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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr18 | 12307668 | 12307769 | TRUE | OK | 18.5 | 0.0182 | 0.2194 | 0.7646 | 0.444 | 0.222 | 16.8 | 22.9 | 15.1 | 23.8 | 21.5 | 10.6 |
E002 | chr18 | 12308058 | 12308231 | TRUE | OK | 56.0 | 0.00559 | 0.9602 | 0.9907 | -0.003 | -0.002 | 71.0 | 62.6 | 58.4 | 51.6 | 46.0 | 46.4 |
E003 | chr18 | 12308231 | 12308233 | TRUE | OK | 52.3 | 0.00492 | 0.9986 | 0.9996 | 0.007 | 0.004 | 61.1 | 58.4 | 59.4 | 44.7 | 43.1 | 47.4 |
E004 | chr18 | 12308233 | 12308240 | TRUE | OK | 66.4 | 0.00755 | 0.7889 | 0.9467 | 0.063 | 0.032 | 76.9 | 67.8 | 78.6 | 59.6 | 60.7 | 55.1 |
E005 | chr18 | 12308240 | 12308243 | TRUE | OK | 68.6 | 0.00758 | 0.7786 | 0.944 | 0.066 | 0.033 | 79.9 | 69.9 | 80.6 | 63.5 | 61.7 | 56.1 |
E006 | chr18 | 12308243 | 12308246 | TRUE | OK | 74.6 | 0.0104 | 0.7092 | 0.9227 | 0.091 | 0.045 | 83.8 | 73.0 | 91.7 | 73.5 | 65.6 | 59.9 |
E007 | chr18 | 12308246 | 12308252 | TRUE | OK | 155.5 | 0.00393 | 0.2815 | 0.7853 | 0.160 | 0.080 | 156.8 | 175.2 | 175.3 | 159.8 | 137.1 | 128.6 |
E008 | chr18 | 12308252 | 12308261 | TRUE | OK | 1209.2 | 0.00895 | 0.122 | 0.7177 | 0.259 | 0.130 | 1319.3 | 1193.9 | 1317.4 | 1187.4 | 1040.0 | 1196.9 |
E009 | chr18 | 12308261 | 12308262 | TRUE | OK | 1214.4 | 0.00862 | 0.1194 | 0.7155 | 0.257 | 0.129 | 1325.2 | 1206.4 | 1318.5 | 1193.3 | 1042.0 | 1200.8 |
E010 | chr18 | 12308262 | 12308349 | TRUE | OK | 5161.6 | 0.0111 | 0.2345 | 0.7706 | 0.222 | 0.111 | 5834.2 | 5171.9 | 5670.7 | 5023.5 | 4414.6 | 4854.5 |
E011 | chr18 | 12308349 | 12308686 | TRUE | OK | 220.7 | 0.039 | 0.9281 | 0.9831 | 0.041 | 0.021 | 229.7 | 244.0 | 273.0 | 209.5 | 255.6 | 112.2 |
E012 | chr18 | 12308686 | 12308795 | TRUE | OK | 7231.9 | 0.0112 | 0.1855 | 0.7511 | 0.249 | 0.124 | 8065.6 | 7302.2 | 7934.9 | 7032.9 | 6289.9 | 6765.9 |
E013 | chr18 | 12310942 | 12310966 | TRUE | OK | 5876.3 | 0.0124 | 0.1717 | 0.7448 | 0.267 | 0.133 | 6632.9 | 5773.5 | 6377.7 | 5743.3 | 5067.8 | 5662.8 |
E014 | chr18 | 12310966 | 12311053 | TRUE | OK | 6730.8 | 0.0127 | 0.2019 | 0.7585 | 0.255 | 0.127 | 7684.0 | 6693.2 | 7251.0 | 6550.4 | 5702.3 | 6503.9 |
E015 | chr18 | 12311053 | 12311135 | TRUE | OK | 121.6 | 0.0152 | 0.07498 | 0.6704 | 0.418 | 0.209 | 125.2 | 100.1 | 139.0 | 130.1 | 121.4 | 114.1 |
E016 | chr18 | 12320535 | 12320628 | TRUE | OK | 175.2 | 0.0232 | 0.06 | 0.6482 | 0.508 | 0.254 | 175.5 | 130.3 | 202.5 | 192.6 | 153.7 | 196.3 |
E017 | chr18 | 12320628 | 12320744 | TRUE | OK | 176.6 | 0.0188 | 0.1237 | 0.719 | 0.386 | 0.193 | 185.4 | 144.9 | 204.5 | 204.5 | 158.6 | 161.5 |
E018 | chr18 | 12324808 | 12324966 | TRUE | OK | 340.7 | 0.00618 | 0.05796 | 0.6435 | 0.284 | 0.142 | 372.7 | 344.1 | 351.5 | 333.6 | 325.1 | 317.1 |
E019 | chr18 | 12324966 | 12325066 | TRUE | OK | 317.9 | 0.00405 | 0.1866 | 0.7515 | 0.175 | 0.087 | 342.1 | 367.0 | 323.3 | 330.6 | 285.9 | 258.1 |
E020 | chr18 | 12325066 | 12325100 | TRUE | OK | 5479.0 | 0.00595 | 0.555 | 0.8732 | 0.090 | 0.045 | 6277.9 | 6245.9 | 5819.7 | 5247.9 | 4335.3 | 4947.3 |
E021 | chr18 | 12325100 | 12325124 | TRUE | OK | 4480.1 | 0.0045 | 0.6583 | 0.907 | -0.038 | -0.019 | 5200.2 | 5498.3 | 4800.4 | 4185.6 | 3326.6 | 3869.3 |
E022 | chr18 | 12325124 | 12325181 | TRUE | OK | 5766.5 | 0.00292 | 0.09061 | 0.6892 | -0.145 | -0.072 | 6681.2 | 7439.8 | 6347.5 | 5144.6 | 4211.9 | 4774.2 |
E023 | chr18 | 12325181 | 12325182 | TRUE | OK | 4965.0 | 0.00108 | 0.002392 | 0.2103 | -0.170 | -0.085 | 5625.2 | 6596.2 | 5526.6 | 4268.0 | 3702.7 | 4071.3 |
E024 | chr18 | 12325182 | 12325197 | TRUE | OK | 5230.4 | 0.00132 | 0.01192 | 0.4149 | -0.153 | -0.076 | 5914.1 | 6914.3 | 5784.5 | 4556.9 | 3891.7 | 4320.8 |
E025 | chr18 | 12325197 | 12325267 | TRUE | OK | 5993.5 | 0.00171 | 0.05607 | 0.6403 | -0.128 | -0.064 | 6828.1 | 7770.3 | 6586.2 | 5264.8 | 4533.1 | 4978.2 |
E026 | chr18 | 12325267 | 12325353 | TRUE | OK | 6315.0 | 0.00214 | 0.0743 | 0.6693 | -0.132 | -0.066 | 7220.5 | 8157.2 | 6957.9 | 5588.4 | 4721.1 | 5245.1 |
E027 | chr18 | 12325353 | 12325763 | TRUE | OK | 8512.6 | 0.0029 | 0.8647 | 0.9671 | 0.025 | 0.013 | 9528.8 | 10412.6 | 9056.9 | 7780.5 | 6792.3 | 7504.6 |
E028 | chr18 | 12325763 | 12325914 | TRUE | OK | 5145.8 | 0.000471 | 0.7318 | 0.93 | -0.013 | -0.006 | 5485.2 | 6786.0 | 5417.9 | 4663.1 | 4164.9 | 4357.5 |
E029 | chr18 | 12325914 | 12326332 | TRUE | OK | 12560.2 | 0.00523 | 0.1492 | 0.7343 | -0.195 | -0.097 | 12798.4 | 18743.9 | 13108.0 | 10670.5 | 9709.6 | 10330.6 |
E030 | chr18 | 12326332 | 12326563 | TRUE | OK | 4995.4 | 0.00419 | 0.1828 | 0.7501 | -0.161 | -0.080 | 5207.1 | 7522.2 | 5087.5 | 4262.0 | 3680.1 | 4213.5 |
E031 | chr18 | 12326563 | 12326619 | TRUE | OK | 118.9 | 0.0174 | 0.7921 | 0.9477 | -0.121 | -0.061 | 93.7 | 210.6 | 117.8 | 104.2 | 87.2 | 99.6 |
E032 | chr18 | 12329145 | 12329826 | TRUE | OK | 2977.9 | 0.00697 | 0.3558 | 0.8094 | 0.100 | 0.050 | 2708.6 | 4408.6 | 2808.1 | 2628.9 | 2625.4 | 2687.8 |
E033 | chr18 | 12337112 | 12337225 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0613 | 0.007192 | NA | NA | NA | 1.0 | 2.1 | 0.0 | 6.0 | 2.0 | 4.8 |
E034 | chr18 | 12344048 | 12344320 | TRUE | OK | 1237.0 | 0.0029 | 0.0005307 | 0.09186 | 0.337 | 0.169 | 1282.8 | 1379.5 | 1161.3 | 1176.5 | 1160.4 | 1261.7 |
J035 | chr18 | 12307769 | 12308261 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.111 | 0.1884 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 3.0 | 1.0 | 1.0 |
J036 | chr18 | 12308349 | 12308686 | TRUE | OK | 4998.3 | 0.0111 | 0.2561 | 0.7777 | 0.213 | 0.106 | 5660.7 | 5018.6 | 5504.5 | 4846.8 | 4238.3 | 4721.1 |
J037 | chr18 | 12308349 | 12310942 | TRUE | OK | 90.8 | 0.00216 | 6.143e-05 | 0.02207 | 0.589 | 0.295 | 82.8 | 89.7 | 83.6 | 94.3 | 93.0 | 101.5 |
J038 | chr18 | 12308795 | 12310942 | TRUE | OK | 5351.8 | 0.0124 | 0.1705 | 0.7443 | 0.267 | 0.134 | 6026.5 | 5243.8 | 5813.7 | 5200.2 | 4609.5 | 5217.1 |
J039 | chr18 | 12308795 | 12325066 | TRUE | OK | 124.6 | 0.00344 | 0.578 | 0.8808 | 0.089 | 0.044 | 144.0 | 139.7 | 131.9 | 123.1 | 96.9 | 112.2 |
J040 | chr18 | 12311053 | 12320535 | TRUE | OK | 98.5 | 0.0236 | 0.07046 | 0.6637 | 0.521 | 0.260 | 95.6 | 74.0 | 114.8 | 110.2 | 81.3 | 115.1 |
J041 | chr18 | 12311053 | 12320628 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0335 | 0.2675 | NA | NA | NA | 1.0 | 4.2 | 4.0 | 6.0 | 3.9 | 1.9 |
J042 | chr18 | 12311053 | 12324808 | TRUE | OK | 136.9 | 0.0195 | 0.1063 | 0.7041 | 0.410 | 0.205 | 159.7 | 109.5 | 142.0 | 130.1 | 141.0 | 139.2 |
J043 | chr18 | 12311053 | 12324966 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.4654 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J044 | chr18 | 12311053 | 12325066 | TRUE | OK | 3778.2 | 0.0116 | 0.212 | 0.7622 | 0.239 | 0.119 | 4390.7 | 3777.8 | 3947.3 | 3756.7 | 3105.3 | 3691.4 |
J045 | chr18 | 12311053 | 12329145 | TRUE | OK | 84.9 | 0.004 | 8.633e-11 | 2.411e-07 | 1.091 | 0.545 | 67.0 | 61.5 | 67.5 | 98.3 | 104.8 | 110.2 |
J046 | chr18 | 12311053 | 12337112 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0681 | 0.0984 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 3.0 | 1.0 | 1.9 |
J047 | chr18 | 12311053 | 12344048 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0711 | 0.2355 | NA | NA | NA | 0.0 | 1.0 | 3.0 | 1.0 | 2.9 | 2.9 |
J048 | chr18 | 12320744 | 12324808 | TRUE | OK | 26.0 | 0.00495 | 0.02033 | 0.4947 | 0.606 | 0.303 | 23.7 | 22.9 | 26.2 | 29.8 | 26.4 | 27.1 |
J049 | chr18 | 12320744 | 12325066 | TRUE | OK | 35.8 | 0.00481 | 0.6232 | 0.8956 | -0.108 | -0.054 | 41.4 | 46.9 | 38.3 | 37.7 | 28.4 | 22.2 |
J050 | chr18 | 12325100 | 12325182 | TRUE | OK | 31.8 | 0.0169 | 0.5397 | 0.8689 | -0.169 | -0.084 | 42.4 | 41.7 | 30.2 | 30.8 | 14.7 | 30.9 |
N051 | chr18 | 12308349 | 12325066 | TRUE | OK | 13.7 | 0.0208 | 0.02758 | 0.5404 | 0.896 | 0.448 | 15.8 | 8.3 | 10.1 | 20.8 | 11.8 | 15.5 |
N052 | chr18 | 12309915 | 12310942 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.8 | 0.0119 | 0.02686 | NA | NA | NA | 8.9 | 8.3 | 4.0 | 10.9 | 9.8 | 10.6 |
N053 | chr18 | 12329783 | 12337340 | TRUE | OK | 705.0 | 0.00837 | 0.2653 | 0.7809 | 0.151 | 0.075 | 611.3 | 1036.5 | 661.7 | 606.6 | 604.2 | 709.7 |
N054 | chr18 | 12337535 | 12340200 | TRUE | OK | 471.0 | 0.0115 | 0.05997 | 0.6481 | 0.350 | 0.175 | 567.9 | 461.9 | 416.0 | 464.6 | 436.8 | 478.6 |
N055 | chr18 | 12337535 | 12344131 | TRUE | OK | 14.9 | 0.00723 | 0.04192 | 0.6005 | 0.688 | 0.344 | 13.8 | 13.6 | 13.1 | 14.9 | 16.6 | 17.4 |
N056 | chr18 | 12340401 | 12344131 | TRUE | OK | 747.6 | 0.00358 | 0.001743 | 0.1778 | 0.346 | 0.173 | 792.8 | 813.3 | 694.0 | 716.8 | 690.4 | 778.3 |
N057 | chr18 | 12344247 | 12348272 | TRUE | OK | 746.0 | 0.00238 | 0.0001241 | 0.03605 | 0.359 | 0.179 | 729.6 | 844.6 | 712.1 | 692.0 | 704.1 | 793.8 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000176014.12 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |