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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr2 | 37196487 | 37196493 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0612 | 0.05733 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 3.0 | 2.9 | 2.9 |
E002 | chr2 | 37196493 | 37196495 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.1 | 0.0995 | 0.05834 | NA | NA | NA | 3.9 | 2.1 | 3.0 | 4.0 | 3.9 | 13.5 |
E003 | chr2 | 37196495 | 37196504 | TRUE | OK | 10.6 | 0.0236 | 0.01316 | 0.4283 | 1.132 | 0.566 | 5.9 | 6.3 | 11.1 | 12.9 | 9.8 | 17.4 |
E004 | chr2 | 37196504 | 37196507 | TRUE | OK | 89.4 | 0.0148 | 0.00961 | 0.387 | 0.633 | 0.316 | 80.9 | 69.9 | 91.7 | 99.3 | 102.8 | 91.8 |
E005 | chr2 | 37196507 | 37196520 | TRUE | OK | 176.4 | 0.00841 | 0.008906 | 0.3763 | 0.480 | 0.240 | 179.5 | 163.7 | 164.2 | 196.6 | 180.2 | 174.0 |
E006 | chr2 | 37196522 | 37196669 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.5 | 0.0259 | 0.4855 | NA | NA | NA | 6.9 | 7.3 | 11.1 | 6.0 | 11.8 | 7.7 |
E007 | chr2 | 37197253 | 37197350 | TRUE | OK | 19.6 | 0.0111 | 0.2293 | 0.7688 | 0.396 | 0.198 | 18.7 | 18.8 | 20.1 | 23.8 | 21.5 | 14.5 |
E008 | chr2 | 37198493 | 37198672 | TRUE | OK | 31.9 | 0.00628 | 0.2376 | 0.7713 | 0.297 | 0.148 | 32.5 | 37.5 | 27.2 | 26.8 | 32.3 | 34.8 |
E009 | chr2 | 37199703 | 37199819 | TRUE | OK | 460.8 | 0.0107 | 0.043 | 0.6035 | 0.386 | 0.193 | 471.3 | 440.0 | 470.4 | 466.6 | 447.5 | 468.9 |
E010 | chr2 | 37201047 | 37201092 | TRUE | OK | 558.2 | 0.00868 | 0.0299 | 0.552 | 0.375 | 0.187 | 565.0 | 555.8 | 564.0 | 579.8 | 538.6 | 546.3 |
E011 | chr2 | 37201092 | 37201641 | TRUE | OK | 68.6 | 0.0147 | 0.2536 | 0.7768 | -0.306 | -0.153 | 68.0 | 118.9 | 64.5 | 41.7 | 64.6 | 54.1 |
E012 | chr2 | 37201641 | 37201704 | TRUE | OK | 712.9 | 0.00224 | 0.08794 | 0.6867 | 0.168 | 0.084 | 706.0 | 849.8 | 733.3 | 677.1 | 635.6 | 675.8 |
E013 | chr2 | 37201704 | 37201726 | TRUE | OK | 677.7 | 0.0016 | 0.3009 | 0.7917 | 0.094 | 0.047 | 692.2 | 839.4 | 686.9 | 642.3 | 580.7 | 624.6 |
E014 | chr2 | 37201862 | 37202692 | TRUE | OK | 1381.8 | 0.00365 | 0.4469 | 0.8386 | -0.096 | -0.048 | 1408.0 | 2004.1 | 1313.4 | 1223.1 | 1116.4 | 1225.9 |
E015 | chr2 | 37202692 | 37203249 | TRUE | OK | 975.1 | 0.00517 | 0.2499 | 0.7755 | -0.166 | -0.083 | 933.8 | 1489.0 | 975.0 | 881.6 | 763.8 | 807.3 |
E016 | chr2 | 37203249 | 37203495 | TRUE | OK | 421.2 | 0.00218 | 0.2567 | 0.7778 | 0.120 | 0.060 | 434.8 | 516.1 | 415.0 | 419.9 | 355.5 | 385.8 |
E017 | chr2 | 37203495 | 37204303 | TRUE | OK | 837.2 | 0.00112 | 0.1377 | 0.7283 | 0.110 | 0.055 | 842.1 | 1070.9 | 819.9 | 756.5 | 741.3 | 792.8 |
E018 | chr2 | 37204303 | 37204739 | TRUE | OK | 620.8 | 0.00336 | 0.1392 | 0.7292 | 0.152 | 0.076 | 552.2 | 848.8 | 599.3 | 549.0 | 585.6 | 589.8 |
E019 | chr2 | 37204739 | 37204743 | TRUE | OK | 13.8 | 0.0276 | 0.3796 | 0.8167 | 0.398 | 0.199 | 11.8 | 15.6 | 13.1 | 7.9 | 12.7 | 21.3 |
E020 | chr2 | 37213436 | 37213466 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.1 | 0.108 | 0.1077 | NA | NA | NA | 2.0 | 5.2 | 14.1 | 11.9 | 12.7 | 8.7 |
E021 | chr2 | 37213466 | 37213554 | TRUE | OK | 10.6 | 0.0627 | 0.3734 | 0.8144 | 0.475 | 0.237 | 3.9 | 11.5 | 15.1 | 9.9 | 15.7 | 7.7 |
E022 | chr2 | 37213554 | 37213725 | TRUE | OK | 13.7 | 0.0248 | 0.7187 | 0.9257 | -0.131 | -0.065 | 13.8 | 17.7 | 16.1 | 9.9 | 17.6 | 6.8 |
E023 | chr2 | 37215320 | 37215518 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.0566 | 0.5027 | NA | NA | NA | 5.9 | 12.5 | 7.1 | 4.0 | 14.7 | 7.7 |
E024 | chr2 | 37216112 | 37216193 | TRUE | OK | 595.7 | 0.00674 | 0.001963 | 0.1886 | -0.439 | -0.219 | 762.2 | 798.7 | 662.8 | 494.4 | 397.6 | 458.3 |
J025 | chr2 | 37196520 | 37198493 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.6 | 0.0296 | 0.4187 | NA | NA | NA | 4.9 | 3.1 | 2.0 | 6.0 | 2.9 | 2.9 |
J026 | chr2 | 37196520 | 37199703 | TRUE | OK | 167.7 | 0.00863 | 0.01408 | 0.4385 | 0.458 | 0.229 | 172.6 | 154.3 | 159.1 | 180.7 | 172.4 | 167.3 |
J027 | chr2 | 37196669 | 37197253 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0666 | 0.1874 | NA | NA | NA | 3.0 | 2.1 | 2.0 | 0.0 | 2.0 | 0.0 |
J028 | chr2 | 37197350 | 37198493 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0669 | 0.01428 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 4.0 | 4.9 | 1.0 |
J029 | chr2 | 37198672 | 37199703 | TRUE | OK | 17.4 | 0.0179 | 0.6874 | 0.9159 | 0.159 | 0.079 | 22.7 | 17.7 | 15.1 | 10.9 | 17.6 | 20.3 |
J030 | chr2 | 37199819 | 37201047 | TRUE | OK | 434.9 | 0.0106 | 0.03609 | 0.5792 | 0.398 | 0.199 | 436.8 | 412.9 | 448.2 | 446.8 | 419.1 | 445.7 |
J031 | chr2 | 37201092 | 37201641 | TRUE | OK | 460.0 | 0.0075 | 0.02991 | 0.552 | 0.355 | 0.177 | 465.4 | 461.9 | 465.3 | 471.6 | 439.7 | 456.3 |
J032 | chr2 | 37201726 | 37201862 | TRUE | OK | 310.0 | 0.00847 | 0.1542 | 0.7363 | 0.257 | 0.128 | 341.2 | 318.0 | 304.2 | 318.7 | 271.3 | 306.5 |
J033 | chr2 | 37201726 | 37203249 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0501 | 0.2503 | NA | NA | NA | 0.0 | 2.1 | 2.0 | 2.0 | 2.0 | 2.9 |
J034 | chr2 | 37201726 | 37204303 | TRUE | OK | 135.2 | 0.00159 | 0.9469 | 0.9874 | 0.009 | 0.004 | 128.2 | 188.7 | 136.0 | 125.1 | 111.6 | 121.8 |
J035 | chr2 | 37201726 | 37213436 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.154 | 0.2376 | NA | NA | NA | 0.0 | 2.1 | 7.1 | 5.0 | 3.9 | 4.8 |
J036 | chr2 | 37213554 | 37215320 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.104 | 0.5737 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 0.0 | 2.0 | 1.9 |
J037 | chr2 | 37215518 | 37216112 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.196 | 0.1578 | NA | NA | NA | 1.0 | 2.1 | 0.0 | 0.0 | 0.0 | 0.0 |
N038 | chr2 | 37201903 | 37202783 | TRUE | OK | 526.6 | 0.00727 | 9.411e-05 | 0.02986 | -0.628 | -0.314 | 563.0 | 939.5 | 552.0 | 403.1 | 337.9 | 364.5 |
N039 | chr2 | 37202865 | 37202949 | TRUE | OK | 659.5 | 0.00787 | 7.072e-06 | 0.004151 | -0.725 | -0.362 | 702.0 | 1164.7 | 745.3 | 513.3 | 396.6 | 435.1 |
N040 | chr2 | 37213961 | 37214885 | TRUE | OK | 488.6 | 0.00404 | 0.0004549 | 0.08369 | -0.418 | -0.209 | 617.2 | 694.5 | 508.6 | 394.1 | 336.9 | 380.0 |
N041 | chr2 | 37214952 | 37216139 | TRUE | OK | 476.8 | 0.00488 | 0.001827 | 0.1817 | -0.394 | -0.197 | 598.5 | 649.6 | 518.7 | 406.1 | 329.0 | 358.7 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000218739.10 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |