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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr4 | 184694084 | 184695001 | TRUE | OK | 712.7 | 0.00297 | 0.005368 | 0.3047 | -0.291 | -0.145 | 657.7 | 812.3 | 622.5 | 758.5 | 695.3 | 730.0 |
E002 | chr4 | 184695001 | 184695128 | TRUE | OK | 418.6 | 0.0101 | 0.05981 | 0.6478 | -0.362 | -0.181 | 372.7 | 552.6 | 339.4 | 412.0 | 408.4 | 426.4 |
E003 | chr4 | 184695128 | 184695348 | TRUE | OK | 1061.8 | 0.00668 | 0.5199 | 0.8623 | -0.105 | -0.052 | 911.1 | 1184.5 | 838.0 | 1118.9 | 1125.2 | 1193.1 |
E004 | chr4 | 184695348 | 184695401 | TRUE | OK | 844.1 | 0.00193 | 0.1599 | 0.7389 | 0.119 | 0.059 | 746.4 | 794.6 | 634.6 | 956.1 | 937.2 | 995.8 |
E005 | chr4 | 184697646 | 184697803 | TRUE | OK | 1309.5 | 0.00236 | 0.234 | 0.7706 | 0.104 | 0.052 | 1176.3 | 1231.5 | 996.1 | 1470.3 | 1456.2 | 1526.6 |
E006 | chr4 | 184697803 | 184698096 | TRUE | OK | 86.9 | 0.0148 | 0.06042 | 0.6489 | 0.476 | 0.238 | 69.0 | 64.6 | 58.4 | 77.4 | 122.4 | 129.6 |
E007 | chr4 | 184698193 | 184698318 | TRUE | OK | 45.3 | 0.0262 | 0.05403 | 0.635 | 0.662 | 0.331 | 35.5 | 31.3 | 25.2 | 36.7 | 71.5 | 71.5 |
E008 | chr4 | 184700819 | 184700881 | TRUE | OK | 869.3 | 0.00231 | 0.4484 | 0.839 | 0.069 | 0.034 | 800.6 | 802.9 | 673.8 | 956.1 | 955.8 | 1026.8 |
E009 | chr4 | 184702088 | 184702136 | TRUE | OK | 877.8 | 0.00167 | 0.9082 | 0.9782 | 0.012 | 0.006 | 798.7 | 802.9 | 740.3 | 967.0 | 929.3 | 1028.7 |
E010 | chr4 | 184702136 | 184702362 | TRUE | OK | 12.8 | 0.0153 | 0.2998 | 0.7915 | -0.396 | -0.198 | 11.8 | 13.6 | 14.1 | 8.9 | 17.6 | 10.6 |
E011 | chr4 | 184702362 | 184702441 | TRUE | OK | 905.8 | 0.00109 | 0.9862 | 0.9966 | 0.000 | 0.000 | 816.4 | 845.6 | 763.5 | 1000.7 | 968.5 | 1040.3 |
E012 | chr4 | 184702441 | 184702481 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.118 | 0.8672 | NA | NA | NA | 2.0 | 1.0 | 1.0 | 4.0 | 0.0 | 1.9 |
E013 | chr4 | 184710071 | 184710180 | TRUE | OK | 897.4 | 0.00122 | 0.1171 | 0.7135 | 0.116 | 0.058 | 785.8 | 789.3 | 740.3 | 1019.6 | 1014.5 | 1034.5 |
E014 | chr4 | 184710325 | 184710406 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.426 | 0.1197 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 3.9 | 1.0 |
E015 | chr4 | 184712943 | 184713013 | TRUE | OK | 836.3 | 0.00184 | 0.007139 | 0.3426 | 0.230 | 0.115 | 712.9 | 690.3 | 672.8 | 983.9 | 974.4 | 983.3 |
E016 | chr4 | 184713868 | 184713941 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.7047 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
E017 | chr4 | 184716396 | 184716633 | TRUE | OK | 1395.7 | 0.00312 | 0.02971 | 0.551 | 0.222 | 0.111 | 1199.0 | 1149.1 | 1161.3 | 1625.2 | 1592.3 | 1647.5 |
E018 | chr4 | 184717135 | 184717196 | TRUE | OK | 853.6 | 0.00316 | 0.5427 | 0.8696 | 0.067 | 0.033 | 778.0 | 730.9 | 728.2 | 939.2 | 923.5 | 1021.9 |
E019 | chr4 | 184724956 | 184725062 | TRUE | OK | 852.1 | 0.00554 | 0.9077 | 0.9781 | -0.010 | -0.005 | 797.7 | 723.6 | 767.5 | 933.2 | 873.5 | 1017.1 |
E020 | chr4 | 184728917 | 184729035 | TRUE | OK | 740.4 | 0.00745 | 0.9728 | 0.9935 | -0.002 | -0.001 | 708.0 | 601.6 | 673.8 | 826.0 | 759.9 | 873.1 |
E021 | chr4 | 184730919 | 184730968 | TRUE | OK | 323.3 | 0.00723 | 0.6291 | 0.8974 | 0.079 | 0.039 | 290.9 | 249.2 | 301.2 | 371.3 | 337.9 | 389.6 |
E022 | chr4 | 184733297 | 184733414 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.1 | 0.0413 | 0.2961 | NA | NA | NA | 8.9 | 4.2 | 6.0 | 16.9 | 11.8 | 6.8 |
E023 | chr4 | 184734015 | 184734096 | TRUE | OK | 208.5 | 0.0139 | 0.8829 | 0.9718 | 0.027 | 0.013 | 199.2 | 146.0 | 207.5 | 246.2 | 213.5 | 238.8 |
E024 | chr4 | 184734096 | 184734130 | TRUE | OK | 34.1 | 0.00614 | 0.3009 | 0.7917 | -0.246 | -0.123 | 35.5 | 30.2 | 34.2 | 38.7 | 34.3 | 31.9 |
J025 | chr4 | 184695401 | 184697646 | TRUE | OK | 702.2 | 0.00154 | 0.03009 | 0.552 | 0.176 | 0.088 | 614.3 | 638.1 | 519.7 | 825.0 | 780.5 | 835.3 |
J026 | chr4 | 184697803 | 184700819 | TRUE | OK | 645.3 | 0.00351 | 0.7189 | 0.9258 | 0.036 | 0.018 | 605.4 | 624.6 | 477.4 | 712.8 | 688.4 | 762.8 |
J027 | chr4 | 184697803 | 184702088 | TRUE | OK | 51.6 | 0.0135 | 0.6128 | 0.8921 | 0.132 | 0.066 | 54.2 | 39.6 | 37.3 | 73.5 | 51.9 | 53.2 |
J028 | chr4 | 184698318 | 184702088 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.106 | 0.1343 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 3.9 |
J029 | chr4 | 184700881 | 184702088 | TRUE | OK | 616.5 | 0.00203 | 0.7264 | 0.9282 | -0.031 | -0.015 | 586.7 | 582.9 | 498.6 | 672.1 | 638.5 | 720.3 |
J030 | chr4 | 184702136 | 184702362 | TRUE | OK | 711.1 | 0.00137 | 0.9709 | 0.9931 | 0.006 | 0.003 | 644.8 | 645.4 | 610.4 | 787.3 | 746.2 | 832.4 |
J031 | chr4 | 184702441 | 184710071 | TRUE | OK | 569.5 | 0.000726 | 0.935 | 0.9846 | 0.007 | 0.003 | 481.2 | 543.3 | 497.6 | 615.5 | 627.7 | 651.6 |
J032 | chr4 | 184710180 | 184710325 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J033 | chr4 | 184710180 | 184712943 | TRUE | OK | 576.2 | 0.00204 | 0.02294 | 0.5123 | 0.210 | 0.105 | 511.7 | 474.4 | 447.2 | 687.0 | 663.0 | 673.9 |
J034 | chr4 | 184710406 | 184712943 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.6729 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
J035 | chr4 | 184713013 | 184713868 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J036 | chr4 | 184713013 | 184716396 | TRUE | OK | 556.6 | 0.00188 | 0.004611 | 0.285 | 0.258 | 0.129 | 479.2 | 446.3 | 435.1 | 652.3 | 637.5 | 689.4 |
J037 | chr4 | 184716633 | 184717135 | TRUE | OK | 640.7 | 0.00275 | 0.07258 | 0.6667 | 0.185 | 0.092 | 561.0 | 523.4 | 525.8 | 707.9 | 729.6 | 796.7 |
J038 | chr4 | 184717196 | 184724956 | TRUE | OK | 643.4 | 0.00466 | 0.8719 | 0.9689 | -0.015 | -0.007 | 611.3 | 556.8 | 563.0 | 693.0 | 653.2 | 783.1 |
J039 | chr4 | 184725062 | 184728917 | TRUE | OK | 569.9 | 0.006 | 0.7928 | 0.9479 | -0.032 | -0.016 | 554.1 | 480.7 | 507.6 | 627.4 | 568.0 | 681.6 |
J040 | chr4 | 184729035 | 184730919 | TRUE | OK | 312.1 | 0.00803 | 0.6977 | 0.9191 | 0.066 | 0.033 | 285.9 | 236.7 | 293.1 | 358.4 | 325.1 | 373.2 |
J041 | chr4 | 184730968 | 184733297 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0679 | 0.5598 | NA | NA | NA | 6.9 | 4.2 | 2.0 | 11.9 | 5.9 | 3.9 |
J042 | chr4 | 184730968 | 184734015 | TRUE | OK | 207.7 | 0.0135 | 0.8683 | 0.968 | 0.031 | 0.015 | 198.2 | 146.0 | 205.5 | 245.2 | 213.5 | 237.8 |
N043 | chr4 | 184691712 | 184694521 | TRUE | OK | 163.1 | 0.002 | 3.375e-07 | 0.000339 | -0.612 | -0.306 | 176.5 | 206.5 | 154.1 | 138.0 | 143.0 | 160.5 |
N044 | chr4 | 184697803 | 184699536 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.6 | 0.0179 | 0.4352 | NA | NA | NA | 6.9 | 5.2 | 10.1 | 15.9 | 10.8 | 8.7 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000151725.12 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |