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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr4 | 74114173 | 74114383 | TRUE | OK | 11.6 | 0.0169 | 0.1344 | 0.7262 | 0.625 | 0.312 | 10.8 | 8.3 | 11.1 | 17.9 | 7.8 | 13.5 |
E002 | chr4 | 74114487 | 74114657 | TRUE | OK | 375.0 | 0.00406 | 0.149 | 0.7343 | 0.186 | 0.093 | 381.6 | 374.3 | 405.9 | 389.2 | 312.4 | 386.7 |
E003 | chr4 | 74123272 | 74123338 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.465 | 0.7686 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 1.0 | 0.0 | 0.0 |
E004 | chr4 | 74123338 | 74123343 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.465 | 0.7686 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 1.0 | 0.0 | 0.0 |
E005 | chr4 | 74123343 | 74123423 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.425 | 0.8053 | NA | NA | NA | 0.0 | 0.0 | 3.0 | 2.0 | 0.0 | 1.0 |
E006 | chr4 | 74125437 | 74125439 | TRUE | OK | 10.1 | 0.0162 | 0.08699 | 0.6855 | 0.735 | 0.367 | 7.9 | 8.3 | 9.1 | 10.9 | 14.7 | 9.7 |
E007 | chr4 | 74125439 | 74125517 | TRUE | OK | 409.7 | 0.00257 | 0.271 | 0.7825 | 0.122 | 0.061 | 424.0 | 442.1 | 427.1 | 421.9 | 330.0 | 412.8 |
E008 | chr4 | 74143392 | 74143467 | TRUE | OK | 323.4 | 0.00304 | 0.6816 | 0.9142 | -0.047 | -0.024 | 320.5 | 382.7 | 365.6 | 301.8 | 268.3 | 301.7 |
E009 | chr4 | 74158107 | 74158111 | TRUE | OK | 11.5 | 0.0437 | 0.8729 | 0.9691 | 0.079 | 0.039 | 9.9 | 18.8 | 8.1 | 16.9 | 7.8 | 7.7 |
E010 | chr4 | 74158111 | 74158117 | TRUE | OK | 12.2 | 0.0351 | 0.8419 | 0.9612 | 0.085 | 0.043 | 9.9 | 19.8 | 9.1 | 16.9 | 8.8 | 8.7 |
E011 | chr4 | 74158117 | 74158149 | TRUE | OK | 37.8 | 0.0092 | 0.6583 | 0.907 | -0.117 | -0.059 | 34.5 | 56.3 | 37.3 | 37.7 | 29.4 | 31.9 |
E012 | chr4 | 74158149 | 74158172 | TRUE | OK | 49.8 | 0.0127 | 0.8634 | 0.9668 | -0.060 | -0.030 | 47.3 | 76.1 | 42.3 | 47.7 | 39.2 | 46.4 |
E013 | chr4 | 74158172 | 74158174 | TRUE | OK | 50.0 | 0.0144 | 0.7936 | 0.9481 | -0.089 | -0.045 | 47.3 | 78.2 | 42.3 | 47.7 | 39.2 | 45.4 |
E014 | chr4 | 74158174 | 74158281 | TRUE | OK | 90.1 | 0.00888 | 0.3711 | 0.8139 | 0.168 | 0.084 | 94.7 | 115.7 | 68.5 | 96.3 | 83.2 | 82.2 |
E015 | chr4 | 74160054 | 74160088 | TRUE | OK | 483.4 | 0.00136 | 0.4768 | 0.8485 | 0.063 | 0.031 | 511.7 | 545.3 | 494.5 | 481.5 | 400.5 | 467.0 |
E016 | chr4 | 74160088 | 74160514 | TRUE | OK | 722.2 | 0.00628 | 0.00108 | 0.1379 | -0.466 | -0.233 | 811.5 | 995.8 | 789.7 | 642.3 | 499.4 | 594.6 |
E017 | chr4 | 74160514 | 74160770 | TRUE | OK | 260.7 | 0.00166 | 3.883e-05 | 0.01549 | -0.426 | -0.213 | 320.5 | 321.2 | 309.2 | 211.5 | 197.8 | 204.0 |
E018 | chr4 | 74160770 | 74161779 | TRUE | OK | 470.1 | 0.00538 | 0.07105 | 0.6646 | -0.248 | -0.124 | 591.6 | 500.5 | 536.8 | 413.0 | 386.8 | 391.6 |
E019 | chr4 | 74161779 | 74162106 | TRUE | OK | 215.7 | 0.00338 | 0.674 | 0.9116 | -0.053 | -0.026 | 222.8 | 269.0 | 222.6 | 189.6 | 170.4 | 219.5 |
E020 | chr4 | 74162106 | 74162253 | TRUE | OK | 86.6 | 0.00413 | 0.2069 | 0.7603 | 0.213 | 0.106 | 96.6 | 90.7 | 76.5 | 82.4 | 73.4 | 99.6 |
E021 | chr4 | 74174505 | 74174690 | TRUE | OK | 188.6 | 0.0183 | 0.05135 | 0.6285 | 0.465 | 0.233 | 206.1 | 136.6 | 188.4 | 172.7 | 203.7 | 224.3 |
E022 | chr4 | 74175280 | 74175403 | TRUE | OK | 137.5 | 0.0163 | 0.03016 | 0.5524 | 0.502 | 0.251 | 148.9 | 95.9 | 136.0 | 135.0 | 154.7 | 154.7 |
E023 | chr4 | 74180686 | 74180866 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.8 | 0.0171 | 0.5666 | NA | NA | NA | 9.9 | 7.3 | 9.1 | 6.9 | 8.8 | 10.6 |
E024 | chr4 | 74181685 | 74181750 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.7 | 0.0457 | 0.111 | NA | NA | NA | 10.8 | 5.2 | 4.0 | 3.0 | 2.9 | 1.9 |
E025 | chr4 | 74181750 | 74181791 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.128 | 0.2336 | NA | NA | NA | 8.9 | 3.1 | 3.0 | 4.0 | 2.0 | 0.0 |
E026 | chr4 | 74182726 | 74183931 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.8 | 0.0163 | 0.192 | NA | NA | NA | 7.9 | 6.3 | 9.1 | 9.9 | 8.8 | 10.6 |
E027 | chr4 | 74194039 | 74195838 | TRUE | OK | 18.9 | 0.0338 | 0.01972 | 0.4893 | 0.960 | 0.480 | 20.7 | 7.3 | 15.1 | 24.8 | 16.6 | 29.0 |
E028 | chr4 | 74199793 | 74199946 | TRUE | OK | 178.0 | 0.0148 | 0.04144 | 0.599 | 0.436 | 0.218 | 213.0 | 131.4 | 161.2 | 193.6 | 180.2 | 188.5 |
E029 | chr4 | 74201262 | 74201370 | TRUE | OK | 170.0 | 0.0192 | 0.1693 | 0.744 | 0.318 | 0.159 | 215.9 | 124.1 | 162.2 | 169.8 | 168.4 | 179.8 |
E030 | chr4 | 74224067 | 74224147 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.256 | 0.05672 | NA | NA | NA | 2.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 |
E031 | chr4 | 74225301 | 74225394 | TRUE | OK | 145.1 | 0.0235 | 0.08802 | 0.6868 | 0.442 | 0.221 | 179.5 | 94.9 | 136.0 | 155.9 | 136.1 | 168.2 |
E032 | chr4 | 74241566 | 74242197 | TRUE | OK | 91.3 | 0.0111 | 0.2733 | 0.783 | 0.227 | 0.114 | 86.8 | 119.9 | 70.5 | 102.3 | 73.4 | 94.7 |
E033 | chr4 | 74242197 | 74242210 | TRUE | OK | 9.6 | 0.0218 | 0.3907 | 0.8206 | -0.400 | -0.200 | 15.8 | 11.5 | 8.1 | 7.9 | 9.8 | 4.8 |
E034 | chr4 | 74280240 | 74280443 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.15 | 0.4309 | NA | NA | NA | 3.0 | 1.0 | 1.0 | 0.0 | 2.9 | 4.8 |
E035 | chr4 | 74281424 | 74281550 | TRUE | OK | 95.4 | 0.00778 | 0.07427 | 0.6692 | 0.341 | 0.171 | 102.5 | 75.1 | 100.7 | 106.2 | 88.1 | 99.6 |
E036 | chr4 | 74288300 | 74288465 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.12 | 0.2423 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 1.0 | 1.0 | 2.9 |
E037 | chr4 | 74293488 | 74293675 | TRUE | OK | 41.0 | 0.0304 | 0.1294 | 0.7229 | 0.498 | 0.249 | 40.4 | 21.9 | 50.4 | 42.7 | 41.1 | 49.3 |
E038 | chr4 | 74301696 | 74301990 | TRUE | OK | 97.5 | 0.00322 | 0.00357 | 0.253 | 0.449 | 0.225 | 79.9 | 100.1 | 94.7 | 106.2 | 96.9 | 107.3 |
E039 | chr4 | 74301990 | 74302598 | TRUE | OK | 156.2 | 0.0139 | 0.3325 | 0.8017 | 0.194 | 0.097 | 144.9 | 209.6 | 125.9 | 136.0 | 144.9 | 176.0 |
E040 | chr4 | 74302598 | 74302635 | TRUE | OK | 65.4 | 0.0117 | 0.22 | 0.7648 | 0.283 | 0.141 | 58.2 | 82.4 | 54.4 | 54.6 | 62.7 | 80.2 |
E041 | chr4 | 74302635 | 74303092 | TRUE | OK | 110.5 | 0.0186 | 0.5399 | 0.8689 | 0.127 | 0.064 | 97.6 | 158.5 | 90.7 | 91.3 | 113.6 | 111.2 |
E042 | chr4 | 74303092 | 74303099 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.246 | 0.318 | NA | NA | NA | 1.0 | 0.0 | 2.0 | 0.0 | 2.0 | 4.8 |
J043 | chr4 | 74114383 | 74114487 | TRUE | OK | 9.8 | 0.0116 | 0.2824 | 0.7857 | 0.453 | 0.227 | 10.8 | 7.3 | 9.1 | 12.9 | 6.9 | 11.6 |
J044 | chr4 | 74114657 | 74125439 | TRUE | OK | 291.1 | 0.00337 | 0.2184 | 0.7644 | 0.156 | 0.078 | 300.7 | 293.0 | 314.3 | 303.8 | 236.0 | 298.8 |
J045 | chr4 | 74123423 | 74125439 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.551 | 0.6199 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
J046 | chr4 | 74125517 | 74143392 | TRUE | OK | 199.2 | 0.00325 | 0.8462 | 0.9622 | -0.024 | -0.012 | 192.3 | 230.4 | 231.7 | 183.7 | 165.5 | 191.4 |
J047 | chr4 | 74125517 | 74160054 | TRUE | OK | 107.3 | 0.0166 | 0.158 | 0.738 | 0.380 | 0.190 | 108.5 | 104.3 | 96.7 | 144.0 | 72.5 | 118.0 |
J048 | chr4 | 74143467 | 74160054 | TRUE | OK | 195.2 | 0.00243 | 0.2352 | 0.7708 | -0.143 | -0.071 | 201.1 | 233.6 | 228.6 | 163.8 | 161.6 | 182.7 |
J049 | chr4 | 74143467 | 74174505 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.0 | 0.0135 | 0.0939 | NA | NA | NA | 9.9 | 14.6 | 8.1 | 6.0 | 4.9 | 4.8 |
J050 | chr4 | 74158281 | 74160054 | TRUE | OK | 71.5 | 0.00912 | 0.4301 | 0.8331 | 0.156 | 0.078 | 80.9 | 88.6 | 52.4 | 75.5 | 68.5 | 62.8 |
J051 | chr4 | 74158281 | 74174505 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.5 | 0.0428 | 0.1963 | NA | NA | NA | 3.0 | 10.4 | 3.0 | 6.9 | 5.9 | 9.7 |
J052 | chr4 | 74160088 | 74161779 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.1 | 0.0359 | 0.8515 | NA | NA | NA | 6.9 | 3.1 | 6.0 | 4.0 | 7.8 | 2.9 |
J053 | chr4 | 74160088 | 74174505 | TRUE | OK | 58.4 | 0.021 | 0.01072 | 0.4018 | 0.736 | 0.368 | 57.2 | 34.4 | 55.4 | 56.6 | 63.7 | 83.1 |
J054 | chr4 | 74174690 | 74175280 | TRUE | OK | 88.5 | 0.0249 | 0.08866 | 0.6875 | 0.476 | 0.238 | 99.6 | 54.2 | 92.7 | 86.4 | 94.0 | 104.4 |
J055 | chr4 | 74175403 | 74180686 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0306 | 0.2658 | NA | NA | NA | 1.0 | 4.2 | 3.0 | 4.0 | 4.9 | 2.9 |
J056 | chr4 | 74175403 | 74199793 | TRUE | OK | 70.0 | 0.0115 | 0.1186 | 0.7148 | 0.348 | 0.174 | 85.8 | 54.2 | 63.5 | 66.5 | 73.4 | 76.4 |
J057 | chr4 | 74180866 | 74181685 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.191 | 0.3703 | NA | NA | NA | 5.9 | 1.0 | 1.0 | 0.0 | 1.0 | 1.9 |
J058 | chr4 | 74181791 | 74182726 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J059 | chr4 | 74195838 | 74199793 | TRUE | OK | 9.7 | 0.0394 | 0.4812 | 0.8498 | 0.357 | 0.178 | 11.8 | 4.2 | 12.1 | 11.9 | 5.9 | 12.6 |
J060 | chr4 | 74199946 | 74201262 | TRUE | OK | 115.9 | 0.0127 | 0.02283 | 0.5117 | 0.485 | 0.242 | 137.1 | 84.5 | 100.7 | 129.1 | 117.5 | 126.7 |
J061 | chr4 | 74201370 | 74225301 | TRUE | OK | 109.3 | 0.0221 | 0.2368 | 0.7712 | 0.299 | 0.150 | 138.0 | 74.0 | 111.8 | 114.2 | 100.9 | 117.0 |
J062 | chr4 | 74224147 | 74225301 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.171 | 0.07417 | NA | NA | NA | 2.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 |
J063 | chr4 | 74225394 | 74241566 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.551 | 0.6199 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
J064 | chr4 | 74225394 | 74281424 | TRUE | OK | 44.0 | 0.0108 | 0.029 | 0.5477 | 0.544 | 0.272 | 49.3 | 29.2 | 40.3 | 52.6 | 39.2 | 53.2 |
J065 | chr4 | 74280443 | 74281424 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J066 | chr4 | 74281550 | 74288300 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.129 | 0.3921 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 0.0 | 1.0 | 2.9 |
J067 | chr4 | 74281550 | 74301696 | TRUE | OK | 29.6 | 0.013 | 0.08607 | 0.6847 | 0.504 | 0.252 | 26.6 | 33.4 | 21.2 | 43.7 | 24.5 | 28.0 |
J068 | chr4 | 74288465 | 74293488 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
N069 | chr4 | 74114657 | 74143392 | TRUE | OK | 32.2 | 0.00652 | 0.6451 | 0.9028 | 0.117 | 0.059 | 26.6 | 34.4 | 40.3 | 33.8 | 24.5 | 33.8 |
N070 | chr4 | 74125517 | 74138302 | TRUE | OK | 13.4 | 0.0187 | 0.9496 | 0.9882 | 0.028 | 0.014 | 19.7 | 11.5 | 12.1 | 10.9 | 8.8 | 17.4 |
N071 | chr4 | 74225394 | 74241418 | TRUE | OK | 32.3 | 0.017 | 0.6213 | 0.8949 | 0.136 | 0.068 | 45.4 | 24.0 | 31.2 | 27.8 | 31.3 | 33.8 |
N072 | chr4 | 74281550 | 74293488 | TRUE | OK | 25.0 | 0.0214 | 0.478 | 0.8488 | 0.229 | 0.114 | 24.7 | 16.7 | 34.2 | 23.8 | 26.4 | 24.2 |
N073 | chr4 | 74293562 | 74301696 | TRUE | OK | 12.3 | 0.092 | 0.8711 | 0.9688 | 0.047 | 0.023 | 6.9 | 9.4 | 23.2 | 7.9 | 8.8 | 17.4 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000163738.18 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |