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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr11 | 67583594 | 67583741 | TRUE | OK | 73.5 | 0.017 | 0.5546 | 0.8674 | 0.147 | 0.073 | 100.0 | 80.0 | 52.0 | 85.0 | 78.0 | 53.0 |
E002 | chr11 | 67583741 | 67583811 | TRUE | OK | 160.8 | 0.0136 | 0.7662 | 0.9379 | 0.083 | 0.041 | 203.0 | 172.0 | 139.0 | 179.0 | 178.0 | 103.0 |
E003 | chr11 | 67583811 | 67583821 | TRUE | OK | 688.7 | 0.0109 | 0.1851 | 0.714 | 0.220 | 0.110 | 926.0 | 697.0 | 500.0 | 695.0 | 763.0 | 607.0 |
E004 | chr11 | 67583821 | 67583826 | TRUE | OK | 2461.0 | 0.00557 | 0.5632 | 0.8708 | -0.087 | -0.044 | 3464.0 | 2501.0 | 2359.0 | 2255.0 | 2327.0 | 2037.0 |
E005 | chr11 | 67583826 | 67583844 | TRUE | OK | 16613.9 | 0.00416 | 0.1213 | 0.6614 | -0.183 | -0.091 | 21690.0 | 17927.0 | 17182.0 | 14590.0 | 15348.0 | 13775.0 |
E006 | chr11 | 67584133 | 67584169 | TRUE | OK | 25357.3 | 0.00328 | 0.2726 | 0.7594 | -0.121 | -0.060 | 31994.0 | 27006.0 | 25929.0 | 22213.0 | 24605.0 | 21466.0 |
E007 | chr11 | 67584169 | 67584463 | TRUE | OK | 723.4 | 0.00374 | 0.01105 | 0.3012 | 0.276 | 0.138 | 767.0 | 684.0 | 692.0 | 647.0 | 802.0 | 756.0 |
E008 | chr11 | 67584463 | 67584570 | TRUE | OK | 34746.7 | 0.00402 | 0.2708 | 0.7585 | -0.136 | -0.068 | 43960.0 | 36724.0 | 35434.0 | 30389.0 | 34070.0 | 29376.0 |
E009 | chr11 | 67584570 | 67584684 | TRUE | OK | 506.3 | 0.00412 | 2.848e-06 | 0.0008707 | 0.548 | 0.274 | 463.0 | 469.0 | 423.0 | 565.0 | 588.0 | 531.0 |
E010 | chr11 | 67584684 | 67584772 | TRUE | OK | 40840.6 | 0.00337 | 0.05153 | 0.5376 | -0.207 | -0.103 | 51429.0 | 43440.0 | 42349.0 | 35075.0 | 40399.0 | 33955.0 |
E011 | chr11 | 67584772 | 67584794 | TRUE | OK | 749.4 | 0.00219 | 0.1885 | 0.7162 | 0.110 | 0.055 | 877.0 | 783.0 | 701.0 | 671.0 | 778.0 | 712.0 |
E012 | chr11 | 67584794 | 67585037 | TRUE | OK | 416.6 | 0.00575 | 0.2879 | 0.7659 | -0.162 | -0.081 | 595.0 | 452.0 | 396.0 | 364.0 | 370.0 | 355.0 |
E013 | chr11 | 67585037 | 67585064 | TRUE | OK | 227.2 | 0.00858 | 0.83 | 0.9562 | -0.056 | -0.028 | 340.0 | 231.0 | 195.0 | 209.0 | 218.0 | 192.0 |
E014 | chr11 | 67585064 | 67585137 | TRUE | OK | 597.9 | 0.00783 | 6.08e-11 | 6.682e-08 | 1.007 | 0.504 | 539.0 | 441.0 | 359.0 | 802.0 | 749.0 | 710.0 |
E015 | chr11 | 67585137 | 67585241 | TRUE | OK | 38335.3 | 0.00604 | 0.6681 | 0.9071 | -0.065 | -0.033 | 50095.0 | 39858.0 | 37026.0 | 34388.0 | 39246.0 | 31416.0 |
E016 | chr11 | 67586103 | 67586211 | TRUE | OK | 36455.3 | 0.0045 | 0.827 | 0.9554 | 0.028 | 0.014 | 46920.0 | 37417.0 | 34679.0 | 32514.0 | 39501.0 | 29464.0 |
E017 | chr11 | 67586211 | 67586273 | TRUE | OK | 157.2 | 0.00217 | 0.4158 | 0.8165 | 0.100 | 0.050 | 180.0 | 168.0 | 148.0 | 128.0 | 177.0 | 146.0 |
E018 | chr11 | 67586273 | 67586388 | TRUE | OK | 428.9 | 0.00182 | 8.13e-19 | 2.837e-15 | 0.819 | 0.409 | 366.0 | 326.0 | 337.0 | 480.0 | 624.0 | 433.0 |
E019 | chr11 | 67586388 | 67586439 | TRUE | OK | 29485.9 | 0.0037 | 0.5227 | 0.8561 | 0.080 | 0.040 | 37083.0 | 29813.0 | 28191.0 | 25501.0 | 33873.0 | 23634.0 |
E020 | chr11 | 67586439 | 67586505 | TRUE | OK | 24217.7 | 0.00524 | 0.1591 | 0.6956 | 0.192 | 0.096 | 29930.0 | 24081.0 | 22097.0 | 21130.0 | 29362.0 | 19635.0 |
E021 | chr11 | 67586505 | 67586569 | TRUE | OK | 18293.2 | 0.00367 | 0.3369 | 0.7861 | 0.115 | 0.057 | 22830.0 | 18456.0 | 17003.0 | 15777.0 | 21701.0 | 14717.0 |
E022 | chr11 | 67586569 | 67586604 | TRUE | OK | 9162.8 | 0.0081 | 0.131 | 0.6708 | 0.246 | 0.123 | 11408.0 | 9396.0 | 7291.0 | 8065.0 | 11654.0 | 7619.0 |
E023 | chr11 | 67586604 | 67586650 | TRUE | OK | 4148.2 | 0.0148 | 0.09287 | 0.6252 | 0.361 | 0.180 | 5233.0 | 4141.0 | 2863.0 | 3825.0 | 5670.0 | 3404.0 |
E024 | chr11 | 67586650 | 67586653 | TRUE | OK | 248.6 | 0.0194 | 0.7011 | 0.9175 | 0.112 | 0.056 | 369.0 | 249.0 | 180.0 | 213.0 | 328.0 | 175.0 |
E025 | chr11 | 67586653 | 67586656 | TRUE | OK | 43.1 | 0.033 | 0.629 | 0.8938 | -0.149 | -0.074 | 77.0 | 42.0 | 32.0 | 29.0 | 58.0 | 26.0 |
J026 | chr11 | 67583844 | 67584133 | TRUE | OK | 16423.7 | 0.00388 | 0.09727 | 0.6316 | -0.188 | -0.094 | 21473.0 | 17705.0 | 17049.0 | 14384.0 | 15167.0 | 13581.0 |
J027 | chr11 | 67584169 | 67584463 | TRUE | OK | 25202.0 | 0.00305 | 0.2532 | 0.7509 | -0.121 | -0.060 | 31775.0 | 26837.0 | 25801.0 | 22086.0 | 24461.0 | 21308.0 |
J028 | chr11 | 67584169 | 67584684 | TRUE | OK | 11.7 | 0.0676 | 0.5271 | 0.8577 | 0.331 | 0.165 | 18.0 | 10.0 | 7.0 | 16.0 | 6.0 | 15.0 |
J029 | chr11 | 67584570 | 67584684 | TRUE | OK | 30318.7 | 0.0023 | 0.0803 | 0.6031 | -0.155 | -0.077 | 37607.0 | 32384.0 | 31741.0 | 25804.0 | 29940.0 | 25508.0 |
J030 | chr11 | 67584772 | 67585037 | TRUE | OK | 31.8 | 0.00432 | 0.7569 | 0.935 | -0.077 | -0.038 | 44.0 | 34.0 | 29.0 | 24.0 | 31.0 | 31.0 |
J031 | chr11 | 67584772 | 67585137 | TRUE | OK | 25464.2 | 0.00305 | 0.2759 | 0.7609 | -0.110 | -0.055 | 33483.0 | 26685.0 | 25214.0 | 22453.0 | 25466.0 | 20814.0 |
J032 | chr11 | 67585241 | 67586103 | TRUE | OK | 23112.2 | 0.00421 | 0.3482 | 0.7905 | -0.109 | -0.054 | 30925.0 | 24304.0 | 22453.0 | 20691.0 | 23250.0 | 18385.0 |
J033 | chr11 | 67585241 | 67586388 | TRUE | OK | 36.9 | 0.00356 | 0.01431 | 0.3382 | 0.538 | 0.269 | 35.0 | 32.0 | 32.0 | 33.0 | 51.0 | 38.0 |
J034 | chr11 | 67586211 | 67586388 | TRUE | OK | 24409.4 | 0.00279 | 0.5289 | 0.8583 | 0.067 | 0.034 | 30851.0 | 24755.0 | 23217.0 | 21260.0 | 27807.0 | 19592.0 |
J035 | chr11 | 67586273 | 67586388 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0765 | 0.9961 | NA | NA | NA | 3.0 | 3.0 | 0.0 | 1.0 | 1.0 | 3.0 |
N036 | chr11 | 67583844 | 67584463 | TRUE | OK | 94.2 | 0.0261 | 0.08097 | 0.6042 | 0.479 | 0.239 | 89.0 | 116.0 | 56.0 | 116.0 | 101.0 | 91.0 |
N037 | chr11 | 67583844 | 67584684 | TRUE | OK | 25.5 | 0.016 | 0.3904 | 0.8061 | 0.259 | 0.129 | 31.0 | 27.0 | 19.0 | 23.0 | 22.0 | 33.0 |
N038 | chr11 | 67583848 | 67584133 | TRUE | OK | 29.1 | 0.00491 | 0.9585 | 0.9908 | 0.006 | 0.003 | 37.0 | 29.0 | 29.0 | 31.0 | 25.0 | 25.0 |
N039 | chr11 | 67584169 | 67584496 | TRUE | OK | 28.4 | 0.00498 | 0.3554 | 0.7934 | -0.239 | -0.119 | 35.0 | 36.0 | 29.0 | 26.0 | 22.0 | 24.0 |
N040 | chr11 | 67584772 | 67585096 | TRUE | OK | 15.1 | 0.0176 | 0.5849 | 0.8784 | -0.224 | -0.112 | 26.0 | 18.0 | 10.0 | 15.0 | 12.0 | 12.0 |
N041 | chr11 | 67585241 | 67586106 | TRUE | OK | 97.9 | 0.00339 | 0.6357 | 0.8963 | -0.075 | -0.038 | 141.0 | 100.0 | 89.0 | 87.0 | 105.0 | 73.0 |
N042 | chr11 | 67586271 | 67586388 | TRUE | OK | 12.8 | 0.00847 | 0.7787 | 0.9416 | -0.105 | -0.052 | 14.0 | 13.0 | 16.0 | 13.0 | 12.0 | 9.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000084207.16 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |