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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr17 | 9250470 | 9250471 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.4 | 0.25 | 0.3073 | NA | NA | NA | 2.0 | 4.2 | 0.0 | 0.0 | 2.0 | 0.0 |
E002 | chr17 | 9250471 | 9250473 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.409 | 0.833 | NA | NA | NA | 2.0 | 6.3 | 0.0 | 0.0 | 7.8 | 1.9 |
E003 | chr17 | 9250473 | 9250486 | TRUE | OK | 35.5 | 0.0112 | 0.1651 | 0.7419 | -0.384 | -0.192 | 43.4 | 54.2 | 27.2 | 28.8 | 25.5 | 33.8 |
E004 | chr17 | 9250486 | 9250506 | TRUE | OK | 79.2 | 0.00822 | 0.1688 | 0.7438 | -0.306 | -0.153 | 81.8 | 127.2 | 62.4 | 66.5 | 68.5 | 68.6 |
E005 | chr17 | 9250506 | 9250645 | TRUE | OK | 318.3 | 0.00761 | 0.1503 | 0.7349 | -0.262 | -0.131 | 299.7 | 471.3 | 286.1 | 306.8 | 271.3 | 274.6 |
E006 | chr17 | 9273221 | 9273434 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.85 | 0.5784 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
E007 | chr17 | 9377888 | 9378551 | TRUE | OK | 11.5 | 0.0134 | 0.3471 | 0.8064 | 0.379 | 0.190 | 7.9 | 12.5 | 11.1 | 13.9 | 10.8 | 12.6 |
E008 | chr17 | 9378551 | 9378653 | TRUE | OK | 436.2 | 0.00774 | 0.6203 | 0.8946 | -0.110 | -0.055 | 390.5 | 621.5 | 383.8 | 407.0 | 409.3 | 405.1 |
E009 | chr17 | 9437796 | 9437889 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.1 | 0.0747 | 0.6944 | NA | NA | NA | 5.9 | 4.2 | 7.1 | 3.0 | 8.8 | 1.9 |
E010 | chr17 | 9491828 | 9491865 | TRUE | OK | 361.9 | 0.00291 | 0.1248 | 0.7199 | 0.172 | 0.086 | 317.5 | 466.1 | 309.2 | 361.4 | 359.4 | 357.7 |
E011 | chr17 | 9491865 | 9491921 | TRUE | OK | 312.8 | 0.00192 | 0.002932 | 0.2317 | 0.322 | 0.161 | 282.0 | 367.0 | 258.9 | 322.7 | 326.1 | 320.0 |
E012 | chr17 | 9505037 | 9505147 | TRUE | OK | 404.3 | 0.00227 | 0.00755 | 0.352 | 0.295 | 0.147 | 381.6 | 473.4 | 337.4 | 409.0 | 426.0 | 398.3 |
E013 | chr17 | 9505147 | 9505162 | TRUE | OK | 281.1 | 0.00295 | 0.2776 | 0.784 | 0.141 | 0.071 | 279.0 | 320.1 | 251.8 | 280.0 | 285.0 | 270.7 |
E014 | chr17 | 9540679 | 9540784 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E015 | chr17 | 9545171 | 9545282 | TRUE | OK | 386.9 | 0.00288 | 0.1428 | 0.7314 | 0.180 | 0.090 | 372.7 | 444.2 | 350.5 | 384.2 | 390.7 | 379.0 |
E016 | chr17 | 9552798 | 9553223 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.208 | 0.4066 | NA | NA | NA | 1.0 | 2.1 | 0.0 | 1.0 | 0.0 | 0.0 |
E017 | chr17 | 9556896 | 9557433 | TRUE | OK | 29.9 | 0.0117 | 0.1027 | 0.7006 | -0.449 | -0.225 | 37.5 | 32.3 | 37.3 | 20.8 | 26.4 | 25.1 |
E018 | chr17 | 9557433 | 9557510 | TRUE | OK | 392.2 | 0.00574 | 0.6216 | 0.895 | 0.086 | 0.043 | 388.5 | 447.3 | 371.7 | 382.2 | 376.0 | 387.7 |
E019 | chr17 | 9557510 | 9557528 | TRUE | OK | 318.4 | 0.0068 | 0.5413 | 0.8693 | 0.114 | 0.057 | 326.4 | 348.3 | 297.1 | 320.7 | 308.5 | 309.4 |
E020 | chr17 | 9568370 | 9568404 | TRUE | OK | 317.9 | 0.00763 | 0.5853 | 0.8831 | 0.111 | 0.056 | 315.5 | 339.9 | 315.3 | 315.7 | 315.3 | 305.5 |
E021 | chr17 | 9568404 | 9568458 | TRUE | OK | 284.4 | 0.00859 | 0.585 | 0.883 | 0.117 | 0.059 | 282.0 | 298.2 | 286.1 | 273.0 | 291.8 | 275.5 |
E022 | chr17 | 9568458 | 9568470 | TRUE | OK | 189.9 | 0.0139 | 0.6823 | 0.9144 | 0.111 | 0.056 | 200.2 | 183.5 | 193.4 | 186.6 | 183.1 | 192.4 |
E023 | chr17 | 9569497 | 9569942 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0713 | 0.8372 | NA | NA | NA | 2.0 | 2.1 | 2.0 | 1.0 | 2.9 | 1.0 |
E024 | chr17 | 9575791 | 9575811 | TRUE | OK | 176.8 | 0.0173 | 0.7629 | 0.9392 | 0.095 | 0.048 | 192.3 | 165.8 | 181.3 | 183.7 | 163.5 | 174.0 |
E025 | chr17 | 9575811 | 9575820 | TRUE | OK | 70.6 | 0.012 | 0.8643 | 0.967 | -0.020 | -0.010 | 76.9 | 69.9 | 75.5 | 77.4 | 62.7 | 60.9 |
E026 | chr17 | 9575820 | 9575835 | TRUE | OK | 36.7 | 0.0134 | 0.2014 | 0.7585 | -0.336 | -0.168 | 48.3 | 39.6 | 39.3 | 35.7 | 33.3 | 24.2 |
E027 | chr17 | 9575835 | 9575837 | TRUE | OK | 12.3 | 0.0461 | 0.1489 | 0.7343 | -0.721 | -0.360 | 22.7 | 10.4 | 14.1 | 10.9 | 7.8 | 7.7 |
E028 | chr17 | 9575837 | 9575912 | TRUE | OK | 12.8 | 0.0424 | 0.2395 | 0.772 | -0.568 | -0.284 | 22.7 | 10.4 | 14.1 | 10.9 | 8.8 | 9.7 |
E029 | chr17 | 9576539 | 9576591 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0407 | 0.2682 | NA | NA | NA | 2.0 | 5.2 | 1.0 | 4.0 | 4.9 | 3.9 |
J030 | chr17 | 9250645 | 9273221 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J031 | chr17 | 9250645 | 9378551 | TRUE | OK | 292.7 | 0.00782 | 0.1427 | 0.7314 | -0.271 | -0.135 | 275.1 | 436.9 | 263.9 | 282.9 | 242.9 | 254.3 |
J032 | chr17 | 9378653 | 9437796 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.7 | 0.0307 | 0.9253 | NA | NA | NA | 3.0 | 3.1 | 5.0 | 3.0 | 5.9 | 1.9 |
J033 | chr17 | 9378653 | 9491828 | TRUE | OK | 304.8 | 0.004 | 0.3917 | 0.821 | 0.099 | 0.049 | 262.3 | 408.7 | 262.9 | 292.9 | 298.7 | 303.6 |
J034 | chr17 | 9491921 | 9505037 | TRUE | OK | 228.4 | 0.00159 | 4.539e-05 | 0.0176 | 0.452 | 0.226 | 202.1 | 256.5 | 174.2 | 244.2 | 251.7 | 241.7 |
J035 | chr17 | 9491921 | 9568370 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.252 | 0.2803 | NA | NA | NA | 0.0 | 1.0 | 3.0 | 1.0 | 0.0 | 0.0 |
J036 | chr17 | 9505162 | 9545171 | TRUE | OK | 256.5 | 0.00218 | 0.2655 | 0.781 | 0.134 | 0.067 | 254.4 | 295.1 | 227.6 | 252.2 | 258.5 | 251.4 |
J037 | chr17 | 9505162 | 9568370 | TRUE | OK | 11.6 | 0.0157 | 0.4251 | 0.8314 | 0.334 | 0.167 | 6.9 | 10.4 | 15.1 | 12.9 | 14.7 | 9.7 |
J038 | chr17 | 9540784 | 9545171 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J039 | chr17 | 9545282 | 9557433 | TRUE | OK | 237.9 | 0.00294 | 0.1759 | 0.7469 | 0.175 | 0.087 | 225.8 | 273.2 | 213.5 | 242.2 | 227.2 | 245.6 |
J040 | chr17 | 9553223 | 9557433 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.481 | 0.3501 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 0.0 | 0.0 | 0.0 |
J041 | chr17 | 9557528 | 9568370 | TRUE | OK | 296.8 | 0.00726 | 0.6115 | 0.8916 | 0.101 | 0.050 | 304.7 | 320.1 | 283.0 | 296.8 | 285.9 | 290.1 |
J042 | chr17 | 9557528 | 9575791 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.171 | 0.1641 | NA | NA | NA | 4.9 | 0.0 | 1.0 | 6.9 | 2.9 | 3.9 |
J043 | chr17 | 9568470 | 9569497 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.572 | 0.9902 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 0.0 | 2.0 | 0.0 |
J044 | chr17 | 9568470 | 9575791 | TRUE | OK | 172.0 | 0.0166 | 0.8601 | 0.9659 | 0.064 | 0.032 | 186.4 | 163.7 | 179.3 | 173.7 | 158.6 | 170.2 |
J045 | chr17 | 9575912 | 9576539 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.7 | 0.0369 | 0.1349 | NA | NA | NA | 1.0 | 3.1 | 1.0 | 4.0 | 4.9 | 1.9 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000170310.15 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |