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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr16 | 85798632 | 85799068 | TRUE | OK | 511.8 | 0.00522 | 0.2511 | 0.7501 | 0.130 | 0.065 | 564.0 | 478.0 | 391.0 | 556.0 | 599.0 | 502.0 |
E002 | chr16 | 85799611 | 85799621 | TRUE | OK | 52.2 | 0.00458 | 0.6426 | 0.8986 | 0.079 | 0.039 | 62.0 | 49.0 | 38.0 | 57.0 | 63.0 | 47.0 |
E003 | chr16 | 85799621 | 85799637 | TRUE | OK | 110.9 | 0.00226 | 0.9848 | 0.9969 | -0.010 | -0.005 | 125.0 | 105.0 | 95.0 | 98.0 | 137.0 | 108.0 |
E004 | chr16 | 85799637 | 85799653 | TRUE | OK | 143.2 | 0.00214 | 0.9872 | 0.9976 | -0.007 | -0.004 | 155.0 | 145.0 | 119.0 | 121.0 | 181.0 | 141.0 |
E005 | chr16 | 85799653 | 85799682 | TRUE | OK | 271.9 | 0.00129 | 0.3384 | 0.7866 | 0.085 | 0.042 | 288.0 | 252.0 | 229.0 | 250.0 | 354.0 | 262.0 |
E006 | chr16 | 85799682 | 85799683 | TRUE | OK | 278.5 | 0.00139 | 0.4991 | 0.8473 | 0.060 | 0.030 | 295.0 | 264.0 | 236.0 | 247.0 | 361.0 | 272.0 |
E007 | chr16 | 85799683 | 85799692 | TRUE | OK | 344.0 | 0.00115 | 0.8575 | 0.9642 | 0.011 | 0.006 | 367.0 | 336.0 | 296.0 | 308.0 | 441.0 | 321.0 |
E008 | chr16 | 85799692 | 85799695 | TRUE | OK | 374.9 | 0.00119 | 0.9672 | 0.993 | 0.002 | 0.001 | 396.0 | 372.0 | 324.0 | 333.0 | 488.0 | 341.0 |
E009 | chr16 | 85799695 | 85799696 | TRUE | OK | 375.6 | 0.00119 | 0.9927 | 0.9989 | -0.001 | -0.001 | 397.0 | 373.0 | 325.0 | 333.0 | 488.0 | 342.0 |
E010 | chr16 | 85799696 | 85799697 | TRUE | OK | 393.4 | 0.00123 | 0.9075 | 0.9778 | -0.012 | -0.006 | 414.0 | 392.0 | 345.0 | 356.0 | 508.0 | 350.0 |
E011 | chr16 | 85799697 | 85799707 | TRUE | OK | 808.0 | 0.00105 | 0.1162 | 0.6561 | -0.116 | -0.058 | 917.0 | 802.0 | 735.0 | 724.0 | 959.0 | 731.0 |
E012 | chr16 | 85799707 | 85799752 | TRUE | OK | 5823.6 | 0.00283 | 0.08325 | 0.6087 | -0.168 | -0.084 | 7139.0 | 5713.0 | 5017.0 | 5338.0 | 6875.0 | 5114.0 |
E013 | chr16 | 85799752 | 85799759 | TRUE | OK | 18.7 | 0.0434 | 0.9739 | 0.9944 | -0.036 | -0.018 | 28.0 | 23.0 | 6.0 | 17.0 | 26.0 | 15.0 |
E014 | chr16 | 85799759 | 85799884 | TRUE | OK | 78.1 | 0.00374 | 0.913 | 0.9792 | 0.013 | 0.007 | 89.0 | 84.0 | 55.0 | 65.0 | 103.0 | 76.0 |
E015 | chr16 | 85801183 | 85801201 | TRUE | OK | 75.4 | 0.00799 | 0.9665 | 0.9928 | -0.006 | -0.003 | 97.0 | 62.0 | 63.0 | 62.0 | 89.0 | 83.0 |
E016 | chr16 | 85801201 | 85801204 | TRUE | OK | 1329.8 | 0.00225 | 0.02208 | 0.4034 | 0.182 | 0.091 | 1402.0 | 1258.0 | 996.0 | 1358.0 | 1689.0 | 1311.0 |
E017 | chr16 | 85801204 | 85801278 | TRUE | OK | 10589.2 | 0.00325 | 0.5325 | 0.8596 | -0.075 | -0.037 | 12349.0 | 10409.0 | 8752.0 | 9817.0 | 12920.0 | 9677.0 |
E018 | chr16 | 85803056 | 85804539 | TRUE | OK | 167.0 | 0.0404 | 0.5016 | 0.8483 | -0.264 | -0.132 | 260.0 | 150.0 | 135.0 | 145.0 | 125.0 | 206.0 |
E019 | chr16 | 85804539 | 85804661 | TRUE | OK | 59.9 | 0.00714 | 0.9408 | 0.9866 | -0.026 | -0.013 | 77.0 | 57.0 | 44.0 | 46.0 | 73.0 | 66.0 |
E020 | chr16 | 85804661 | 85804936 | TRUE | OK | 209.2 | 0.00445 | 8.582e-20 | 3.369e-16 | 1.285 | 0.642 | 120.0 | 122.0 | 107.0 | 270.0 | 332.0 | 296.0 |
E021 | chr16 | 85804936 | 85804940 | TRUE | OK | 10381.3 | 0.00349 | 0.5378 | 0.8615 | -0.076 | -0.038 | 12161.0 | 10173.0 | 8580.0 | 9667.0 | 12653.0 | 9444.0 |
E022 | chr16 | 85804940 | 85804992 | TRUE | OK | 11574.4 | 0.00394 | 0.4409 | 0.8264 | -0.100 | -0.050 | 13484.0 | 11368.0 | 9675.0 | 10828.0 | 14016.0 | 10493.0 |
E023 | chr16 | 85804992 | 85805068 | TRUE | OK | 12522.4 | 0.00315 | 0.5644 | 0.8712 | -0.066 | -0.033 | 14443.0 | 12248.0 | 10409.0 | 11648.0 | 15511.0 | 11295.0 |
E024 | chr16 | 85805068 | 85805096 | TRUE | OK | 7189.3 | 0.00325 | 0.9096 | 0.9784 | -0.015 | -0.008 | 8502.0 | 6910.0 | 5802.0 | 6768.0 | 9083.0 | 6354.0 |
E025 | chr16 | 85805096 | 85805104 | TRUE | OK | 6387.5 | 0.00176 | 0.2698 | 0.7581 | -0.083 | -0.041 | 7559.0 | 6178.0 | 5402.0 | 5861.0 | 7953.0 | 5602.0 |
E026 | chr16 | 85805104 | 85805108 | TRUE | OK | 142.9 | 0.00247 | 0.484 | 0.8419 | -0.099 | -0.050 | 172.0 | 147.0 | 115.0 | 120.0 | 171.0 | 139.0 |
E027 | chr16 | 85805108 | 85805151 | TRUE | OK | 73.0 | 0.0107 | 0.5243 | 0.8567 | 0.113 | 0.056 | 89.0 | 75.0 | 43.0 | 69.0 | 87.0 | 80.0 |
E028 | chr16 | 85805151 | 85805153 | TRUE | OK | 61.9 | 0.00921 | 0.6448 | 0.8994 | 0.075 | 0.038 | 77.0 | 64.0 | 37.0 | 60.0 | 73.0 | 65.0 |
E029 | chr16 | 85805153 | 85805309 | TRUE | OK | 102.0 | 0.00845 | 0.5496 | 0.8656 | 0.091 | 0.045 | 118.0 | 97.0 | 75.0 | 101.0 | 110.0 | 116.0 |
E030 | chr16 | 85805309 | 85805328 | TRUE | OK | 56.1 | 0.015 | 0.4583 | 0.8323 | 0.166 | 0.083 | 57.0 | 51.0 | 46.0 | 61.0 | 54.0 | 69.0 |
E031 | chr16 | 85805328 | 85805350 | TRUE | OK | 57.0 | 0.0242 | 0.4015 | 0.8108 | 0.230 | 0.115 | 60.0 | 46.0 | 47.0 | 66.0 | 51.0 | 74.0 |
E032 | chr16 | 85805350 | 85805426 | TRUE | OK | 79.1 | 0.0182 | 0.1846 | 0.7138 | 0.320 | 0.160 | 81.0 | 64.0 | 60.0 | 96.0 | 78.0 | 98.0 |
E033 | chr16 | 85805426 | 85805621 | TRUE | OK | 130.2 | 0.0214 | 0.2321 | 0.7415 | 0.281 | 0.140 | 158.0 | 101.0 | 88.0 | 142.0 | 134.0 | 167.0 |
E034 | chr16 | 85805621 | 85805732 | TRUE | OK | 149.4 | 0.0158 | 0.02063 | 0.3923 | 0.493 | 0.246 | 174.0 | 103.0 | 89.0 | 177.0 | 184.0 | 178.0 |
E035 | chr16 | 85805732 | 85805742 | TRUE | OK | 6502.7 | 0.00128 | 0.234 | 0.7424 | -0.077 | -0.039 | 7583.0 | 6318.0 | 5535.0 | 5978.0 | 8096.0 | 5720.0 |
E036 | chr16 | 85805742 | 85805746 | TRUE | OK | 6426.7 | 0.00119 | 0.1775 | 0.7086 | -0.085 | -0.042 | 7500.0 | 6248.0 | 5496.0 | 5889.0 | 7975.0 | 5663.0 |
E037 | chr16 | 85805746 | 85805864 | TRUE | OK | 10217.1 | 0.00207 | 0.4228 | 0.8193 | -0.061 | -0.031 | 11824.0 | 9755.0 | 8716.0 | 9388.0 | 12947.0 | 8981.0 |
E038 | chr16 | 85805864 | 85806455 | TRUE | OK | 228.7 | 0.00713 | 0.1378 | 0.6773 | 0.214 | 0.107 | 256.0 | 198.0 | 167.0 | 239.0 | 265.0 | 257.0 |
E039 | chr16 | 85806455 | 85806737 | TRUE | OK | 259.4 | 0.00557 | 2.525e-05 | 0.005156 | 0.593 | 0.297 | 227.0 | 183.0 | 189.0 | 316.0 | 344.0 | 297.0 |
E040 | chr16 | 85806737 | 85806802 | TRUE | OK | 7600.4 | 0.00187 | 0.6879 | 0.9135 | 0.044 | 0.022 | 8478.0 | 7173.0 | 6372.0 | 6860.0 | 10203.0 | 6682.0 |
E041 | chr16 | 85806802 | 85806805 | TRUE | OK | 5528.8 | 0.00248 | 0.9228 | 0.9818 | 0.026 | 0.013 | 6184.0 | 5167.0 | 4714.0 | 4934.0 | 7514.0 | 4769.0 |
E042 | chr16 | 85806805 | 85806826 | TRUE | OK | 5684.9 | 0.00269 | 0.7814 | 0.9423 | 0.044 | 0.022 | 6312.0 | 5295.0 | 4828.0 | 5046.0 | 7799.0 | 4933.0 |
E043 | chr16 | 85806826 | 85806967 | TRUE | OK | 5595.2 | 0.00318 | 0.713 | 0.9213 | 0.058 | 0.029 | 6122.0 | 5205.0 | 4774.0 | 4979.0 | 7759.0 | 4815.0 |
E044 | chr16 | 85806967 | 85806968 | TRUE | OK | 1201.9 | 0.00395 | 0.1165 | 0.6564 | 0.200 | 0.100 | 1230.0 | 1127.0 | 918.0 | 1087.0 | 1808.0 | 1052.0 |
E045 | chr16 | 85806968 | 85806975 | TRUE | OK | 1113.3 | 0.00357 | 0.0859 | 0.6137 | 0.206 | 0.103 | 1144.0 | 1037.0 | 846.0 | 1020.0 | 1667.0 | 977.0 |
E046 | chr16 | 85806975 | 85807002 | TRUE | OK | 982.9 | 0.00366 | 0.1253 | 0.6657 | 0.188 | 0.094 | 1000.0 | 938.0 | 749.0 | 896.0 | 1463.0 | 860.0 |
E047 | chr16 | 85807002 | 85807031 | TRUE | OK | 3.2 | 0.0987 | 0.3286 | 0.7828 | 1.038 | 0.519 | 2.0 | 3.0 | 1.0 | 1.0 | 10.0 | 2.0 |
E048 | chr16 | 85807031 | 85807044 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.376 | 0.1706 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 7.0 | 0.0 |
J049 | chr16 | 85799068 | 85801204 | TRUE | OK | 7.2 | 0.14 | 0.3785 | 0.8017 | 0.734 | 0.367 | 9.0 | 3.0 | 4.0 | 7.0 | 4.0 | 17.0 |
J050 | chr16 | 85799752 | 85801183 | TRUE | OK | 45.1 | 0.00717 | 0.6951 | 0.9157 | -0.076 | -0.038 | 54.0 | 36.0 | 45.0 | 35.0 | 66.0 | 35.0 |
J051 | chr16 | 85799752 | 85801204 | TRUE | OK | 5758.4 | 0.00264 | 0.06994 | 0.5826 | -0.171 | -0.085 | 7066.0 | 5658.0 | 4960.0 | 5277.0 | 6782.0 | 5061.0 |
J052 | chr16 | 85799752 | 85804936 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.168 | 0.5727 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
J053 | chr16 | 85799884 | 85801204 | TRUE | OK | 61.4 | 0.00341 | 0.9678 | 0.9931 | -0.016 | -0.008 | 69.0 | 70.0 | 42.0 | 53.0 | 77.0 | 60.0 |
J054 | chr16 | 85801278 | 85804539 | TRUE | OK | 15.1 | 0.0128 | 0.8192 | 0.9531 | -0.080 | -0.040 | 22.0 | 16.0 | 8.0 | 11.0 | 23.0 | 12.0 |
J055 | chr16 | 85801278 | 85804936 | TRUE | OK | 10286.5 | 0.00316 | 0.5021 | 0.8484 | -0.078 | -0.039 | 12050.0 | 10090.0 | 8506.0 | 9562.0 | 12539.0 | 9358.0 |
J056 | chr16 | 85801278 | 85804940 | TRUE | OK | 46.4 | 0.00393 | 0.9794 | 0.9958 | -0.006 | -0.003 | 48.0 | 55.0 | 33.0 | 45.0 | 56.0 | 43.0 |
J057 | chr16 | 85804661 | 85804936 | TRUE | OK | 24.5 | 0.00547 | 0.6847 | 0.9126 | 0.109 | 0.055 | 30.0 | 20.0 | 19.0 | 23.0 | 37.0 | 19.0 |
J058 | chr16 | 85805104 | 85805732 | TRUE | OK | 5956.8 | 0.00107 | 0.08596 | 0.6138 | -0.100 | -0.050 | 7014.0 | 5800.0 | 5109.0 | 5413.0 | 7422.0 | 5184.0 |
J059 | chr16 | 85805108 | 85805746 | TRUE | OK | 80.3 | 0.00208 | 0.04538 | 0.5185 | -0.309 | -0.155 | 101.0 | 85.0 | 75.0 | 59.0 | 93.0 | 72.0 |
J060 | chr16 | 85805151 | 85805621 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.538 | 0.5754 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
J061 | chr16 | 85805153 | 85805732 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.7 | 0.396 | 0.4641 | NA | NA | NA | 1.0 | 4.0 | 0.0 | 7.0 | 4.0 | 0.0 |
J062 | chr16 | 85805864 | 85806455 | TRUE | OK | 9.1 | 0.0191 | 0.5177 | 0.8542 | 0.284 | 0.142 | 9.0 | 11.0 | 4.0 | 6.0 | 12.0 | 13.0 |
J063 | chr16 | 85805864 | 85806737 | TRUE | OK | 6065.2 | 0.00116 | 0.3795 | 0.802 | -0.047 | -0.023 | 6979.0 | 5808.0 | 5196.0 | 5508.0 | 7820.0 | 5249.0 |
J064 | chr16 | 85805864 | 85806826 | TRUE | OK | 11.1 | 0.00947 | 0.3192 | 0.779 | -0.391 | -0.196 | 13.0 | 14.0 | 10.0 | 6.0 | 13.0 | 11.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000131143.8 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |