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Normalized Counts Table (ENSG00000011198.9)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr3	43690107	43690112	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.0436	0.3006	NA	NA	NA	2.0	3.1	0.0	5.0	4.9	4.8
E002	chr3	43690112	43690202	FALSE	LOW_COUNTS_INDEP_FILTER	8.2	0.0178	0.03986	NA	NA	NA	4.9	4.2	2.0	10.9	13.7	13.5
E003	chr3	43690380	43690710	TRUE	OK	13.0	0.016	0.002339	0.208	1.336	0.668	7.9	3.1	4.0	24.8	20.6	17.4
E004	chr3	43690869	43690879	TRUE	OK	15.8	0.041	0.2531	0.7765	-0.487	-0.244	15.8	15.6	12.1	24.8	17.6	8.7
E005	chr3	43690879	43690891	TRUE	OK	20.1	0.0206	0.7515	0.9356	-0.107	-0.054	14.8	18.8	14.1	31.8	23.5	17.4
E006	chr3	43690891	43690892	TRUE	OK	19.7	0.0222	0.6736	0.9114	-0.147	-0.074	14.8	18.8	14.1	31.8	21.5	17.4
E007	chr3	43690892	43690899	TRUE	OK	20.9	0.0209	0.9339	0.9844	0.036	0.018	13.8	18.8	14.1	34.7	22.5	21.3
E008	chr3	43690899	43690905	TRUE	OK	23.8	0.0211	0.8309	0.958	-0.067	-0.034	19.7	20.9	15.1	38.7	26.4	22.2
E009	chr3	43690905	43690950	TRUE	OK	63.6	0.00364	0.3744	0.8148	-0.164	-0.082	58.2	46.9	49.4	73.5	73.4	80.2
E010	chr3	43690950	43690968	TRUE	OK	127.2	0.00326	0.9639	0.9917	-0.008	-0.004	109.4	85.5	94.7	146.9	150.8	176.0
E011	chr3	43690968	43690971	TRUE	OK	139.6	0.00306	0.6989	0.9195	0.052	0.026	112.4	88.6	108.8	166.8	167.5	193.4
E012	chr3	43690971	43690983	TRUE	OK	149.2	0.00361	0.5549	0.8732	0.084	0.042	121.3	93.8	111.8	170.8	183.1	214.6
E013	chr3	43690983	43691039	TRUE	OK	351.5	0.00645	0.2287	0.7685	0.180	0.090	258.3	210.6	273.0	435.8	413.3	518.2
E014	chr3	43691093	43691256	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0796	0.3016	NA	NA	NA	1.0	2.1	3.0	3.0	1.0	1.0
E015	chr3	43691256	43691509	FALSE	LOW_COUNTS_INDEP_FILTER	3.5	0.0481	0.3848	NA	NA	NA	3.9	3.1	3.0	4.0	5.9	1.0
E016	chr3	43694902	43695153	FALSE	LOW_COUNTS_INDEP_FILTER	6.1	0.0841	0.06166	NA	NA	NA	0.0	1.0	6.0	10.9	8.8	9.7
E017	chr3	43699275	43699361	TRUE	OK	675.5	0.00636	0.1552	0.7368	0.192	0.096	506.8	388.9	531.8	888.5	852.0	884.7
E018	chr3	43699361	43699501	TRUE	OK	40.0	0.0131	0.9414	0.9862	-0.031	-0.015	25.6	24.0	42.3	51.6	52.9	43.5
E019	chr3	43699501	43699533	TRUE	OK	10.1	0.0305	0.7695	0.9411	0.165	0.083	4.9	8.3	8.1	6.9	13.7	18.4
E020	chr3	43699533	43699745	TRUE	OK	13.2	0.0234	0.6425	0.9018	-0.178	-0.089	10.8	8.3	13.1	7.9	19.6	19.3
E021	chr3	43701911	43702008	TRUE	OK	25.1	0.00885	0.6161	0.8931	-0.146	-0.073	26.6	16.7	17.1	23.8	31.3	34.8
E022	chr3	43702214	43702386	TRUE	OK	826.1	0.00417	0.08308	0.6811	0.196	0.098	612.3	494.2	641.6	1058.3	1063.5	1086.7
E023	chr3	43702386	43702584	TRUE	OK	832.3	0.00817	0.6053	0.8897	0.068	0.034	699.1	494.2	651.7	1061.3	1000.8	1086.7
E024	chr3	43702584	43702587	TRUE	OK	547.9	0.00807	0.3757	0.8152	0.126	0.063	453.6	303.4	428.1	668.1	694.3	739.6
E025	chr3	43707653	43707771	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.227	0.6573	NA	NA	NA	0.0	0.0	1.0	2.0	0.0	1.0
E026	chr3	43711708	43711863	TRUE	OK	866.6	0.00933	0.4396	0.8361	0.111	0.056	747.4	490.1	654.7	1042.4	1130.1	1135.1
E027	chr3	43714946	43714956	TRUE	OK	420.5	0.00932	0.933	0.9842	-0.034	-0.017	405.2	255.5	306.2	487.5	553.3	515.3
E028	chr3	43714956	43715058	TRUE	OK	622.3	0.00791	0.7173	0.9252	0.045	0.023	566.0	385.8	437.1	701.9	848.1	794.7
E029	chr3	43717670	43717765	TRUE	OK	611.2	0.00464	0.1992	0.7573	0.162	0.081	495.0	388.9	421.0	672.1	853.0	837.3
E030	chr3	43717765	43717857	TRUE	OK	553.8	0.00525	0.2492	0.7752	0.160	0.080	429.9	366.0	386.8	602.6	719.8	817.9
E031	chr3	43718442	43718561	TRUE	OK	794.7	0.00243	0.9728	0.9935	-0.000	-0.000	634.0	593.3	577.1	876.6	1024.3	1062.6
E032	chr3	43718561	43718606	TRUE	OK	562.7	0.0018	0.2087	0.761	-0.112	-0.056	464.4	450.5	417.0	647.3	690.4	706.8
E033	chr3	43718606	43718762	TRUE	OK	675.2	0.00107	0.27	0.7823	-0.083	-0.042	559.1	504.7	515.7	799.2	842.2	830.5
E034	chr3	43718762	43718797	TRUE	OK	230.7	0.00486	0.7149	0.9245	0.043	0.021	199.2	137.6	177.3	296.8	287.9	285.2
E035	chr3	43718797	43719013	TRUE	OK	322.5	0.00148	0.592	0.8853	-0.052	-0.026	267.2	225.2	254.8	378.3	417.2	392.5
E036	chr3	43719013	43719541	TRUE	OK	629.9	0.00108	0.07428	0.6693	-0.134	-0.067	513.7	492.2	495.6	716.8	800.1	760.9
E037	chr3	43719541	43719826	TRUE	OK	285.4	0.00689	0.365	0.812	-0.146	-0.073	231.7	258.6	196.4	342.5	340.8	342.3
E038	chr3	43719826	43719837	TRUE	OK	94.6	0.00675	0.8065	0.9516	0.046	0.023	64.1	79.2	67.5	130.1	116.5	110.2
E039	chr3	43719837	43719905	TRUE	OK	121.7	0.00373	0.8719	0.9689	-0.026	-0.013	97.6	95.9	85.6	159.8	148.9	142.1
E040	chr3	43719905	43720811	TRUE	OK	387.4	0.00299	0.2265	0.7676	-0.133	-0.067	298.8	329.5	298.1	435.8	469.1	493.1
E041	chr3	43720811	43722725	TRUE	OK	307.5	0.0141	0.152	0.7355	-0.313	-0.156	220.9	322.2	244.8	337.5	344.7	375.1
E042	chr3	43733879	43733963	FALSE	LOW_COUNTS_INDEP_FILTER	8.4	0.0184	0.1185	NA	NA	NA	4.9	3.1	5.0	9.9	11.8	15.5
E043	chr3	43733963	43734049	FALSE	LOW_COUNTS_INDEP_FILTER	7.3	0.0257	0.4595	NA	NA	NA	5.9	7.3	6.0	5.0	6.9	12.6
E044	chr3	43734049	43734358	TRUE	OK	24.8	0.0136	0.4539	0.8406	0.237	0.119	10.8	21.9	18.1	31.8	28.4	37.7
E045	chr3	43734358	43734364	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.122	0.01615	NA	NA	NA	0.0	0.0	0.0	4.0	1.0	3.9
E046	chr3	43734364	43734371	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.122	0.01615	NA	NA	NA	0.0	0.0	0.0	4.0	1.0	3.9
J047	chr3	43690202	43690380	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0531	0.003043	NA	NA	NA	0.0	0.0	0.0	2.0	4.9	4.8
J048	chr3	43690202	43699275	FALSE	LOW_COUNTS_INDEP_FILTER	4.3	0.0268	0.308	NA	NA	NA	4.9	1.0	1.0	6.9	4.9	6.8
J049	chr3	43690710	43699275	FALSE	LOW_COUNTS_INDEP_FILTER	4.0	0.394	0.2921	NA	NA	NA	0.0	1.0	2.0	16.9	2.9	1.0
J050	chr3	43691039	43694902	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.124	0.5292	NA	NA	NA	0.0	0.0	3.0	4.0	2.0	1.9
J051	chr3	43691039	43699275	TRUE	OK	341.1	0.00657	0.1941	0.7558	0.197	0.098	248.5	202.3	263.9	419.0	402.5	510.5
J052	chr3	43691509	43699275	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0779	0.7975	NA	NA	NA	3.0	1.0	0.0	4.0	2.9	1.0
J053	chr3	43695153	43699275	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.0377	0.1382	NA	NA	NA	0.0	1.0	2.0	5.0	4.9	2.9
J054	chr3	43699361	43699501	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.81	0.516	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	2.9
J055	chr3	43699361	43702214	TRUE	OK	573.8	0.00567	0.1044	0.702	0.212	0.106	421.0	325.3	454.3	750.5	741.3	750.3
J056	chr3	43699361	43702386	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.558	0.3726	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
J057	chr3	43699361	43711708	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.267	0.7234	NA	NA	NA	1.0	0.0	0.0	0.0	1.0	0.0
J058	chr3	43699533	43701911	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.565	0.8352	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J059	chr3	43702008	43702214	TRUE	OK	10.3	0.0104	0.2366	0.7712	-0.483	-0.242	11.8	9.4	7.1	8.9	12.7	11.6
J060	chr3	43702587	43707653	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.556	0.833	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J061	chr3	43702587	43711708	TRUE	OK	543.0	0.00838	0.3406	0.8042	0.138	0.069	451.6	297.2	420.0	661.2	690.4	737.7
J062	chr3	43707771	43711708	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.264	0.4262	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	1.0
J063	chr3	43711863	43714946	TRUE	OK	393.1	0.00884	0.991	0.9978	-0.021	-0.011	377.6	237.7	284.0	455.7	509.2	494.1
J064	chr3	43711863	43717670	FALSE	LOW_COUNTS_INDEP_FILTER	5.5	0.0404	0.003856	NA	NA	NA	3.9	0.0	0.0	6.9	12.7	9.7
J065	chr3	43715058	43717670	TRUE	OK	379.2	0.00546	0.1599	0.7389	0.195	0.097	308.6	222.1	264.9	420.9	552.3	506.6
J066	chr3	43715058	43717765	FALSE	LOW_COUNTS_INDEP_FILTER	9.2	0.014	0.3379	NA	NA	NA	8.9	4.2	4.0	10.9	16.6	10.6
J067	chr3	43715058	43718442	TRUE	OK	18.0	0.00673	5.665e-05	0.02077	-1.253	-0.627	22.7	22.9	18.1	13.9	12.7	17.4
J068	chr3	43717857	43718442	TRUE	OK	406.9	0.0063	0.2216	0.7653	0.187	0.094	319.5	261.7	276.0	430.9	544.5	609.1
J069	chr3	43718561	43733879	FALSE	LOW_COUNTS_INDEP_FILTER	3.6	0.0626	0.2345	NA	NA	NA	2.0	2.1	1.0	6.0	2.0	8.7
J070	chr3	43718561	43734049	FALSE	LOW_COUNTS_INDEP_FILTER	8.9	0.0578	0.8489	NA	NA	NA	3.0	7.3	9.1	14.9	5.9	13.5
J071	chr3	43733963	43734049	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N072	chr3	43699361	43701911	FALSE	LOW_COUNTS_INDEP_FILTER	8.6	0.0117	0.2204	NA	NA	NA	7.9	8.3	8.1	7.9	7.8	11.6

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000011198.9
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE