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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr5 | 151771044 | 151771083 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.3 | 0.0579 | 0.8504 | NA | NA | NA | 2.0 | 7.3 | 5.0 | 4.0 | 2.0 | 5.8 |
E002 | chr5 | 151771083 | 151771212 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.0 | 0.0265 | 0.347 | NA | NA | NA | 6.9 | 6.3 | 4.0 | 5.0 | 4.9 | 8.7 |
E003 | chr5 | 151771212 | 151771243 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.4 | 0.0402 | 0.4612 | NA | NA | NA | 5.9 | 2.1 | 5.0 | 2.0 | 5.9 | 5.8 |
E004 | chr5 | 151771909 | 151771923 | TRUE | OK | 19.4 | 0.0109 | 0.4396 | 0.8361 | 0.238 | 0.119 | 18.7 | 14.6 | 28.2 | 18.9 | 17.6 | 18.4 |
E005 | chr5 | 151771923 | 151771951 | TRUE | OK | 91.3 | 0.00904 | 0.1262 | 0.7209 | 0.299 | 0.149 | 80.9 | 82.4 | 120.9 | 100.3 | 81.3 | 82.2 |
E006 | chr5 | 151771951 | 151771953 | TRUE | OK | 94.1 | 0.00889 | 0.1141 | 0.7118 | 0.306 | 0.153 | 82.8 | 85.5 | 123.9 | 103.3 | 84.2 | 85.1 |
E007 | chr5 | 151771953 | 151772036 | TRUE | OK | 1688.1 | 0.00486 | 0.6601 | 0.9075 | 0.047 | 0.023 | 2036.1 | 1557.8 | 2102.1 | 1604.3 | 1293.6 | 1534.4 |
E008 | chr5 | 151772278 | 151772503 | TRUE | OK | 163.2 | 0.0093 | 0.02777 | 0.5413 | 0.399 | 0.200 | 189.3 | 122.0 | 179.3 | 187.6 | 165.5 | 135.4 |
E009 | chr5 | 151772503 | 151772668 | TRUE | OK | 182.7 | 0.00255 | 3.958e-05 | 0.01571 | 0.493 | 0.246 | 190.3 | 144.9 | 196.4 | 195.6 | 179.2 | 189.5 |
E010 | chr5 | 151786571 | 151786602 | TRUE | OK | 1650.5 | 0.00381 | 0.3475 | 0.8066 | 0.092 | 0.046 | 1963.1 | 1507.8 | 2025.5 | 1544.8 | 1350.4 | 1511.2 |
E011 | chr5 | 151786602 | 151786620 | TRUE | OK | 2284.5 | 0.00424 | 0.4186 | 0.8297 | 0.083 | 0.041 | 2730.3 | 2099.0 | 2803.1 | 2155.3 | 1819.5 | 2100.0 |
E012 | chr5 | 151786620 | 151786715 | TRUE | OK | 3593.1 | 0.00593 | 0.6916 | 0.9173 | 0.038 | 0.019 | 4557.3 | 3214.7 | 4391.5 | 3354.6 | 2869.3 | 3171.2 |
E013 | chr5 | 151786715 | 151787386 | TRUE | OK | 12.7 | 0.0391 | 0.08415 | 0.6823 | 0.777 | 0.388 | 16.8 | 12.5 | 4.0 | 15.9 | 12.7 | 14.5 |
E014 | chr5 | 151787764 | 151787794 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0536 | 0.2633 | NA | NA | NA | 3.0 | 2.1 | 1.0 | 4.0 | 2.0 | 2.9 |
E015 | chr5 | 151790322 | 151790404 | TRUE | OK | 3842.8 | 0.0061 | 0.6947 | 0.9183 | 0.038 | 0.019 | 4912.3 | 3442.0 | 4655.4 | 3579.0 | 3057.3 | 3411.0 |
E016 | chr5 | 151790888 | 151790907 | TRUE | OK | 3239.3 | 0.00712 | 0.6654 | 0.909 | 0.044 | 0.022 | 4268.4 | 2842.5 | 3834.5 | 3052.8 | 2610.8 | 2827.0 |
E017 | chr5 | 151790907 | 151791026 | TRUE | OK | 3759.2 | 0.00557 | 0.8631 | 0.9667 | 0.010 | 0.005 | 4936.0 | 3452.4 | 4432.8 | 3541.3 | 2964.3 | 3228.3 |
E018 | chr5 | 151791026 | 151791029 | TRUE | OK | 1940.6 | 0.00358 | 0.7538 | 0.9364 | -0.036 | -0.018 | 2519.3 | 1910.3 | 2272.3 | 1814.8 | 1451.3 | 1675.5 |
E019 | chr5 | 151791029 | 151791062 | TRUE | OK | 2351.1 | 0.00221 | 0.8394 | 0.9605 | -0.018 | -0.009 | 2957.0 | 2358.6 | 2764.8 | 2189.1 | 1800.9 | 2036.2 |
E020 | chr5 | 151791062 | 151791063 | TRUE | OK | 19.9 | 0.00962 | 0.8229 | 0.956 | -0.074 | -0.037 | 26.6 | 16.7 | 26.2 | 20.8 | 15.7 | 13.5 |
E021 | chr5 | 151791063 | 151791750 | TRUE | OK | 20.1 | 0.0081 | 0.8817 | 0.9715 | -0.048 | -0.024 | 22.7 | 21.9 | 25.2 | 15.9 | 18.6 | 16.4 |
E022 | chr5 | 151792044 | 151792201 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.7 | 0.0494 | 0.652 | NA | NA | NA | 2.0 | 2.1 | 4.0 | 3.0 | 2.9 | 1.9 |
E023 | chr5 | 151794158 | 151794222 | TRUE | OK | 2543.5 | 0.00115 | 0.8367 | 0.9597 | 0.011 | 0.006 | 3059.6 | 2607.8 | 3002.5 | 2309.2 | 2019.3 | 2262.4 |
E024 | chr5 | 151794222 | 151794249 | TRUE | OK | 2344.0 | 0.000767 | 0.1587 | 0.7383 | 0.074 | 0.037 | 2684.9 | 2438.9 | 2727.6 | 2158.3 | 1942.9 | 2111.6 |
E025 | chr5 | 151795478 | 151795575 | TRUE | OK | 3555.1 | 0.000566 | 0.0254 | 0.5277 | 0.098 | 0.049 | 4084.0 | 3605.7 | 4146.7 | 3320.9 | 3042.6 | 3130.6 |
E026 | chr5 | 151797226 | 151797369 | TRUE | OK | 4285.8 | 0.000787 | 0.004142 | 0.2718 | 0.142 | 0.071 | 4901.4 | 4258.5 | 4951.5 | 4018.8 | 3776.1 | 3808.4 |
E027 | chr5 | 151797369 | 151797428 | TRUE | OK | 3061.2 | 0.00145 | 0.006939 | 0.3383 | 0.177 | 0.088 | 3587.1 | 2946.7 | 3429.6 | 2870.2 | 2782.1 | 2751.6 |
E028 | chr5 | 151799211 | 151799313 | TRUE | OK | 3062.5 | 0.00099 | 0.001264 | 0.1506 | 0.181 | 0.090 | 3597.9 | 3018.7 | 3340.0 | 2897.0 | 2722.4 | 2799.0 |
E029 | chr5 | 151799888 | 151800000 | TRUE | OK | 3410.6 | 0.000928 | 0.001876 | 0.184 | 0.168 | 0.084 | 4027.8 | 3343.0 | 3763.0 | 3288.1 | 3015.2 | 3026.2 |
E030 | chr5 | 151800217 | 151800346 | TRUE | OK | 3203.2 | 0.00161 | 0.03574 | 0.5775 | 0.146 | 0.073 | 3852.3 | 3237.6 | 3429.6 | 3065.7 | 2684.2 | 2949.8 |
E031 | chr5 | 151800759 | 151800869 | TRUE | OK | 3207.6 | 0.00226 | 0.8826 | 0.9717 | -0.008 | -0.004 | 3777.4 | 3638.0 | 3578.7 | 2960.5 | 2486.4 | 2804.8 |
E032 | chr5 | 151803884 | 151804225 | TRUE | OK | 6048.4 | 0.00382 | 0.624 | 0.8959 | -0.047 | -0.024 | 6910.9 | 7146.8 | 6865.2 | 5392.8 | 4704.5 | 5270.2 |
E033 | chr5 | 151804225 | 151805349 | TRUE | OK | 8394.9 | 0.00958 | 0.4559 | 0.8414 | -0.119 | -0.059 | 9571.2 | 10771.3 | 9123.4 | 7472.7 | 6486.7 | 6943.8 |
E034 | chr5 | 151805349 | 151812785 | TRUE | OK | 8664.2 | 0.00683 | 0.9847 | 0.9962 | -0.012 | -0.006 | 11059.1 | 7941.4 | 10709.8 | 7886.7 | 7190.9 | 7197.1 |
J035 | chr5 | 151771212 | 151786571 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.26 | 0.1766 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 |
J036 | chr5 | 151771243 | 151786602 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.514 | 0.6474 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 0.0 | 3.9 | 0.0 |
J037 | chr5 | 151772036 | 151786571 | TRUE | OK | 1187.7 | 0.00364 | 0.4932 | 0.8536 | 0.063 | 0.031 | 1446.5 | 1079.2 | 1461.5 | 1107.0 | 967.5 | 1064.5 |
J038 | chr5 | 151772036 | 151786602 | TRUE | OK | 394.4 | 0.0105 | 0.7854 | 0.9459 | -0.037 | -0.019 | 449.6 | 394.1 | 519.7 | 381.2 | 248.7 | 373.2 |
J039 | chr5 | 151772668 | 151786571 | TRUE | OK | 78.2 | 0.0115 | 0.03111 | 0.5571 | 0.496 | 0.248 | 76.9 | 69.9 | 80.6 | 82.4 | 57.8 | 101.5 |
J040 | chr5 | 151772668 | 151786602 | TRUE | OK | 32.3 | 0.00677 | 0.1518 | 0.7354 | 0.347 | 0.174 | 38.5 | 20.9 | 39.3 | 33.8 | 27.4 | 33.8 |
J041 | chr5 | 151786715 | 151787764 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.131 | 0.08035 | NA | NA | NA | 1.0 | 2.1 | 1.0 | 0.0 | 0.0 | 0.0 |
J042 | chr5 | 151786715 | 151790322 | TRUE | OK | 2646.9 | 0.00688 | 0.8414 | 0.961 | 0.012 | 0.006 | 3442.2 | 2340.9 | 3238.2 | 2419.4 | 2069.2 | 2371.7 |
J043 | chr5 | 151786715 | 151790888 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.1 | 0.0555 | 0.7057 | NA | NA | NA | 6.9 | 6.3 | 3.0 | 3.0 | 2.9 | 8.7 |
J044 | chr5 | 151787794 | 151790322 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.127 | 0.8185 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 |
J045 | chr5 | 151790404 | 151790888 | TRUE | OK | 2892.1 | 0.00748 | 0.5721 | 0.8789 | 0.064 | 0.032 | 3814.9 | 2501.5 | 3401.4 | 2732.2 | 2336.6 | 2566.0 |
J046 | chr5 | 151791062 | 151792044 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.104 | 0.1249 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 2.0 | 1.0 |
J047 | chr5 | 151791062 | 151794158 | TRUE | OK | 1767.9 | 0.00175 | 0.6156 | 0.8931 | -0.038 | -0.019 | 2186.0 | 1803.9 | 2120.2 | 1621.2 | 1327.9 | 1547.9 |
J048 | chr5 | 151791062 | 151795478 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.227 | 0.03527 | NA | NA | NA | 3.0 | 0.0 | 0.0 | 3.0 | 7.8 | 1.9 |
J049 | chr5 | 151792201 | 151795478 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J050 | chr5 | 151794249 | 151795478 | TRUE | OK | 2232.2 | 0.000479 | 0.02701 | 0.5376 | 0.098 | 0.049 | 2532.1 | 2306.5 | 2585.5 | 2061.0 | 1891.0 | 2016.8 |
J051 | chr5 | 151795575 | 151797226 | TRUE | OK | 2608.3 | 0.0007 | 0.003367 | 0.2462 | 0.145 | 0.072 | 2912.7 | 2617.2 | 3031.7 | 2430.3 | 2309.1 | 2348.4 |
J052 | chr5 | 151797428 | 151799211 | TRUE | OK | 2063.0 | 0.000867 | 0.01197 | 0.4154 | 0.137 | 0.069 | 2453.2 | 2040.6 | 2287.4 | 1941.9 | 1849.9 | 1805.1 |
J053 | chr5 | 151799313 | 151799888 | TRUE | OK | 2122.6 | 0.00118 | 0.00028 | 0.06219 | 0.224 | 0.112 | 2461.1 | 1993.7 | 2344.8 | 2024.3 | 1917.4 | 1994.6 |
J054 | chr5 | 151800000 | 151800217 | TRUE | OK | 2129.2 | 0.00107 | 0.000341 | 0.06993 | 0.215 | 0.107 | 2504.5 | 2095.9 | 2240.1 | 2085.9 | 1847.9 | 2001.4 |
J055 | chr5 | 151800346 | 151800759 | TRUE | OK | 1757.2 | 0.00146 | 0.7469 | 0.9345 | 0.023 | 0.012 | 2173.2 | 1859.2 | 1936.9 | 1656.0 | 1377.8 | 1540.2 |
J056 | chr5 | 151800869 | 151803884 | TRUE | OK | 2164.6 | 0.00352 | 0.8008 | 0.9501 | -0.021 | -0.011 | 2506.4 | 2547.4 | 2393.2 | 1959.8 | 1645.2 | 1935.6 |
N057 | chr5 | 151770772 | 151771313 | TRUE | OK | 27.2 | 0.0136 | 0.01026 | 0.3949 | 0.766 | 0.383 | 30.6 | 20.9 | 20.1 | 28.8 | 23.5 | 39.6 |
N058 | chr5 | 151772032 | 151786571 | TRUE | OK | 72.8 | 0.0142 | 0.7579 | 0.9377 | 0.055 | 0.027 | 99.6 | 53.2 | 91.7 | 73.5 | 51.9 | 66.7 |
N059 | chr5 | 151772032 | 151786602 | TRUE | OK | 25.2 | 0.0206 | 0.5354 | 0.8672 | 0.210 | 0.105 | 35.5 | 25.0 | 20.1 | 27.8 | 14.7 | 28.0 |
N060 | chr5 | 151803996 | 151804405 | TRUE | OK | 28.4 | 0.0135 | 0.4131 | 0.8281 | 0.241 | 0.120 | 29.6 | 37.5 | 23.2 | 24.8 | 23.5 | 31.9 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000145907.15 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |