531.6	2469.7	2519.6
E019	chr6	136267028	136267175	TRUE	OK	1383.3	0.00093	0.0289	0.5473	0.132	0.066	1443.5	1237.7	1336.6	1423.7	1409.2	1449.3
E020	chr6	136268161	136268273	TRUE	OK	1932.8	0.000989	0.001556	0.1682	0.190	0.095	1941.5	1711.1	1864.4	2039.2	1924.3	2116.4
E021	chr6	136268273	136268322	TRUE	OK	1320.4	0.00165	0.00677	0.3351	0.207	0.103	1338.0	1188.7	1212.7	1421.7	1318.1	1443.5
E022	chr6	136268322	136268339	TRUE	OK	1297.6	0.000802	0.000154	0.0418	0.220	0.110	1297.6	1125.1	1234.9	1380.0	1326.9	1421.2
E023	chr6	136268339	136268409	TRUE	OK	31.7	0.035	0.2456	0.7741	0.472	0.236	33.5	24.0	23.2	22.8	52.9	33.8
E024	chr6	136268409	136268671	TRUE	OK	28.8	0.0721	0.3132	0.7952	0.540	0.270	33.5	12.5	25.2	15.9	35.3	50.3
E025	chr6	136269088	136269140	TRUE	OK	13.5	0.0543	0.08204	0.6799	0.933	0.467	10.8	5.2	12.1	9.9	14.7	28.0
E026	chr6	136269140	136269230	TRUE	OK	55.6	0.00482	0.236	0.7711	0.227	0.114	57.2	39.6	58.4	54.6	55.8	67.7
E027	chr6	136269230	136269261	TRUE	OK	45.7	0.00521	0.7973	0.949	0.049	0.024	47.3	34.4	54.4	43.7	44.1	50.3
E028	chr6	136269261	136269263	TRUE	OK	36.8	0.00597	0.7628	0.9392	0.064	0.032	37.5	27.1	44.3	34.7	38.2	38.7
E029	chr6	136269263	136269303	TRUE	OK	44.6	0.00598	0.9064	0.9777	0.018	0.009	45.4	33.4	55.4	41.7	48.0	43.5
E030	chr6	136269303	136269436	TRUE	OK	21.3	0.00914	0.2683	0.7817	0.324	0.162	21.7	11.5	24.2	22.8	22.5	25.1
E031	chr6	136269436	136269475	TRUE	OK	1416.8	0.000834	0.00115	0.1427	0.188	0.094	1456.3	1215.8	1366.8	1475.3	1443.5	1543.1
E032	chr6	136269475	136269520	TRUE	OK	1474.9	0.000875	0.09364	0.6922	0.100	0.050	1500.7	1333.6	1496.7	1550.7	1421.9	1546.0
E033	chr6	136269520	136269612	TRUE	OK	1633.0	0.000965	0.2236	0.7664	0.075	0.037	1674.2	1486.9	1674.0	1720.5	1546.3	1695.8
E034	chr6	136269612	136269740	TRUE	OK	46.7	0.0364	0.5344	0.8669	-0.232	-0.116	68.0	32.3	52.4	52.6	49.9	25.1
E035	chr6	136269740	136269959	FALSE	LOW_COUNTS_INDEP_FILTER	6.6	0.0537	0.1983	NA	NA	NA	7.9	0.0	7.1	6.9	7.8	9.7
E036	chr6	136270322	136270383	FALSE	LOW_COUNTS_INDEP_FILTER	6.6	0.0453	0.3388	NA	NA	NA	4.9	3.1	8.1	6.0	4.9	12.6
E037	chr6	136271918	136271994	TRUE	OK	25.0	0.0255	0.7811	0.9448	0.119	0.059	21.7	22.9	28.2	18.9	37.2	21.3
E038	chr6	136271994	136272076	TRUE	OK	1528.3	0.00104	0.3767	0.8156	0.056	0.028	1580.6	1386.8	1584.4	1637.1	1478.7	1502.5
E039	chr6	136272076	136272079	TRUE	OK	933.4	0.000893	0.07974	0.6766	0.108	0.054	986.0	790.4	952.8	970.0	951.9	949.4
E040	chr6	136273081	136273144	TRUE	OK	1219.2	0.00126	0.0616	0.6503	0.123	0.062	1295.6	995.8	1258.0	1280.7	1237.8	1247.2
E041	chr6	136273144	136273166	TRUE	OK	983.5	0.0035	0.2595	0.779	0.107	0.053	1083.6	752.8	1041.5	1038.5	987.1	997.8
E042	chr6	136273166	136273187	TRUE	OK	948.4	0.00445	0.2984	0.7914	0.107	0.054	1058.0	711.1	1005.2	1009.7	949.9	956.2
E043	chr6	136273187	136273550	TRUE	OK	38.6	0.00936	0.2441	0.7737	-0.289	-0.145	41.4	38.6	48.3	35.7	42.1	25.1
E044	chr6	136273962	136274189	TRUE	OK	29.0	0.0135	0.9374	0.9852	-0.029	-0.015	38.5	20.9	29.2	33.8	19.6	31.9
E045	chr6	136275531	136275554	TRUE	OK	906.9	0.00705	0.461	0.8432	0.084	0.042	1054.0	652.7	966.9	967.0	890.2	910.8
E046	chr6	136275554	136275701	TRUE	OK	1466.9	0.003	0.4779	0.8488	0.058	0.029	1613.1	1165.8	1586.4	1541.8	1432.7	1461.9
E047	chr6	136275842	136275989	TRUE	OK	1502.2	0.00258	0.1089	0.7068	0.135	0.067	1652.6	1178.3	1529.0	1573.6	1497.3	1582.7
E048	chr6	136275989	136276467	TRUE	OK	2072.6	0.00148	0.09728	0.6964	0.112	0.056	2255.0	1758.0	2054.7	2084.9	2055.5	2227.6
E049	chr6	136276467	136276508	TRUE	OK	317.3	0.00784	0.969	0.9926	-0.001	-0.000	290.9	283.6	387.8	298.8	339.8	302.6
E050	chr6	136277864	136278103	TRUE	OK	778.9	0.00694	0.4489	0.8391	0.087	0.044	883.5	557.9	852.1	784.3	778.5	817.0
E051	chr6	136278103	136278770	TRUE	OK	2653.2	0.021	0.2564	0.7777	0.219	0.109	3160.2	1566.2	2798.1	2913.8	2656.8	2824.1
E052	chr6	136278770	136278776	TRUE	OK	679.2	0.0283	0.08842	0.6871	0.403	0.201	773.0	324.3	688.9	778.3	729.6	781.2
E053	chr6	136279482	136279762	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.108	0.601	NA	NA	NA	3.0	0.0	3.0	0.0	2.0	1.9
E054	chr6	136279762	136279866	TRUE	OK	946.3	0.0318	0.2382	0.7716	0.265	0.133	1118.1	464.0	1039.5	1054.3	946.0	1055.8
E055	chr6	136279866	136279876	TRUE	OK	673.7	0.0309	0.4293	0.8327	0.151	0.076	802.6	346.2	791.7	724.7	626.7	750.3
E056	chr6	136282583	136282687	TRUE	OK	965.2	0.0308	0.4831	0.8504	0.130	0.065	1182.2	510.9	1110.0	1077.2	858.8	1051.9
E057	chr6	136289712	136289781	TRUE	OK	745.5	0.0311	0.5379	0.8682	0.109	0.055	939.7	398.3	841.0	826.0	637.5	830.5
E058	chr6	136289781	136289784	TRUE	OK	331.3	0.0281	0.5864	0.8835	0.081	0.041	424.0	177.3	375.7	359.4	295.7	355.8
E059	chr6	136289784	136289787	TRUE	OK	323.7	0.0271	0.6261	0.8965	0.065	0.032	417.1	176.2	366.6	345.5	287.9	349.0
E060	chr6	136289787	136289795	TRUE	OK	317.3	0.0271	0.6056	0.8897	0.074	0.037	405.2	172.0	360.6	341.5	282.0	342.3
E061	chr6	136289795	136289829	TRUE	OK	293.4	0.024	0.5843	0.8827	0.081	0.041	372.7	163.7	328.4	317.7	264.4	313.3
E062	chr6	136289829	136289841	TRUE	OK	123.6	0.0402	0.6578	0.9068	0.066	0.033	160.7	57.3	148.1	149.9	107.7	118.0
E063	chr6	136289841	136289844	FALSE	LOW_COUNTS_INDEP_FILTER	4.8	0.107	0.4108	NA	NA	NA	6.9	1.0	10.1	6.0	2.0	2.9
E064	chr6	136289844	136289847	FALSE	LOW_COUNTS_INDEP_FILTER	4.0	0.245	0.1929	NA	NA	NA	4.9	2.1	10.1	6.0	0.0	1.0
E065	chr6	136289847	136289851	FALSE	LOW_COUNTS_INDEP_FILTER	3.8	0.205	0.1338	NA	NA	NA	4.9	2.1	10.1	5.0	0.0	1.0
J066	chr6	136258525	136261029	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.267	1	NA	NA	NA	1.0	0.0	0.0	0.0	1.0	0.0
J067	chr6	136261115	136261264	TRUE	OK	1092.2	0.00191	0.5823	0.882	-0.043	-0.022	1218.7	1075.0	1064.6	1085.1	1008.7	1101.2
J068	chr6	136261477	136267028	TRUE	OK	885.4	0.00103	0.005123	0.2992	0.187	0.093	927.8	768.5	823.9	910.4	930.3	951.4
J069	chr6	136261477	136268161	TRUE	OK	558.5	0.000905	0.04103	0.5972	0.146	0.073	552.2	509.9	548.9	610.6	561.1	568.5
J070	chr6	136267175	136268161	TRUE	OK	765.0	0.00179	0.2466	0.7744	0.099	0.050	771.1	715.3	757.4	784.3	717.8	844.0
J071	chr6	136268273	136269436	TRUE	OK	10.2	0.0126	0.07713	0.674	-0.741	-0.370	9.9	15.6	13.1	6.0	8.8	7.7
J072	chr6	136268339	136269140	TRUE	OK	29.0	0.00447	0.8976	0.9755	-0.031	-0.016	29.6	29.2	30.2	31.8	23.5	30.0
J073	chr6	136268339	136269436	TRUE	OK	1068.4	0.000609	5.888e-07	0.0005416	0.275	0.138	1071.8	885.3	993.1	1142.7	1119.3	1197.9
J074	chr6	136269303	136269436	TRUE	OK	24.9	0.00599	0.3652	0.8121	-0.246	-0.123	29.6	24.0	28.2	23.8	27.4	16.4
J075	chr6	136269612	136270322	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0629	0.9904	NA	NA	NA	1.0	1.0	2.0	1.0	1.0	1.9
J076	chr6	136269612	136271994	TRUE	OK	1160.8	0.00138	0.706	0.9216	0.030	0.015	1178.3	1113.6	1193.6	1225.1	1087.0	1167.0
J077	chr6	136270383	136271994	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0982	0.3938	NA	NA	NA	0.0	1.0	2.0	1.0	1.0	3.9
J078	chr6	136272076	136273081	FALSE	LOW_COUNTS_INDEP_FILTER	8.2	0.036	0.1874	NA	NA	NA	9.9	4.2	5.0	13.9	4.9	11.6
J079	chr6	136272079	136273081	TRUE	OK	924.0	0.000563	0.05279	0.6325	0.105	0.053	977.1	778.9	947.8	961.0	936.2	942.7
J080	chr6	136273187	136273962	TRUE	OK	11.8	0.0144	0.3398	0.804	-0.382	-0.191	17.7	10.4	12.1	9.9	5.9	14.5
J081	chr6	136273187	136275531	TRUE	OK	810.6	0.00502	0.2923	0.7894	0.114	0.057	918.0	593.3	854.1	853.8	813.8	830.5
J082	chr6	136274189	136275531	TRUE	OK	11.1	0.0138	0.7363	0.9316	-0.142	-0.071	15.8	7.3	12.1	14.9	7.8	8.7
J083	chr6	136275701	136275842	TRUE	OK	897.0	0.00143	0.9222	0.9818	0.004	0.002	965.3	762.2	988.1	947.1	832.4	886.6
J084	chr6	136275989	136276467	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.0386	0.6789	NA	NA	NA	4.9	5.2	1.0	4.0	2.9	1.9
J085	chr6	136275989	136277864	TRUE	OK	30.1	0.0417	0.5958	0.8866	0.270	0.135	26.6	22.9	33.2	17.9	30.4	49.3
J086	chr6	136276508	136277864	TRUE	OK	306.7	0.00907	0.9787	0.9949	-0.003	-0.002	276.1	275.3	379.7	291.9	332.0	285.2
J087	chr6	136278770	136279762	TRUE	OK	35.9	0.0115	0.8264	0.9569	-0.079	-0.039	41.4	21.9	48.3	35.7	36.2	31.9
J088	chr6	136278776	136279762	TRUE	OK	659.2	0.0292	0.08434	0.6825	0.418	0.209	740.5	313.9	668.8	749.6	714.9	767.7
J089	chr6	136279876	136282583	TRUE	OK	599.2	0.0349	0.5002	0.8557	0.127	0.063	722.7	304.5	713.1	642.3	539.6	672.9
J090	chr6	136282687	136289712	TRUE	OK	739.4	0.0332	0.5548	0.8732	0.107	0.053	933.8	394.1	835.0	819.1	629.7	824.7

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000029363.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE