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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr1 | 164555583 | 164555719 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E002 | chr1 | 164559199 | 164559406 | TRUE | OK | 25.0 | 0.008 | 0.6034 | 0.889 | 0.143 | 0.071 | 18.7 | 10.4 | 22.2 | 27.8 | 38.2 | 32.9 |
| E003 | chr1 | 164559406 | 164559529 | TRUE | OK | 20.1 | 0.00824 | 0.3309 | 0.8012 | 0.303 | 0.152 | 16.8 | 8.3 | 13.1 | 26.8 | 26.4 | 29.0 |
| E004 | chr1 | 164559634 | 164559721 | TRUE | OK | 16.3 | 0.0108 | 0.3317 | 0.8013 | -0.349 | -0.174 | 16.8 | 7.3 | 17.1 | 19.9 | 15.7 | 21.3 |
| E005 | chr1 | 164559721 | 164559743 | TRUE | OK | 22.9 | 0.00845 | 0.7562 | 0.9372 | -0.104 | -0.052 | 22.7 | 10.4 | 19.1 | 32.8 | 25.5 | 27.1 |
| E006 | chr1 | 164559743 | 164559822 | TRUE | OK | 26.4 | 0.00961 | 0.6506 | 0.9046 | -0.148 | -0.074 | 26.6 | 10.4 | 24.2 | 37.7 | 33.3 | 26.1 |
| E007 | chr1 | 164559822 | 164560012 | TRUE | OK | 90.9 | 0.00444 | 0.00084 | 0.12 | 0.578 | 0.289 | 66.1 | 27.1 | 60.4 | 129.1 | 125.3 | 137.3 |
| E008 | chr1 | 164560012 | 164560013 | TRUE | OK | 71.3 | 0.00463 | 1.427e-05 | 0.007312 | 0.843 | 0.421 | 45.4 | 19.8 | 40.3 | 106.2 | 99.9 | 116.0 |
| E009 | chr1 | 164560013 | 164560145 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0461 | 0.839 | NA | NA | NA | 3.9 | 2.1 | 2.0 | 3.0 | 2.9 | 6.8 |
| E010 | chr1 | 164560145 | 164560357 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.0397 | 0.8453 | NA | NA | NA | 3.0 | 3.1 | 2.0 | 4.0 | 3.9 | 7.7 |
| E011 | chr1 | 164560357 | 164560450 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.146 | 0.3704 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 1.0 | 2.9 |
| E012 | chr1 | 164562804 | 164562930 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E013 | chr1 | 164563237 | 164563311 | TRUE | OK | 95.4 | 0.00314 | 0.004671 | 0.2865 | 0.456 | 0.228 | 68.0 | 37.5 | 65.5 | 135.0 | 127.3 | 139.2 |
| E014 | chr1 | 164563927 | 164564015 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.254 | 0.9788 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 0.0 |
| E015 | chr1 | 164576783 | 164577004 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E016 | chr1 | 164590349 | 164590434 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E017 | chr1 | 164605192 | 164605419 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E018 | chr1 | 164625928 | 164626005 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.6 | 0.0799 | 0.2864 | NA | NA | NA | 2.0 | 2.1 | 4.0 | 3.0 | 8.8 | 13.5 |
| E019 | chr1 | 164626005 | 164626035 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.6 | 0.0725 | 0.1089 | NA | NA | NA | 2.0 | 2.1 | 1.0 | 3.0 | 7.8 | 11.6 |
| E020 | chr1 | 164626035 | 164626096 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.2 | 0.0436 | 0.2812 | NA | NA | NA | 3.9 | 2.1 | 2.0 | 4.0 | 7.8 | 11.6 |
| E021 | chr1 | 164630980 | 164631116 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.85 | 0.9197 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E022 | chr1 | 164641028 | 164642193 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0878 | 0.5647 | NA | NA | NA | 0.0 | 0.0 | 3.0 | 2.0 | 2.9 | 2.9 |
| E023 | chr1 | 164642692 | 164642829 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E024 | chr1 | 164651895 | 164652139 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.858 | 0.9186 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E025 | chr1 | 164657112 | 164657372 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E026 | chr1 | 164674489 | 164674816 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E027 | chr1 | 164682129 | 164682309 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.224 | 0.6934 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 1.0 |
| E028 | chr1 | 164682309 | 164682483 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.157 | 0.1029 | NA | NA | NA | 0.0 | 2.1 | 3.0 | 0.0 | 1.0 | 1.0 |
| E029 | chr1 | 164682483 | 164684965 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.6 | 0.0726 | 0.703 | NA | NA | NA | 1.0 | 2.1 | 6.0 | 2.0 | 4.9 | 5.8 |
| E030 | chr1 | 164772911 | 164773022 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.865 | 0.9188 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E031 | chr1 | 164787642 | 164787753 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.922 | 0.5759 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 0.0 |
| E032 | chr1 | 164792491 | 164792493 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.1 | 0.3265 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 4.0 | 5.9 | 1.0 |
| E033 | chr1 | 164792493 | 164792738 | TRUE | OK | 167.4 | 0.00988 | 0.01651 | 0.4637 | 0.434 | 0.217 | 132.1 | 55.3 | 118.9 | 218.4 | 225.2 | 254.3 |
| E034 | chr1 | 164799698 | 164799796 | TRUE | OK | 94.1 | 0.0106 | 0.4509 | 0.8397 | 0.151 | 0.076 | 81.8 | 39.6 | 71.5 | 99.3 | 128.3 | 144.1 |
| E035 | chr1 | 164799796 | 164799883 | TRUE | OK | 92.3 | 0.00986 | 0.7275 | 0.9287 | 0.057 | 0.029 | 79.9 | 38.6 | 78.6 | 96.3 | 124.4 | 136.3 |
| E036 | chr1 | 164799883 | 164799889 | TRUE | OK | 58.1 | 0.0154 | 0.8161 | 0.9542 | -0.086 | -0.043 | 55.2 | 22.9 | 53.4 | 54.6 | 78.3 | 84.1 |
| E037 | chr1 | 164807541 | 164807571 | TRUE | OK | 83.7 | 0.00443 | 0.9477 | 0.9876 | -0.029 | -0.014 | 77.9 | 34.4 | 72.5 | 98.3 | 109.7 | 109.3 |
| E038 | chr1 | 164807571 | 164807677 | TRUE | OK | 99.0 | 0.00328 | 0.3967 | 0.8228 | 0.126 | 0.063 | 81.8 | 42.8 | 80.6 | 123.1 | 139.1 | 126.7 |
| E039 | chr1 | 164811989 | 164812149 | TRUE | OK | 118.3 | 0.0033 | 0.4114 | 0.8275 | 0.115 | 0.058 | 95.6 | 52.1 | 98.7 | 144.0 | 167.5 | 151.8 |
| E040 | chr1 | 164812727 | 164820071 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0363 | 0.6569 | NA | NA | NA | 4.9 | 3.1 | 3.0 | 10.9 | 8.8 | 3.9 |
| E041 | chr1 | 164820071 | 164820184 | TRUE | OK | 21.1 | 0.0317 | 0.9745 | 0.9938 | -0.008 | -0.004 | 20.7 | 6.3 | 19.1 | 20.8 | 38.2 | 21.3 |
| E042 | chr1 | 164821536 | 164821626 | TRUE | OK | 84.6 | 0.00561 | 0.405 | 0.8255 | 0.144 | 0.072 | 79.9 | 39.6 | 54.4 | 105.2 | 114.6 | 114.1 |
| E043 | chr1 | 164831470 | 164831483 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E044 | chr1 | 164846583 | 164846955 | TRUE | OK | 138.4 | 0.00245 | 0.8123 | 0.9532 | -0.039 | -0.019 | 120.3 | 70.9 | 115.8 | 179.7 | 176.3 | 167.3 |
| E045 | chr1 | 164846955 | 164847071 | TRUE | OK | 69.9 | 0.00859 | 0.8498 | 0.9632 | 0.012 | 0.006 | 57.2 | 26.1 | 68.5 | 92.3 | 95.0 | 80.2 |
| E046 | chr1 | 164847071 | 164847101 | TRUE | OK | 58.3 | 0.0258 | 0.1704 | 0.7443 | 0.363 | 0.181 | 42.4 | 13.6 | 52.4 | 90.3 | 81.3 | 69.6 |
| E047 | chr1 | 164847101 | 164848522 | TRUE | OK | 299.6 | 0.0067 | 0.4868 | 0.8517 | 0.089 | 0.045 | 251.4 | 135.6 | 247.8 | 423.9 | 380.0 | 358.7 |
| E048 | chr1 | 164848522 | 164849339 | TRUE | OK | 208.3 | 0.00192 | 0.7964 | 0.9489 | -0.034 | -0.017 | 178.5 | 111.6 | 171.2 | 269.0 | 262.4 | 257.2 |
| E049 | chr1 | 164849339 | 164849829 | TRUE | OK | 177.8 | 0.00223 | 0.4661 | 0.8447 | -0.100 | -0.050 | 158.7 | 89.7 | 155.1 | 215.4 | 222.3 | 225.3 |
| E050 | chr1 | 164849829 | 164850357 | TRUE | OK | 125.4 | 0.00341 | 0.06141 | 0.65 | -0.285 | -0.142 | 124.2 | 73.0 | 108.8 | 149.9 | 137.1 | 159.5 |
| E051 | chr1 | 164850357 | 164851821 | TRUE | OK | 274.7 | 0.0255 | 0.5461 | 0.8706 | -0.123 | -0.061 | 198.2 | 217.9 | 211.5 | 298.8 | 343.7 | 378.0 |
| E052 | chr1 | 164851821 | 164851831 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.389 | 0.6835 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E053 | chr1 | 164899187 | 164899296 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J054 | chr1 | 164555719 | 164563237 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J055 | chr1 | 164559529 | 164559721 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.3 | 0.0437 | 0.6375 | NA | NA | NA | 4.9 | 2.1 | 1.0 | 8.9 | 3.9 | 4.8 |
| J056 | chr1 | 164560013 | 164560145 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.839 | 0.5536 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.9 |
| J057 | chr1 | 164560013 | 164563237 | TRUE | OK | 68.5 | 0.00282 | 5.051e-06 | 0.003174 | 0.839 | 0.419 | 42.4 | 19.8 | 39.3 | 103.3 | 97.9 | 108.3 |
| J058 | chr1 | 164562930 | 164563237 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J059 | chr1 | 164563311 | 164563927 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.265 | 0.6965 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 |
| J060 | chr1 | 164563311 | 164682129 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J061 | chr1 | 164563311 | 164792493 | TRUE | OK | 78.1 | 0.0032 | 0.005952 | 0.3185 | 0.470 | 0.235 | 61.1 | 25.0 | 52.4 | 114.2 | 106.7 | 109.3 |
| J062 | chr1 | 164577004 | 164792493 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J063 | chr1 | 164590434 | 164792493 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J064 | chr1 | 164605419 | 164625928 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J065 | chr1 | 164626096 | 164641028 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.264 | 0.6987 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
| J066 | chr1 | 164626096 | 164657112 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J067 | chr1 | 164626096 | 164792493 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.172 | 0.8561 | NA | NA | NA | 3.0 | 2.1 | 1.0 | 1.0 | 2.9 | 9.7 |
| J068 | chr1 | 164631116 | 164792493 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J069 | chr1 | 164642193 | 164642692 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J070 | chr1 | 164642829 | 164674489 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J071 | chr1 | 164652139 | 164831470 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J072 | chr1 | 164657372 | 164792493 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J073 | chr1 | 164674816 | 164682309 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J074 | chr1 | 164773022 | 164792493 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.8997 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J075 | chr1 | 164787753 | 164792493 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J076 | chr1 | 164792738 | 164799698 | TRUE | OK | 75.1 | 0.0117 | 0.2701 | 0.7823 | 0.245 | 0.123 | 63.1 | 29.2 | 55.4 | 79.4 | 103.8 | 119.9 |
| J077 | chr1 | 164799889 | 164807541 | TRUE | OK | 56.8 | 0.0138 | 0.7655 | 0.9399 | -0.104 | -0.052 | 54.2 | 21.9 | 53.4 | 54.6 | 76.4 | 80.2 |
| J078 | chr1 | 164807677 | 164811989 | TRUE | OK | 72.0 | 0.00316 | 0.3018 | 0.7919 | 0.175 | 0.087 | 55.2 | 30.2 | 60.4 | 88.4 | 106.7 | 90.9 |
| J079 | chr1 | 164807677 | 164821536 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.556 | 0.8993 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| J080 | chr1 | 164812149 | 164820071 | TRUE | OK | 14.3 | 0.0496 | 0.8321 | 0.9584 | 0.084 | 0.042 | 12.8 | 3.1 | 14.1 | 10.9 | 27.4 | 17.4 |
| J081 | chr1 | 164812149 | 164821536 | TRUE | OK | 45.5 | 0.00412 | 0.5883 | 0.8841 | 0.112 | 0.056 | 41.4 | 24.0 | 29.2 | 61.6 | 53.9 | 62.8 |
| J082 | chr1 | 164820184 | 164821536 | TRUE | OK | 11.2 | 0.0143 | 0.578 | 0.8808 | -0.244 | -0.122 | 13.8 | 4.2 | 9.1 | 9.9 | 17.6 | 12.6 |
| J083 | chr1 | 164821626 | 164846583 | TRUE | OK | 53.6 | 0.00541 | 0.169 | 0.7438 | 0.281 | 0.140 | 50.3 | 21.9 | 31.2 | 69.5 | 72.5 | 76.4 |
| J084 | chr1 | 164821626 | 164849339 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J085 | chr1 | 164831483 | 164899187 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000185630.18 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |