Raw Counts Table (ENSG00000011198.9)
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC
(yes/no) | log2FCvst
(yes/no) | Raw Counts |
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 |
| E001 | chr3 | 43690107 | 43690112 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0436 | 0.3006 | NA | NA | NA | 2.0 | 3.0 | 0.0 | 5.0 | 5.0 | 5.0 |
| E002 | chr3 | 43690112 | 43690202 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.2 | 0.0178 | 0.03986 | NA | NA | NA | 5.0 | 4.0 | 2.0 | 11.0 | 14.0 | 14.0 |
| E003 | chr3 | 43690380 | 43690710 | TRUE | OK | 13.0 | 0.016 | 0.002339 | 0.208 | 1.336 | 0.668 | 8.0 | 3.0 | 4.0 | 25.0 | 21.0 | 18.0 |
| E004 | chr3 | 43690869 | 43690879 | TRUE | OK | 15.8 | 0.041 | 0.2531 | 0.7765 | -0.487 | -0.244 | 16.0 | 15.0 | 12.0 | 25.0 | 18.0 | 9.0 |
| E005 | chr3 | 43690879 | 43690891 | TRUE | OK | 20.1 | 0.0206 | 0.7515 | 0.9356 | -0.107 | -0.054 | 15.0 | 18.0 | 14.0 | 32.0 | 24.0 | 18.0 |
| E006 | chr3 | 43690891 | 43690892 | TRUE | OK | 19.7 | 0.0222 | 0.6736 | 0.9114 | -0.147 | -0.074 | 15.0 | 18.0 | 14.0 | 32.0 | 22.0 | 18.0 |
| E007 | chr3 | 43690892 | 43690899 | TRUE | OK | 20.9 | 0.0209 | 0.9339 | 0.9844 | 0.036 | 0.018 | 14.0 | 18.0 | 14.0 | 35.0 | 23.0 | 22.0 |
| E008 | chr3 | 43690899 | 43690905 | TRUE | OK | 23.8 | 0.0211 | 0.8309 | 0.958 | -0.067 | -0.034 | 20.0 | 20.0 | 15.0 | 39.0 | 27.0 | 23.0 |
| E009 | chr3 | 43690905 | 43690950 | TRUE | OK | 63.6 | 0.00364 | 0.3744 | 0.8148 | -0.164 | -0.082 | 59.0 | 45.0 | 49.0 | 74.0 | 75.0 | 83.0 |
| E010 | chr3 | 43690950 | 43690968 | TRUE | OK | 127.2 | 0.00326 | 0.9639 | 0.9917 | -0.008 | -0.004 | 111.0 | 82.0 | 94.0 | 148.0 | 154.0 | 182.0 |
| E011 | chr3 | 43690968 | 43690971 | TRUE | OK | 139.6 | 0.00306 | 0.6989 | 0.9195 | 0.052 | 0.026 | 114.0 | 85.0 | 108.0 | 168.0 | 171.0 | 200.0 |
| E012 | chr3 | 43690971 | 43690983 | TRUE | OK | 149.2 | 0.00361 | 0.5549 | 0.8732 | 0.084 | 0.042 | 123.0 | 90.0 | 111.0 | 172.0 | 187.0 | 222.0 |
| E013 | chr3 | 43690983 | 43691039 | TRUE | OK | 351.5 | 0.00645 | 0.2287 | 0.7685 | 0.180 | 0.090 | 262.0 | 202.0 | 271.0 | 439.0 | 422.0 | 536.0 |
| E014 | chr3 | 43691093 | 43691256 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0796 | 0.3016 | NA | NA | NA | 1.0 | 2.0 | 3.0 | 3.0 | 1.0 | 1.0 |
| E015 | chr3 | 43691256 | 43691509 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0481 | 0.3848 | NA | NA | NA | 4.0 | 3.0 | 3.0 | 4.0 | 6.0 | 1.0 |
| E016 | chr3 | 43694902 | 43695153 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.0841 | 0.06166 | NA | NA | NA | 0.0 | 1.0 | 6.0 | 11.0 | 9.0 | 10.0 |
| E017 | chr3 | 43699275 | 43699361 | TRUE | OK | 675.5 | 0.00636 | 0.1552 | 0.7368 | 0.192 | 0.096 | 514.0 | 373.0 | 528.0 | 895.0 | 870.0 | 915.0 |
| E018 | chr3 | 43699361 | 43699501 | TRUE | OK | 40.0 | 0.0131 | 0.9414 | 0.9862 | -0.031 | -0.015 | 26.0 | 23.0 | 42.0 | 52.0 | 54.0 | 45.0 |
| E019 | chr3 | 43699501 | 43699533 | TRUE | OK | 10.1 | 0.0305 | 0.7695 | 0.9411 | 0.165 | 0.083 | 5.0 | 8.0 | 8.0 | 7.0 | 14.0 | 19.0 |
| E020 | chr3 | 43699533 | 43699745 | TRUE | OK | 13.2 | 0.0234 | 0.6425 | 0.9018 | -0.178 | -0.089 | 11.0 | 8.0 | 13.0 | 8.0 | 20.0 | 20.0 |
| E021 | chr3 | 43701911 | 43702008 | TRUE | OK | 25.1 | 0.00885 | 0.6161 | 0.8931 | -0.146 | -0.073 | 27.0 | 16.0 | 17.0 | 24.0 | 32.0 | 36.0 |
| E022 | chr3 | 43702214 | 43702386 | TRUE | OK | 826.1 | 0.00417 | 0.08308 | 0.6811 | 0.196 | 0.098 | 621.0 | 474.0 | 637.0 | 1066.0 | 1086.0 | 1124.0 |
| E023 | chr3 | 43702386 | 43702584 | TRUE | OK | 832.3 | 0.00817 | 0.6053 | 0.8897 | 0.068 | 0.034 | 709.0 | 474.0 | 647.0 | 1069.0 | 1022.0 | 1124.0 |
| E024 | chr3 | 43702584 | 43702587 | TRUE | OK | 547.9 | 0.00807 | 0.3757 | 0.8152 | 0.126 | 0.063 | 460.0 | 291.0 | 425.0 | 673.0 | 709.0 | 765.0 |
| E025 | chr3 | 43707653 | 43707771 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.227 | 0.6573 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 1.0 |
| E026 | chr3 | 43711708 | 43711863 | TRUE | OK | 866.6 | 0.00933 | 0.4396 | 0.8361 | 0.111 | 0.056 | 758.0 | 470.0 | 650.0 | 1050.0 | 1154.0 | 1174.0 |
| E027 | chr3 | 43714946 | 43714956 | TRUE | OK | 420.5 | 0.00932 | 0.933 | 0.9842 | -0.034 | -0.017 | 411.0 | 245.0 | 304.0 | 491.0 | 565.0 | 533.0 |
| E028 | chr3 | 43714956 | 43715058 | TRUE | OK | 622.3 | 0.00791 | 0.7173 | 0.9252 | 0.045 | 0.023 | 574.0 | 370.0 | 434.0 | 707.0 | 866.0 | 822.0 |
| E029 | chr3 | 43717670 | 43717765 | TRUE | OK | 611.2 | 0.00464 | 0.1992 | 0.7573 | 0.162 | 0.081 | 502.0 | 373.0 | 418.0 | 677.0 | 871.0 | 866.0 |
| E030 | chr3 | 43717765 | 43717857 | TRUE | OK | 553.8 | 0.00525 | 0.2492 | 0.7752 | 0.160 | 0.080 | 436.0 | 351.0 | 384.0 | 607.0 | 735.0 | 846.0 |
| E031 | chr3 | 43718442 | 43718561 | TRUE | OK | 794.7 | 0.00243 | 0.9728 | 0.9935 | -0.000 | -0.000 | 643.0 | 569.0 | 573.0 | 883.0 | 1046.0 | 1099.0 |
| E032 | chr3 | 43718561 | 43718606 | TRUE | OK | 562.7 | 0.0018 | 0.2087 | 0.761 | -0.112 | -0.056 | 471.0 | 432.0 | 414.0 | 652.0 | 705.0 | 731.0 |
| E033 | chr3 | 43718606 | 43718762 | TRUE | OK | 675.2 | 0.00107 | 0.27 | 0.7823 | -0.083 | -0.042 | 567.0 | 484.0 | 512.0 | 805.0 | 860.0 | 859.0 |
| E034 | chr3 | 43718762 | 43718797 | TRUE | OK | 230.7 | 0.00486 | 0.7149 | 0.9245 | 0.043 | 0.021 | 202.0 | 132.0 | 176.0 | 299.0 | 294.0 | 295.0 |
| E035 | chr3 | 43718797 | 43719013 | TRUE | OK | 322.5 | 0.00148 | 0.592 | 0.8853 | -0.052 | -0.026 | 271.0 | 216.0 | 253.0 | 381.0 | 426.0 | 406.0 |
| E036 | chr3 | 43719013 | 43719541 | TRUE | OK | 629.9 | 0.00108 | 0.07428 | 0.6693 | -0.134 | -0.067 | 521.0 | 472.0 | 492.0 | 722.0 | 817.0 | 787.0 |
| E037 | chr3 | 43719541 | 43719826 | TRUE | OK | 285.4 | 0.00689 | 0.365 | 0.812 | -0.146 | -0.073 | 235.0 | 248.0 | 195.0 | 345.0 | 348.0 | 354.0 |
| E038 | chr3 | 43719826 | 43719837 | TRUE | OK | 94.6 | 0.00675 | 0.8065 | 0.9516 | 0.046 | 0.023 | 65.0 | 76.0 | 67.0 | 131.0 | 119.0 | 114.0 |
| E039 | chr3 | 43719837 | 43719905 | TRUE | OK | 121.7 | 0.00373 | 0.8719 | 0.9689 | -0.026 | -0.013 | 99.0 | 92.0 | 85.0 | 161.0 | 152.0 | 147.0 |
| E040 | chr3 | 43719905 | 43720811 | TRUE | OK | 387.4 | 0.00299 | 0.2265 | 0.7676 | -0.133 | -0.067 | 303.0 | 316.0 | 296.0 | 439.0 | 479.0 | 510.0 |
| E041 | chr3 | 43720811 | 43722725 | TRUE | OK | 307.5 | 0.0141 | 0.152 | 0.7355 | -0.313 | -0.156 | 224.0 | 309.0 | 243.0 | 340.0 | 352.0 | 388.0 |
| E042 | chr3 | 43733879 | 43733963 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.4 | 0.0184 | 0.1185 | NA | NA | NA | 5.0 | 3.0 | 5.0 | 10.0 | 12.0 | 16.0 |
| E043 | chr3 | 43733963 | 43734049 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.3 | 0.0257 | 0.4595 | NA | NA | NA | 6.0 | 7.0 | 6.0 | 5.0 | 7.0 | 13.0 |
| E044 | chr3 | 43734049 | 43734358 | TRUE | OK | 24.8 | 0.0136 | 0.4539 | 0.8406 | 0.237 | 0.119 | 11.0 | 21.0 | 18.0 | 32.0 | 29.0 | 39.0 |
| E045 | chr3 | 43734358 | 43734364 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.122 | 0.01615 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 4.0 | 1.0 | 4.0 |
| E046 | chr3 | 43734364 | 43734371 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.122 | 0.01615 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 4.0 | 1.0 | 4.0 |
| J047 | chr3 | 43690202 | 43690380 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0531 | 0.003043 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 5.0 | 5.0 |
| J048 | chr3 | 43690202 | 43699275 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.3 | 0.0268 | 0.308 | NA | NA | NA | 5.0 | 1.0 | 1.0 | 7.0 | 5.0 | 7.0 |
| J049 | chr3 | 43690710 | 43699275 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.394 | 0.2921 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 17.0 | 3.0 | 1.0 |
| J050 | chr3 | 43691039 | 43694902 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.124 | 0.5292 | NA | NA | NA | 0.0 | 0.0 | 3.0 | 4.0 | 2.0 | 2.0 |
| J051 | chr3 | 43691039 | 43699275 | TRUE | OK | 341.1 | 0.00657 | 0.1941 | 0.7558 | 0.197 | 0.098 | 252.0 | 194.0 | 262.0 | 422.0 | 411.0 | 528.0 |
| J052 | chr3 | 43691509 | 43699275 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0779 | 0.7975 | NA | NA | NA | 3.0 | 1.0 | 0.0 | 4.0 | 3.0 | 1.0 |
| J053 | chr3 | 43695153 | 43699275 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0377 | 0.1382 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 5.0 | 5.0 | 3.0 |
| J054 | chr3 | 43699361 | 43699501 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.81 | 0.516 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 |
| J055 | chr3 | 43699361 | 43702214 | TRUE | OK | 573.8 | 0.00567 | 0.1044 | 0.702 | 0.212 | 0.106 | 427.0 | 312.0 | 451.0 | 756.0 | 757.0 | 776.0 |
| J056 | chr3 | 43699361 | 43702386 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.3726 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J057 | chr3 | 43699361 | 43711708 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.267 | 0.7234 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| J058 | chr3 | 43699533 | 43701911 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.8352 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J059 | chr3 | 43702008 | 43702214 | TRUE | OK | 10.3 | 0.0104 | 0.2366 | 0.7712 | -0.483 | -0.242 | 12.0 | 9.0 | 7.0 | 9.0 | 13.0 | 12.0 |
| J060 | chr3 | 43702587 | 43707653 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.556 | 0.833 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| J061 | chr3 | 43702587 | 43711708 | TRUE | OK | 543.0 | 0.00838 | 0.3406 | 0.8042 | 0.138 | 0.069 | 458.0 | 285.0 | 417.0 | 666.0 | 705.0 | 763.0 |
| J062 | chr3 | 43707771 | 43711708 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.264 | 0.4262 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 |
| J063 | chr3 | 43711863 | 43714946 | TRUE | OK | 393.1 | 0.00884 | 0.991 | 0.9978 | -0.021 | -0.011 | 383.0 | 228.0 | 282.0 | 459.0 | 520.0 | 511.0 |
| J064 | chr3 | 43711863 | 43717670 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.5 | 0.0404 | 0.003856 | NA | NA | NA | 4.0 | 0.0 | 0.0 | 7.0 | 13.0 | 10.0 |
| J065 | chr3 | 43715058 | 43717670 | TRUE | OK | 379.2 | 0.00546 | 0.1599 | 0.7389 | 0.195 | 0.097 | 313.0 | 213.0 | 263.0 | 424.0 | 564.0 | 524.0 |
| J066 | chr3 | 43715058 | 43717765 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.2 | 0.014 | 0.3379 | NA | NA | NA | 9.0 | 4.0 | 4.0 | 11.0 | 17.0 | 11.0 |
| J067 | chr3 | 43715058 | 43718442 | TRUE | OK | 18.0 | 0.00673 | 5.665e-05 | 0.02077 | -1.253 | -0.627 | 23.0 | 22.0 | 18.0 | 14.0 | 13.0 | 18.0 |
| J068 | chr3 | 43717857 | 43718442 | TRUE | OK | 406.9 | 0.0063 | 0.2216 | 0.7653 | 0.187 | 0.094 | 324.0 | 251.0 | 274.0 | 434.0 | 556.0 | 630.0 |
| J069 | chr3 | 43718561 | 43733879 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.6 | 0.0626 | 0.2345 | NA | NA | NA | 2.0 | 2.0 | 1.0 | 6.0 | 2.0 | 9.0 |
| J070 | chr3 | 43718561 | 43734049 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.9 | 0.0578 | 0.8489 | NA | NA | NA | 3.0 | 7.0 | 9.0 | 15.0 | 6.0 | 14.0 |
| J071 | chr3 | 43733963 | 43734049 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N072 | chr3 | 43699361 | 43701911 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.0117 | 0.2204 | NA | NA | NA | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 12.0 |
| Color Codes |
|---|
|
NO TEST
|
p > 0.05
|
p < 0.05
|
p < 0.005
|
p < 5e-04
|
p < 5e-05
|