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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr3 | 12514933 | 12515016 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.18 | 0.0923 | NA | NA | NA | 0.0 | 2.1 | 3.0 | 1.0 | 0.0 | 0.0 |
E002 | chr3 | 12539506 | 12539597 | TRUE | OK | 15.8 | 0.033 | 0.001017 | 0.1331 | -1.405 | -0.703 | 19.7 | 19.8 | 24.2 | 6.0 | 7.8 | 17.4 |
E003 | chr3 | 12539971 | 12540325 | TRUE | OK | 135.8 | 0.00722 | 0.4095 | 0.827 | 0.169 | 0.084 | 105.5 | 143.9 | 105.8 | 173.7 | 126.3 | 159.5 |
E004 | chr3 | 12540325 | 12540433 | TRUE | OK | 90.3 | 0.00752 | 0.3889 | 0.8198 | -0.187 | -0.094 | 77.9 | 108.4 | 68.5 | 106.2 | 79.3 | 101.5 |
E005 | chr3 | 12541859 | 12542022 | TRUE | OK | 87.3 | 0.0097 | 0.3919 | 0.8211 | 0.191 | 0.095 | 72.0 | 91.8 | 60.4 | 91.3 | 91.1 | 117.0 |
E006 | chr3 | 12543179 | 12543229 | TRUE | OK | 48.2 | 0.0191 | 0.09447 | 0.6929 | 0.500 | 0.250 | 44.4 | 38.6 | 27.2 | 52.6 | 61.7 | 64.8 |
E007 | chr3 | 12545246 | 12545522 | TRUE | OK | 75.2 | 0.0137 | 0.106 | 0.7037 | 0.421 | 0.210 | 63.1 | 55.3 | 61.4 | 83.4 | 91.1 | 96.7 |
E008 | chr3 | 12545522 | 12545556 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.485 | 0.5267 | NA | NA | NA | 1.0 | 0.0 | 7.1 | 3.0 | 0.0 | 1.0 |
E009 | chr3 | 12553767 | 12554134 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E010 | chr3 | 12560756 | 12561020 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.158 | 0.3539 | NA | NA | NA | 1.0 | 3.1 | 0.0 | 1.0 | 0.0 | 1.0 |
E011 | chr3 | 12561020 | 12561059 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.251 | 0.7478 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 |
J012 | chr3 | 12515016 | 12539506 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J013 | chr3 | 12539597 | 12540325 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J014 | chr3 | 12540433 | 12541859 | TRUE | OK | 52.9 | 0.011 | 0.9217 | 0.9817 | 0.013 | 0.006 | 43.4 | 65.7 | 33.2 | 56.6 | 49.9 | 68.6 |
J015 | chr3 | 12542022 | 12543179 | TRUE | OK | 25.7 | 0.00987 | 0.01184 | 0.4138 | 0.777 | 0.388 | 20.7 | 14.6 | 16.1 | 31.8 | 28.4 | 42.5 |
J016 | chr3 | 12542022 | 12545246 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.095 | 0.7295 | NA | NA | NA | 2.0 | 0.0 | 4.0 | 3.0 | 1.0 | 1.9 |
J017 | chr3 | 12543229 | 12545246 | TRUE | OK | 35.4 | 0.0363 | 0.08886 | 0.6879 | 0.650 | 0.325 | 35.5 | 24.0 | 16.1 | 39.7 | 43.1 | 54.1 |
J018 | chr3 | 12543229 | 12560756 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J019 | chr3 | 12554134 | 12560756 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
N020 | chr3 | 12516661 | 12519058 | TRUE | OK | 76.2 | 0.0163 | 0.00199 | 0.1898 | -0.805 | -0.402 | 90.7 | 76.1 | 82.6 | 72.5 | 58.8 | 76.4 |
N021 | chr3 | 12519197 | 12528887 | TRUE | OK | 76.3 | 0.0496 | 0.002904 | 0.2309 | -1.210 | -0.604 | 78.9 | 77.2 | 115.8 | 64.5 | 65.6 | 56.1 |
N022 | chr3 | 12528924 | 12529761 | TRUE | OK | 67.3 | 0.0413 | 0.0002915 | 0.06378 | -1.377 | -0.688 | 72.0 | 75.1 | 103.7 | 55.6 | 55.8 | 41.6 |
N023 | chr3 | 12529873 | 12531569 | TRUE | OK | 97.0 | 0.0276 | 3.83e-06 | 0.002544 | -1.465 | -0.732 | 94.7 | 121.0 | 135.0 | 89.4 | 72.5 | 69.6 |
N024 | chr3 | 12531659 | 12532661 | TRUE | OK | 100.6 | 0.0143 | 6.932e-05 | 0.02405 | -0.998 | -0.498 | 96.6 | 114.7 | 121.9 | 95.3 | 91.1 | 84.1 |
N025 | chr3 | 12532773 | 12539160 | TRUE | OK | 22.5 | 0.0175 | 0.05148 | 0.6289 | -0.683 | -0.341 | 20.7 | 34.4 | 20.1 | 16.9 | 25.5 | 17.4 |
N026 | chr3 | 12542003 | 12543179 | TRUE | OK | 9.8 | 0.0162 | 0.1067 | 0.7043 | -0.712 | -0.356 | 11.8 | 13.6 | 8.1 | 7.9 | 11.8 | 5.8 |
N027 | chr3 | 12557176 | 12568874 | TRUE | OK | 184.4 | 0.28 | 0.6447 | 0.9027 | 0.025 | 0.012 | 187.3 | 122.0 | 186.3 | 210.5 | 210.5 | 189.5 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000225526.4 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |