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Raw Counts Table (ENSG00000129422.14)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Raw Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr8	17643794	17643798	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.639	0.8486	NA	NA	NA	0.0	2.0	0.0	2.0	0.0	0.0
E002	chr8	17643798	17643803	FALSE	LOW_COUNTS_INDEP_FILTER	1.7	0.296	0.2808	NA	NA	NA	2.0	5.0	0.0	2.0	0.0	1.0
E003	chr8	17643803	17645661	TRUE	OK	763.4	0.00999	0.05597	0.6401	-0.323	-0.161	770.0	696.0	679.0	787.0	845.0	830.0
E004	chr8	17645661	17645868	TRUE	OK	153.7	0.00263	0.1965	0.7564	-0.174	-0.087	164.0	113.0	154.0	160.0	159.0	179.0
E005	chr8	17645868	17645925	TRUE	OK	98.7	0.00561	0.3318	0.8013	-0.178	-0.089	116.0	69.0	93.0	99.0	98.0	122.0
E006	chr8	17645925	17645975	TRUE	OK	113.7	0.0113	0.4995	0.8555	-0.149	-0.074	129.0	76.0	112.0	115.0	104.0	152.0
E007	chr8	17645975	17646139	TRUE	OK	169.2	0.0109	0.2752	0.7833	-0.216	-0.108	180.0	122.0	179.0	163.0	156.0	223.0
E008	chr8	17646981	17647003	TRUE	OK	113.3	0.0108	0.4247	0.8313	-0.172	-0.086	110.0	79.0	129.0	115.0	106.0	146.0
E009	chr8	17647003	17647079	TRUE	OK	139.0	0.00862	0.3074	0.7937	-0.191	-0.095	134.0	105.0	153.0	142.0	129.0	177.0
E010	chr8	17647079	17647278	FALSE	LOW_COUNTS_INDEP_FILTER	4.6	0.0388	0.5798	NA	NA	NA	7.0	2.0	5.0	6.0	6.0	2.0
E011	chr8	17649845	17649879	TRUE	OK	105.2	0.00553	0.7063	0.9217	-0.070	-0.035	100.0	72.0	113.0	115.0	106.0	130.0
E012	chr8	17649879	17649962	TRUE	OK	108.8	0.00526	0.9052	0.9774	0.022	0.011	96.0	83.0	106.0	114.0	114.0	145.0
E013	chr8	17651602	17651764	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0976	0.581	NA	NA	NA	1.0	2.0	0.0	2.0	1.0	3.0
E014	chr8	17653185	17653281	TRUE	OK	107.3	0.00381	0.3136	0.7954	0.160	0.080	93.0	81.0	93.0	128.0	112.0	142.0
E015	chr8	17653424	17653498	TRUE	OK	99.7	0.0107	0.9211	0.9816	0.029	0.014	91.0	93.0	76.0	114.0	97.0	131.0
E016	chr8	17653498	17654560	TRUE	OK	15.7	0.0109	0.2482	0.775	-0.401	-0.201	18.0	12.0	18.0	16.0	12.0	19.0
E017	chr8	17654560	17654563	TRUE	OK	69.9	0.0126	0.9634	0.9915	-0.011	-0.005	72.0	66.0	47.0	80.0	68.0	89.0
E018	chr8	17654563	17654666	TRUE	OK	115.1	0.012	0.9475	0.9876	0.002	0.001	134.0	90.0	80.0	142.0	114.0	136.0
E019	chr8	17654666	17655025	TRUE	OK	9.8	0.113	0.3761	0.8154	-0.514	-0.257	12.0	5.0	14.0	3.0	18.0	7.0
E020	chr8	17655862	17655870	TRUE	OK	91.1	0.0138	0.5892	0.8844	0.114	0.057	105.0	60.0	66.0	127.0	94.0	99.0
E021	chr8	17655870	17656018	TRUE	OK	163.7	0.00906	0.7558	0.9371	0.047	0.024	177.0	103.0	146.0	216.0	173.0	175.0
E022	chr8	17656018	17656025	TRUE	OK	99.2	0.00636	0.7479	0.9347	-0.069	-0.035	108.0	62.0	99.0	122.0	105.0	104.0
E023	chr8	17656025	17656065	TRUE	OK	117.1	0.00536	0.5179	0.8617	-0.120	-0.060	131.0	75.0	117.0	136.0	127.0	122.0
E024	chr8	17663979	17664081	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.585	0.7076	NA	NA	NA	1.0	0.0	0.0	3.0	0.0	0.0
E025	chr8	17674667	17674734	TRUE	OK	12.2	0.0254	0.6633	0.9086	-0.209	-0.105	18.0	6.0	11.0	16.0	14.0	9.0
E026	chr8	17674734	17674836	TRUE	OK	16.1	0.0239	0.5064	0.858	0.272	0.136	16.0	13.0	9.0	26.0	20.0	13.0
E027	chr8	17674836	17675015	TRUE	OK	22.7	0.00866	0.7473	0.9345	-0.094	-0.047	23.0	22.0	17.0	28.0	25.0	22.0
E028	chr8	17675185	17675216	TRUE	OK	130.7	0.00455	0.03889	0.5895	-0.330	-0.165	141.0	94.0	151.0	135.0	132.0	136.0
E029	chr8	17675216	17675252	TRUE	OK	146.0	0.00544	0.1106	0.7087	-0.265	-0.132	160.0	102.0	160.0	157.0	139.0	164.0
E030	chr8	17675252	17675264	FALSE	LOW_COUNTS_INDEP_FILTER	3.2	0.0698	0.164	NA	NA	NA	3.0	2.0	7.0	2.0	4.0	1.0
E031	chr8	17675987	17676008	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.602	0.7148	NA	NA	NA	1.0	0.0	0.0	0.0	3.0	0.0
E032	chr8	17676008	17676142	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.393	0.9725	NA	NA	NA	1.0	1.0	0.0	0.0	3.0	0.0
E033	chr8	17676142	17676210	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.388	0.1941	NA	NA	NA	1.0	1.0	0.0	0.0	0.0	0.0
E034	chr8	17676275	17676414	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.147	0.1634	NA	NA	NA	0.0	1.0	1.0	1.0	2.0	6.0
E035	chr8	17676414	17676493	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.205	0.1322	NA	NA	NA	0.0	0.0	1.0	1.0	1.0	5.0
E036	chr8	17676493	17676494	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.146	0.2125	NA	NA	NA	0.0	0.0	1.0	1.0	1.0	3.0
E037	chr8	17684327	17684334	TRUE	OK	110.8	0.00465	0.2073	0.7603	-0.216	-0.108	127.0	73.0	116.0	114.0	116.0	124.0
E038	chr8	17684334	17684353	TRUE	OK	118.3	0.00497	0.1939	0.7558	-0.224	-0.112	135.0	78.0	125.0	129.0	121.0	127.0
E039	chr8	17684353	17684474	TRUE	OK	164.8	0.00397	0.4252	0.8314	-0.122	-0.061	167.0	112.0	175.0	181.0	176.0	185.0
E040	chr8	17684474	17684542	TRUE	OK	110.7	0.00427	0.501	0.8559	0.101	0.051	105.0	69.0	108.0	122.0	123.0	143.0
E041	chr8	17691304	17691364	TRUE	OK	22.1	0.00777	0.09714	0.6963	-0.483	-0.241	22.0	23.0	24.0	20.0	22.0	22.0
E042	chr8	17691968	17692141	TRUE	OK	14.7	0.0593	0.7292	0.9292	-0.266	-0.133	23.0	4.0	16.0	13.0	13.0	20.0
E043	chr8	17692141	17692217	TRUE	OK	55.5	0.0213	0.5496	0.8717	-0.214	-0.107	69.0	28.0	62.0	66.0	50.0	61.0
E044	chr8	17692217	17692226	TRUE	OK	16.6	0.0163	0.2523	0.776	-0.427	-0.214	20.0	9.0	22.0	20.0	16.0	13.0
E045	chr8	17693251	17693338	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.214	0.2735	NA	NA	NA	1.0	0.0	2.0	1.0	0.0	0.0
E046	chr8	17697256	17697670	TRUE	OK	10.9	0.024	0.1652	0.7419	-0.633	-0.317	12.0	6.0	18.0	11.0	8.0	11.0
E047	chr8	17708766	17708968	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.392	0.8709	NA	NA	NA	0.0	0.0	1.0	1.0	0.0	0.0
E048	chr8	17713213	17713252	TRUE	OK	14.0	0.0239	0.008157	0.3634	1.159	0.579	7.0	7.0	8.0	14.0	29.0	20.0
E049	chr8	17715766	17715901	TRUE	OK	21.1	0.00871	0.001565	0.1687	0.999	0.499	16.0	11.0	9.0	28.0	34.0	30.0
E050	chr8	17716472	17716590	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.853	0.5057	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
E051	chr8	17721711	17721989	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.415	0.8351	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	2.0
E052	chr8	17721989	17722221	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.501	0.8641	NA	NA	NA	2.0	0.0	0.0	0.0	0.0	2.0
E053	chr8	17722420	17722568	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E054	chr8	17722568	17722575	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E055	chr8	17722575	17722639	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.857	0.7087	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
E056	chr8	17723240	17723671	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.853	0.5057	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
E057	chr8	17723671	17723833	TRUE	OK	12.2	0.0199	0.003359	0.2459	1.281	0.640	11.0	3.0	4.0	22.0	15.0	19.0
E058	chr8	17723833	17724010	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.85	0.7076	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
E059	chr8	17724101	17724162	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.85	0.7076	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
E060	chr8	17734202	17734247	FALSE	LOW_COUNTS_INDEP_FILTER	1.1	0.123	0.4451	NA	NA	NA	2.0	0.0	0.0	1.0	2.0	2.0
E061	chr8	17743603	17743799	TRUE	OK	26.6	0.014	1.194e-05	0.00639	1.411	0.705	13.0	5.0	19.0	37.0	47.0	41.0
E062	chr8	17753716	17755011	TRUE	OK	100.0	0.0189	3.735e-11	1.171e-07	1.774	0.887	46.0	20.0	53.0	164.0	179.0	147.0
E063	chr8	17755011	17755437	TRUE	OK	34.4	0.0156	0.0001305	0.03709	1.144	0.572	27.0	8.0	20.0	58.0	50.0	46.0
E064	chr8	17755437	17755620	TRUE	OK	17.7	0.0238	0.001732	0.1773	1.234	0.617	16.0	3.0	8.0	31.0	25.0	25.0
E065	chr8	17755620	17755961	TRUE	OK	28.7	0.0358	0.02831	0.5447	0.845	0.422	28.0	9.0	16.0	54.0	33.0	34.0
E066	chr8	17755961	17755981	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.857	0.7087	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
E067	chr8	17758139	17758204	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.407	0.8553	NA	NA	NA	6.0	0.0	0.0	1.0	2.0	1.0
E068	chr8	17770428	17770581	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E069	chr8	17780876	17780962	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E070	chr8	17800597	17800668	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.865	0.7098	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
E071	chr8	17800668	17800917	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.865	0.7098	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J072	chr8	17646139	17646981	TRUE	OK	88.5	0.0102	0.3501	0.8075	-0.199	-0.100	90.0	63.0	98.0	88.0	79.0	117.0
J073	chr8	17647079	17649845	TRUE	OK	87.7	0.00631	0.2105	0.7615	-0.238	-0.119	90.0	62.0	100.0	85.0	85.0	108.0
J074	chr8	17649962	17651602	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J075	chr8	17649962	17653185	TRUE	OK	75.1	0.00589	0.4636	0.8439	0.140	0.070	59.0	54.0	75.0	85.0	79.0	102.0
J076	chr8	17653281	17653424	TRUE	OK	61.4	0.00917	0.5303	0.8654	0.148	0.074	52.0	54.0	47.0	73.0	59.0	86.0
J077	chr8	17653498	17654560	TRUE	OK	67.7	0.0159	0.9209	0.9815	0.023	0.012	69.0	65.0	43.0	79.0	66.0	87.0
J078	chr8	17654666	17655862	TRUE	OK	83.8	0.011	0.6982	0.9192	0.070	0.035	99.0	57.0	60.0	110.0	88.0	93.0
J079	chr8	17656065	17663979	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.266	0.8713	NA	NA	NA	1.0	0.0	0.0	1.0	0.0	0.0
J080	chr8	17656065	17675185	TRUE	OK	90.8	0.00347	0.176	0.7469	-0.226	-0.113	101.0	60.0	99.0	99.0	96.0	94.0
J081	chr8	17664081	17675185	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J082	chr8	17675015	17675185	TRUE	OK	14.6	0.00816	0.3734	0.8144	-0.305	-0.153	12.0	15.0	16.0	13.0	16.0	16.0
J083	chr8	17675252	17675987	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J084	chr8	17675252	17676008	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J085	chr8	17675252	17676275	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.565	0.6782	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J086	chr8	17675252	17684327	TRUE	OK	105.9	0.00535	0.1702	0.7443	-0.246	-0.123	122.0	69.0	114.0	111.0	104.0	120.0
J087	chr8	17684542	17691304	TRUE	OK	16.8	0.00814	0.2158	0.7634	-0.401	-0.200	17.0	19.0	15.0	17.0	13.0	20.0
J088	chr8	17684542	17691968	FALSE	LOW_COUNTS_INDEP_FILTER	6.1	0.0801	0.2227	NA	NA	NA	6.0	1.0	4.0	6.0	5.0	15.0
J089	chr8	17684542	17692141	TRUE	OK	33.3	0.0139	0.5947	0.8863	0.129	0.065	37.0	14.0	33.0	44.0	35.0	39.0
J090	chr8	17684542	17693251	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J091	chr8	17684542	17697256	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J092	chr8	17684542	17713213	TRUE	OK	12.5	0.0218	0.00615	0.3229	1.226	0.613	7.0	6.0	6.0	12.0	26.0	19.0
J093	chr8	17691364	17691968	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0699	0.3949	NA	NA	NA	2.0	0.0	5.0	2.0	1.0	2.0
J094	chr8	17708968	17713213	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J095	chr8	17713252	17715766	FALSE	LOW_COUNTS_INDEP_FILTER	9.4	0.027	0.08329	NA	NA	NA	5.0	6.0	6.0	7.0	15.0	18.0
J096	chr8	17715901	17716472	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J097	chr8	17715901	17721711	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J098	chr8	17715901	17722420	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J099	chr8	17715901	17722568	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J100	chr8	17715901	17723671	FALSE	LOW_COUNTS_INDEP_FILTER	7.1	0.0354	0.076	NA	NA	NA	7.0	2.0	3.0	15.0	7.0	9.0
J101	chr8	17715901	17743603	FALSE	LOW_COUNTS_INDEP_FILTER	4.6	0.0248	0.06141	NA	NA	NA	3.0	1.0	3.0	6.0	10.0	5.0
J102	chr8	17723833	17724101	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J103	chr8	17723833	17734202	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.158	0.1532	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	1.0
J104	chr8	17723833	17743603	FALSE	LOW_COUNTS_INDEP_FILTER	5.7	0.0188	0.01801	NA	NA	NA	5.0	2.0	1.0	8.0	8.0	11.0
J105	chr8	17724162	17743603	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J106	chr8	17743799	17753716	TRUE	OK	14.9	0.0146	8.846e-05	0.02852	1.568	0.784	4.0	3.0	12.0	23.0	26.0	23.0
J107	chr8	17755961	17758139	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.181	0.8595	NA	NA	NA	2.0	0.0	0.0	0.0	2.0	1.0
J108	chr8	17755961	17780876	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J109	chr8	17755961	17800597	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J110	chr8	17758204	17770428	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000129422.14
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE