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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr3 | 50558024 | 50558031 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E002 | chr3 | 50558031 | 50558810 | TRUE | OK | 21.3 | 0.108 | 0.002295 | 0.1312 | -2.156 | -1.078 | 67.0 | 23.0 | 30.0 | 2.0 | 9.0 | 3.0 |
| E003 | chr3 | 50558810 | 50559221 | TRUE | OK | 15.9 | 0.0182 | 8.075e-05 | 0.01294 | -1.860 | -0.930 | 33.0 | 22.0 | 30.0 | 3.0 | 6.0 | 3.0 |
| E004 | chr3 | 50559221 | 50559279 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0742 | 0.01134 | NA | NA | NA | 3.0 | 4.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E005 | chr3 | 50559279 | 50559282 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.152 | 0.06322 | NA | NA | NA | 1.0 | 4.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| E006 | chr3 | 50559282 | 50559453 | TRUE | OK | 4.5 | 0.0712 | 0.001148 | 0.08524 | -3.738 | -1.869 | 14.0 | 11.0 | 3.0 | 1.0 | 0.0 | 0.0 |
| E007 | chr3 | 50559453 | 50559524 | TRUE | OK | 6.5 | 0.0278 | 0.002638 | 0.142 | -2.159 | -1.079 | 17.0 | 14.0 | 6.0 | 2.0 | 1.0 | 1.0 |
| E008 | chr3 | 50559524 | 50559598 | TRUE | OK | 9.2 | 0.0263 | 4.544e-05 | 0.008188 | -2.740 | -1.370 | 24.0 | 21.0 | 9.0 | 2.0 | 1.0 | 1.0 |
| E009 | chr3 | 50559598 | 50559737 | TRUE | OK | 14.9 | 0.0114 | 1.269e-07 | 6.125e-05 | -2.656 | -1.328 | 33.0 | 30.0 | 22.0 | 3.0 | 3.0 | 1.0 |
| E010 | chr3 | 50560916 | 50561064 | TRUE | OK | 14.9 | 0.0201 | 2.697e-06 | 0.0008315 | -2.438 | -1.219 | 31.0 | 34.0 | 19.0 | 4.0 | 3.0 | 1.0 |
| E011 | chr3 | 50561721 | 50561747 | TRUE | OK | 7.3 | 0.0203 | 1.372e-05 | 0.003155 | -3.437 | -1.719 | 20.0 | 14.0 | 10.0 | 2.0 | 0.0 | 0.0 |
| E012 | chr3 | 50561747 | 50561911 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.144 | 0.0977 | NA | NA | NA | 4.0 | 1.0 | 6.0 | 1.0 | 0.0 | 0.0 |
| E013 | chr3 | 50562372 | 50562588 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.282 | 0.3571 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| E014 | chr3 | 50565383 | 50565465 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.321 | 0.1262 | NA | NA | NA | 0.0 | 3.0 | 3.0 | 0.0 | 0.0 | 0.0 |
| E015 | chr3 | 50565465 | 50565525 | TRUE | OK | 4.4 | 0.0742 | 0.001459 | 0.09957 | -3.689 | -1.845 | 12.0 | 12.0 | 3.0 | 1.0 | 0.0 | 0.0 |
| E016 | chr3 | 50565525 | 50565700 | TRUE | OK | 4.8 | 0.0529 | 0.01458 | 0.3406 | -2.112 | -1.056 | 9.0 | 13.0 | 5.0 | 1.0 | 0.0 | 2.0 |
| E017 | chr3 | 50565700 | 50565861 | TRUE | OK | 5.6 | 0.0401 | 0.01598 | 0.3546 | -1.855 | -0.927 | 9.0 | 14.0 | 7.0 | 1.0 | 1.0 | 2.0 |
| E018 | chr3 | 50566005 | 50566094 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0606 | 0.6405 | NA | NA | NA | 3.0 | 4.0 | 2.0 | 1.0 | 1.0 | 1.0 |
| E019 | chr3 | 50567462 | 50567621 | TRUE | OK | 5.3 | 0.0343 | 0.0001068 | 0.01608 | -3.962 | -1.981 | 11.0 | 14.0 | 7.0 | 1.0 | 0.0 | 0.0 |
| E020 | chr3 | 50567621 | 50567625 | TRUE | OK | 3.3 | 0.0441 | 0.005508 | 0.2133 | -3.186 | -1.593 | 6.0 | 8.0 | 5.0 | 1.0 | 0.0 | 0.0 |
| E021 | chr3 | 50567625 | 50567642 | TRUE | OK | 3.3 | 0.0441 | 0.005508 | 0.2133 | -3.186 | -1.593 | 6.0 | 8.0 | 5.0 | 1.0 | 0.0 | 0.0 |
| E022 | chr3 | 50567642 | 50567665 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0471 | 0.0006123 | NA | NA | NA | 6.0 | 8.0 | 5.0 | 0.0 | 0.0 | 0.0 |
| E023 | chr3 | 50567665 | 50567676 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0589 | 0.001421 | NA | NA | NA | 5.0 | 8.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E024 | chr3 | 50567676 | 50567680 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0589 | 0.001421 | NA | NA | NA | 5.0 | 8.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E025 | chr3 | 50567680 | 50567747 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.9 | 0.0544 | 0.01186 | NA | NA | NA | 5.0 | 8.0 | 4.0 | 0.0 | 1.0 | 0.0 |
| E026 | chr3 | 50570902 | 50570991 | TRUE | OK | 92.1 | 0.00515 | 1.338e-18 | 4.633e-15 | 2.153 | 1.073 | 124.0 | 100.0 | 84.0 | 110.0 | 65.0 | 77.0 |
| E027 | chr3 | 50570991 | 50571027 | TRUE | OK | 98.1 | 0.00481 | 1.151e-20 | 4.913e-17 | 2.325 | 1.157 | 133.0 | 103.0 | 95.0 | 111.0 | 70.0 | 84.0 |
| J028 | chr3 | 50559737 | 50560916 | TRUE | OK | 10.9 | 0.0175 | 4.183e-05 | 0.007662 | -2.348 | -1.174 | 22.0 | 25.0 | 14.0 | 2.0 | 3.0 | 1.0 |
| J029 | chr3 | 50559737 | 50567462 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J030 | chr3 | 50561064 | 50561721 | TRUE | OK | 6.8 | 0.0179 | 2.86e-05 | 0.005693 | -3.328 | -1.664 | 19.0 | 14.0 | 8.0 | 2.0 | 0.0 | 0.0 |
| J031 | chr3 | 50561747 | 50562372 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J032 | chr3 | 50561747 | 50565465 | TRUE | OK | 3.8 | 0.0372 | 0.001762 | 0.1121 | -3.456 | -1.728 | 11.0 | 9.0 | 3.0 | 1.0 | 0.0 | 0.0 |
| J033 | chr3 | 50561747 | 50565525 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.54 | 1 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J034 | chr3 | 50561747 | 50566005 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J035 | chr3 | 50561747 | 50567462 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.113 | 0.1281 | NA | NA | NA | 3.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J036 | chr3 | 50561747 | 50570902 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J037 | chr3 | 50562588 | 50565465 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J038 | chr3 | 50565700 | 50567462 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J039 | chr3 | 50565861 | 50566005 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.129 | 0.1265 | NA | NA | NA | 1.0 | 3.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J040 | chr3 | 50565861 | 50567462 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.131 | 0.1902 | NA | NA | NA | 1.0 | 2.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr3 | 50565861 | 50570902 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J042 | chr3 | 50566094 | 50567462 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.129 | 0.1265 | NA | NA | NA | 1.0 | 3.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| N043 | chr3 | 50569574 | 50570930 | TRUE | OK | 26.1 | 0.0358 | 0.04074 | 0.5012 | 0.860 | 0.430 | 34.0 | 33.0 | 23.0 | 28.0 | 11.0 | 30.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000088543.15 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |