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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr19 | 4472296 | 4472305 | TRUE | OK | 111.5 | 0.00594 | 0.02631 | 0.5328 | 0.391 | 0.195 | 101.6 | 95.9 | 90.7 | 111.2 | 144.0 | 125.7 |
E002 | chr19 | 4472305 | 4472307 | TRUE | OK | 123.7 | 0.00407 | 0.008023 | 0.3608 | 0.410 | 0.205 | 108.5 | 107.4 | 101.7 | 126.1 | 155.7 | 143.1 |
E003 | chr19 | 4472307 | 4472422 | TRUE | OK | 333.0 | 0.00697 | 0.3296 | 0.8009 | 0.160 | 0.080 | 322.4 | 300.3 | 317.3 | 339.5 | 374.1 | 344.2 |
E004 | chr19 | 4474891 | 4474911 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.684 | 0.9173 | NA | NA | NA | 4.9 | 0.0 | 0.0 | 1.0 | 2.9 | 0.0 |
E005 | chr19 | 4474911 | 4475030 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.44 | 0.9209 | NA | NA | NA | 3.0 | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 |
E006 | chr19 | 4475030 | 4475274 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.0428 | 0.9741 | NA | NA | NA | 9.9 | 8.3 | 7.1 | 8.9 | 13.7 | 3.9 |
E007 | chr19 | 4475274 | 4475348 | TRUE | OK | 490.9 | 0.00971 | 0.363 | 0.8116 | 0.167 | 0.083 | 483.1 | 424.4 | 477.4 | 514.3 | 516.1 | 529.8 |
E008 | chr19 | 4475348 | 4475351 | TRUE | OK | 402.9 | 0.0112 | 0.4314 | 0.8334 | 0.155 | 0.078 | 404.3 | 342.0 | 393.8 | 433.8 | 407.4 | 436.0 |
E009 | chr19 | 4475444 | 4475583 | TRUE | OK | 778.6 | 0.00895 | 0.3379 | 0.8033 | 0.169 | 0.085 | 754.3 | 701.8 | 745.3 | 836.9 | 763.8 | 869.2 |
E010 | chr19 | 4486382 | 4486385 | TRUE | OK | 11.3 | 0.0262 | 0.8478 | 0.9626 | 0.105 | 0.053 | 9.9 | 10.4 | 12.1 | 15.9 | 5.9 | 13.5 |
E011 | chr19 | 4488675 | 4488679 | TRUE | OK | 505.7 | 0.00984 | 0.2922 | 0.7894 | 0.197 | 0.098 | 487.1 | 444.2 | 481.5 | 547.0 | 484.7 | 589.8 |
E012 | chr19 | 4488679 | 4488836 | TRUE | OK | 838.7 | 0.00984 | 0.2511 | 0.7756 | 0.209 | 0.104 | 804.6 | 742.4 | 796.7 | 925.3 | 827.5 | 935.9 |
E013 | chr19 | 4488836 | 4488876 | TRUE | OK | 623.3 | 0.00374 | 0.06408 | 0.6536 | 0.218 | 0.109 | 556.1 | 593.3 | 582.2 | 676.1 | 666.9 | 665.2 |
E014 | chr19 | 4491565 | 4491682 | TRUE | OK | 736.0 | 0.0048 | 0.5241 | 0.8635 | 0.087 | 0.044 | 671.5 | 738.2 | 725.2 | 762.5 | 794.2 | 724.2 |
E015 | chr19 | 4491763 | 4491835 | TRUE | OK | 744.4 | 0.00307 | 0.7444 | 0.9338 | 0.040 | 0.020 | 676.4 | 782.0 | 733.3 | 741.6 | 793.2 | 739.6 |
E016 | chr19 | 4493702 | 4493762 | TRUE | OK | 684.5 | 0.00219 | 0.7183 | 0.9256 | -0.026 | -0.013 | 651.8 | 734.1 | 670.8 | 640.3 | 706.1 | 703.9 |
E017 | chr19 | 4493762 | 4493862 | TRUE | OK | 813.2 | 0.00139 | 0.8066 | 0.9516 | -0.014 | -0.007 | 770.1 | 892.6 | 771.5 | 771.4 | 841.2 | 832.4 |
E018 | chr19 | 4493981 | 4494057 | TRUE | OK | 836.3 | 0.00104 | 0.6782 | 0.913 | 0.033 | 0.016 | 792.8 | 915.5 | 760.5 | 818.1 | 854.9 | 876.0 |
E019 | chr19 | 4494165 | 4494475 | TRUE | OK | 1496.5 | 0.0021 | 0.4841 | 0.8509 | 0.065 | 0.032 | 1432.7 | 1605.8 | 1346.7 | 1494.1 | 1473.8 | 1626.2 |
E020 | chr19 | 4496301 | 4496332 | TRUE | OK | 697.5 | 0.00293 | 0.3384 | 0.8035 | 0.106 | 0.053 | 661.6 | 705.9 | 643.6 | 714.8 | 686.5 | 772.5 |
E021 | chr19 | 4496332 | 4496405 | TRUE | OK | 839.6 | 0.00314 | 0.5643 | 0.8764 | 0.067 | 0.034 | 816.4 | 854.0 | 781.6 | 864.7 | 844.1 | 876.9 |
E022 | chr19 | 4496918 | 4497957 | TRUE | OK | 52.9 | 0.00513 | 0.3368 | 0.803 | 0.199 | 0.100 | 46.3 | 52.1 | 48.3 | 56.6 | 64.6 | 49.3 |
E023 | chr19 | 4497957 | 4498031 | TRUE | OK | 899.9 | 0.00191 | 0.3802 | 0.8171 | 0.079 | 0.040 | 871.6 | 951.0 | 796.7 | 896.5 | 915.6 | 967.8 |
E024 | chr19 | 4498305 | 4498361 | TRUE | OK | 832.2 | 0.00132 | 0.351 | 0.8077 | 0.072 | 0.036 | 787.8 | 916.6 | 723.2 | 851.8 | 828.5 | 885.6 |
E025 | chr19 | 4498361 | 4498376 | TRUE | OK | 724.5 | 0.00293 | 0.7459 | 0.9342 | 0.028 | 0.014 | 690.2 | 854.0 | 597.3 | 745.6 | 697.2 | 762.8 |
E026 | chr19 | 4498813 | 4498915 | TRUE | OK | 1075.9 | 0.00381 | 0.9263 | 0.9826 | -0.001 | -0.000 | 1002.8 | 1319.0 | 886.4 | 1082.1 | 1035.1 | 1130.2 |
E027 | chr19 | 4499490 | 4499588 | TRUE | OK | 1069.5 | 0.00601 | 0.7094 | 0.9227 | 0.031 | 0.015 | 981.1 | 1340.9 | 838.0 | 1073.2 | 1053.7 | 1130.2 |
E028 | chr19 | 4499588 | 4499604 | TRUE | OK | 758.9 | 0.00875 | 0.7695 | 0.9411 | 0.026 | 0.013 | 695.1 | 972.9 | 576.1 | 741.6 | 711.9 | 855.7 |
E029 | chr19 | 4499604 | 4499628 | TRUE | OK | 863.5 | 0.00964 | 0.7858 | 0.9459 | -0.072 | -0.036 | 798.7 | 1156.4 | 673.8 | 814.1 | 794.2 | 943.6 |
E030 | chr19 | 4499628 | 4499704 | TRUE | OK | 1011.1 | 0.0057 | 0.4635 | 0.8439 | -0.113 | -0.056 | 929.8 | 1322.2 | 860.2 | 957.0 | 920.5 | 1077.1 |
E031 | chr19 | 4501190 | 4501317 | TRUE | OK | 1053.3 | 0.00437 | 0.2023 | 0.7587 | -0.165 | -0.082 | 966.3 | 1388.9 | 932.7 | 1000.7 | 961.7 | 1069.3 |
E032 | chr19 | 4501317 | 4501461 | TRUE | OK | 111.0 | 0.00289 | 5.579e-06 | 0.003443 | -0.658 | -0.329 | 131.1 | 157.5 | 115.8 | 88.4 | 78.3 | 94.7 |
E033 | chr19 | 4501461 | 4501578 | TRUE | OK | 81.0 | 0.00355 | 1.084e-05 | 0.005892 | -0.728 | -0.364 | 88.7 | 109.5 | 102.7 | 58.6 | 57.8 | 68.6 |
E034 | chr19 | 4501578 | 4501668 | TRUE | OK | 67.7 | 0.00542 | 0.006428 | 0.3282 | -0.507 | -0.254 | 75.9 | 78.2 | 82.6 | 47.7 | 56.8 | 64.8 |
E035 | chr19 | 4501668 | 4501910 | TRUE | OK | 130.4 | 0.00421 | 0.01262 | 0.4222 | -0.371 | -0.186 | 136.1 | 174.1 | 127.9 | 94.3 | 114.6 | 135.4 |
E036 | chr19 | 4501910 | 4501913 | TRUE | OK | 467.2 | 0.00417 | 0.1835 | 0.7504 | -0.175 | -0.087 | 437.8 | 627.7 | 405.9 | 433.8 | 423.0 | 474.7 |
E037 | chr19 | 4501913 | 4502033 | TRUE | OK | 766.7 | 0.00764 | 0.2085 | 0.7609 | -0.219 | -0.110 | 679.4 | 1085.5 | 672.8 | 682.0 | 705.1 | 775.4 |
E038 | chr19 | 4502033 | 4502104 | TRUE | OK | 311.5 | 0.015 | 0.06961 | 0.6619 | -0.447 | -0.224 | 281.0 | 519.3 | 264.9 | 252.2 | 264.4 | 287.2 |
E039 | chr19 | 4502104 | 4502201 | TRUE | OK | 163.3 | 0.0181 | 0.08558 | 0.6843 | -0.485 | -0.242 | 144.0 | 285.7 | 137.0 | 134.0 | 145.9 | 133.4 |
E040 | chr19 | 4502201 | 4502207 | TRUE | OK | 13.8 | 0.0131 | 0.1612 | 0.7396 | -0.524 | -0.262 | 15.8 | 21.9 | 11.1 | 8.9 | 10.8 | 14.5 |
E041 | chr19 | 4502207 | 4502208 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0298 | 0.2474 | NA | NA | NA | 6.9 | 9.4 | 5.0 | 2.0 | 3.9 | 7.7 |
J042 | chr19 | 4472422 | 4475274 | TRUE | OK | 323.2 | 0.00585 | 0.2807 | 0.7852 | 0.165 | 0.082 | 311.6 | 293.0 | 306.2 | 329.6 | 359.4 | 339.4 |
J043 | chr19 | 4475030 | 4475274 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J044 | chr19 | 4475351 | 4475444 | TRUE | OK | 396.6 | 0.0111 | 0.4961 | 0.8544 | 0.135 | 0.068 | 400.3 | 339.9 | 389.8 | 424.9 | 394.6 | 430.2 |
J045 | chr19 | 4475583 | 4486382 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.5384 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J046 | chr19 | 4475583 | 4488675 | TRUE | OK | 499.2 | 0.0109 | 0.2887 | 0.7881 | 0.207 | 0.104 | 480.2 | 432.7 | 476.4 | 543.1 | 474.0 | 588.8 |
J047 | chr19 | 4486385 | 4488679 | TRUE | OK | 10.9 | 0.0379 | 0.8742 | 0.9694 | 0.111 | 0.055 | 9.9 | 9.4 | 12.1 | 15.9 | 4.9 | 13.5 |
J048 | chr19 | 4488876 | 4491565 | TRUE | OK | 500.7 | 0.00349 | 0.08648 | 0.6854 | 0.200 | 0.100 | 434.8 | 488.0 | 474.4 | 549.0 | 545.5 | 512.4 |
J049 | chr19 | 4491682 | 4491763 | TRUE | OK | 516.5 | 0.00425 | 0.3839 | 0.8184 | 0.112 | 0.056 | 448.6 | 523.4 | 512.7 | 529.2 | 573.9 | 511.5 |
J050 | chr19 | 4491835 | 4493702 | TRUE | OK | 468.1 | 0.0019 | 0.6105 | 0.8913 | -0.040 | -0.020 | 443.7 | 497.4 | 472.4 | 444.8 | 467.1 | 483.4 |
J051 | chr19 | 4493862 | 4493981 | TRUE | OK | 553.0 | 0.0011 | 0.7833 | 0.9452 | 0.025 | 0.012 | 540.3 | 605.8 | 489.5 | 532.1 | 562.1 | 587.8 |
J052 | chr19 | 4494057 | 4494165 | TRUE | OK | 670.1 | 0.00086 | 0.1931 | 0.7551 | 0.094 | 0.047 | 618.2 | 718.4 | 603.3 | 651.3 | 693.3 | 735.8 |
J053 | chr19 | 4494475 | 4496301 | TRUE | OK | 551.0 | 0.00325 | 0.6425 | 0.9019 | 0.058 | 0.029 | 551.2 | 571.4 | 489.5 | 548.0 | 529.8 | 615.9 |
J054 | chr19 | 4496405 | 4496918 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.0 | 0.0382 | 0.2533 | NA | NA | NA | 2.0 | 5.2 | 9.1 | 9.9 | 5.9 | 9.7 |
J055 | chr19 | 4496405 | 4497957 | TRUE | OK | 622.8 | 0.00303 | 0.6331 | 0.8986 | 0.057 | 0.028 | 628.1 | 636.1 | 559.0 | 620.5 | 625.8 | 667.1 |
J056 | chr19 | 4498031 | 4498305 | TRUE | OK | 628.6 | 0.00111 | 0.2191 | 0.7645 | 0.096 | 0.048 | 599.5 | 661.1 | 557.0 | 641.3 | 639.5 | 672.9 |
J057 | chr19 | 4498376 | 4498813 | TRUE | OK | 669.9 | 0.00262 | 0.5251 | 0.8639 | 0.058 | 0.029 | 620.2 | 788.3 | 553.0 | 700.9 | 637.5 | 719.3 |
J058 | chr19 | 4498915 | 4499490 | TRUE | OK | 776.6 | 0.00486 | 0.8283 | 0.9573 | 0.010 | 0.005 | 714.9 | 979.1 | 614.4 | 775.4 | 762.9 | 813.1 |
J059 | chr19 | 4499604 | 4501668 | TRUE | OK | 10.3 | 0.0107 | 0.7643 | 0.9396 | 0.121 | 0.060 | 9.9 | 13.6 | 6.0 | 8.9 | 11.8 | 11.6 |
J060 | chr19 | 4499704 | 4501190 | TRUE | OK | 722.2 | 0.00375 | 0.3648 | 0.812 | -0.112 | -0.056 | 660.6 | 935.3 | 631.5 | 685.0 | 656.1 | 764.8 |
J061 | chr19 | 4499704 | 4501910 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.12 | 0.3166 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 0.0 | 0.0 | 1.0 |
J062 | chr19 | 4501317 | 4501461 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.123 | 0.03004 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.9 |
J063 | chr19 | 4501317 | 4501910 | TRUE | OK | 405.1 | 0.00376 | 0.4026 | 0.8249 | -0.113 | -0.056 | 369.8 | 537.0 | 345.5 | 393.1 | 374.1 | 410.9 |
J064 | chr19 | 4501317 | 4501913 | TRUE | OK | 138.9 | 0.00189 | 0.8401 | 0.9608 | -0.026 | -0.013 | 121.3 | 175.2 | 121.9 | 128.1 | 141.0 | 146.0 |
N065 | chr19 | 4491835 | 4493705 | TRUE | OK | 23.4 | 0.00561 | 0.9834 | 0.9959 | -0.004 | -0.002 | 24.7 | 27.1 | 18.1 | 26.8 | 22.5 | 21.3 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000167674.15 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |