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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr6 | 3231402 | 3231806 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E002 | chr6 | 3231806 | 3231828 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E003 | chr6 | 3231828 | 3231911 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E004 | chr6 | 3231911 | 3232162 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E005 | chr6 | 3237334 | 3237865 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.623 | 0.3606 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 0.0 | 0.0 | 0.0 |
E006 | chr6 | 3244092 | 3244253 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.822 | 0.5852 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E007 | chr6 | 3255050 | 3255229 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E008 | chr6 | 3258893 | 3258896 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.854 | 0.5794 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E009 | chr6 | 3258896 | 3258951 | TRUE | OK | 21.0 | 0.00989 | 0.1218 | 0.7174 | -0.465 | -0.232 | 22.7 | 27.1 | 23.2 | 15.9 | 12.7 | 24.2 |
E010 | chr6 | 3258951 | 3258960 | TRUE | OK | 35.4 | 0.017 | 0.01739 | 0.4712 | -0.697 | -0.348 | 38.5 | 52.1 | 40.3 | 35.7 | 16.6 | 29.0 |
E011 | chr6 | 3258960 | 3258976 | TRUE | OK | 93.5 | 0.0297 | 0.01633 | 0.4617 | -0.757 | -0.378 | 108.5 | 156.4 | 83.6 | 85.4 | 45.0 | 82.2 |
E012 | chr6 | 3258976 | 3258983 | TRUE | OK | 110.9 | 0.0175 | 0.00296 | 0.2328 | -0.760 | -0.380 | 123.3 | 186.6 | 102.7 | 96.3 | 62.7 | 93.8 |
E013 | chr6 | 3258983 | 3259059 | TRUE | OK | 316.5 | 0.00782 | 0.004408 | 0.2793 | -0.493 | -0.247 | 297.8 | 481.7 | 297.1 | 272.0 | 246.8 | 303.6 |
E014 | chr6 | 3259059 | 3259196 | TRUE | OK | 538.9 | 0.00778 | 0.00647 | 0.3292 | -0.461 | -0.230 | 500.9 | 781.0 | 496.6 | 475.5 | 458.3 | 521.1 |
E015 | chr6 | 3263683 | 3263759 | TRUE | OK | 507.7 | 0.00714 | 0.1284 | 0.7223 | -0.259 | -0.129 | 453.6 | 712.2 | 447.2 | 453.7 | 462.2 | 517.3 |
E016 | chr6 | 3263759 | 3264173 | TRUE | OK | 39.5 | 0.0301 | 0.0995 | 0.6976 | -0.570 | -0.285 | 47.3 | 34.4 | 59.4 | 30.8 | 34.3 | 30.9 |
E017 | chr6 | 3264173 | 3264208 | TRUE | OK | 21.9 | 0.0322 | 0.02795 | 0.5422 | -0.860 | -0.430 | 36.5 | 21.9 | 26.2 | 14.9 | 12.7 | 19.3 |
E018 | chr6 | 3264208 | 3264325 | TRUE | OK | 232.5 | 0.00303 | 0.1633 | 0.7408 | -0.182 | -0.091 | 192.3 | 310.7 | 232.7 | 217.4 | 221.3 | 220.4 |
E019 | chr6 | 3264325 | 3267590 | TRUE | OK | 242.7 | 0.0196 | 0.08369 | 0.6817 | -0.387 | -0.194 | 247.5 | 273.2 | 289.1 | 153.9 | 245.8 | 246.5 |
E020 | chr6 | 3267590 | 3267779 | TRUE | OK | 428.7 | 0.0038 | 0.08236 | 0.6803 | -0.230 | -0.115 | 372.7 | 589.1 | 397.9 | 387.2 | 411.3 | 413.8 |
E021 | chr6 | 3267779 | 3267781 | TRUE | OK | 87.0 | 0.00903 | 0.02152 | 0.5033 | -0.474 | -0.237 | 80.9 | 122.0 | 98.7 | 88.4 | 66.6 | 65.7 |
E022 | chr6 | 3267781 | 3267920 | TRUE | OK | 100.2 | 0.00888 | 0.007841 | 0.3573 | -0.532 | -0.266 | 94.7 | 141.8 | 115.8 | 98.3 | 78.3 | 72.5 |
E023 | chr6 | 3267920 | 3268049 | TRUE | OK | 45.3 | 0.00483 | 0.004832 | 0.2912 | -0.599 | -0.299 | 49.3 | 64.6 | 49.4 | 39.7 | 31.3 | 37.7 |
E024 | chr6 | 3268049 | 3268050 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.1 | 0.157 | 0.6666 | NA | NA | NA | 7.9 | 1.0 | 2.0 | 3.0 | 6.9 | 3.9 |
E025 | chr6 | 3269515 | 3270835 | TRUE | OK | 281.9 | 0.00244 | 9.93e-20 | 1.31e-15 | 1.052 | 0.526 | 188.3 | 231.5 | 186.3 | 361.4 | 350.6 | 373.2 |
E026 | chr6 | 3282235 | 3282330 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.111 | 0.838 | NA | NA | NA | 3.0 | 5.2 | 0.0 | 1.0 | 3.9 | 1.9 |
E027 | chr6 | 3289798 | 3291984 | TRUE | OK | 58.2 | 0.0191 | 9.912e-07 | 0.0008228 | 1.421 | 0.710 | 41.4 | 25.0 | 31.2 | 79.4 | 81.3 | 90.9 |
E028 | chr6 | 3302857 | 3303373 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0575 | 0.06045 | NA | NA | NA | 1.0 | 2.1 | 1.0 | 2.0 | 3.9 | 6.8 |
J029 | chr6 | 3231911 | 3237334 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J030 | chr6 | 3232162 | 3244092 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J031 | chr6 | 3232162 | 3255050 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J032 | chr6 | 3244253 | 3269515 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.538 | 0.5496 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J033 | chr6 | 3255229 | 3267590 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J034 | chr6 | 3259196 | 3263683 | TRUE | OK | 398.4 | 0.00555 | 0.1511 | 0.7353 | -0.220 | -0.110 | 365.8 | 551.6 | 345.5 | 362.4 | 355.5 | 409.9 |
J035 | chr6 | 3259196 | 3267590 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.296 | 0.1629 | NA | NA | NA | 0.0 | 5.2 | 1.0 | 0.0 | 0.0 | 1.0 |
J036 | chr6 | 3259196 | 3282235 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J037 | chr6 | 3259196 | 3289798 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J038 | chr6 | 3263759 | 3264173 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.5 | 0.03 | 0.2978 | NA | NA | NA | 7.9 | 11.5 | 4.0 | 4.0 | 2.9 | 8.7 |
J039 | chr6 | 3263759 | 3264208 | TRUE | OK | 124.7 | 0.00669 | 0.7052 | 0.9214 | -0.090 | -0.045 | 92.7 | 181.4 | 111.8 | 117.1 | 116.5 | 128.6 |
J040 | chr6 | 3263759 | 3267590 | TRUE | OK | 182.0 | 0.00816 | 0.5718 | 0.8788 | -0.112 | -0.056 | 171.6 | 252.3 | 142.0 | 150.9 | 175.3 | 200.1 |
J041 | chr6 | 3264325 | 3267590 | TRUE | OK | 127.6 | 0.00541 | 0.9087 | 0.9783 | -0.030 | -0.015 | 93.7 | 167.9 | 125.9 | 122.1 | 137.1 | 118.9 |
J042 | chr6 | 3282330 | 3302857 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
N043 | chr6 | 3273412 | 3283851 | TRUE | OK | 19.1 | 0.00748 | 2.63e-05 | 0.01158 | 1.367 | 0.684 | 12.8 | 9.4 | 10.1 | 21.8 | 27.4 | 32.9 |
N044 | chr6 | 3283975 | 3285078 | TRUE | OK | 25.6 | 0.0568 | 0.02653 | 0.5342 | 1.064 | 0.532 | 21.7 | 8.3 | 20.1 | 27.8 | 30.4 | 45.4 |
N045 | chr6 | 3285111 | 3286858 | TRUE | OK | 29.3 | 0.0645 | 0.03639 | 0.5804 | 0.997 | 0.499 | 28.6 | 9.4 | 21.2 | 37.7 | 34.3 | 44.5 |
N046 | chr6 | 3287091 | 3289763 | TRUE | OK | 40.5 | 0.0244 | 0.0001438 | 0.03972 | 1.268 | 0.634 | 28.6 | 15.6 | 28.2 | 51.6 | 59.7 | 59.0 |
N047 | chr6 | 3289866 | 3298090 | TRUE | OK | 31.4 | 0.0191 | 3.294e-05 | 0.01367 | 1.369 | 0.684 | 20.7 | 11.5 | 21.2 | 43.7 | 40.2 | 51.2 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000180822.11 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |