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Normalized Counts Table (ENSG00000126456.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr19	49659568	49659569	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.401	0.2133	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	0.0
E002	chr19	49659569	49659571	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.401	0.2133	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	0.0
E003	chr19	49659571	49659572	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.297	0.8471	NA	NA	NA	2.0	0.0	0.0	1.0	1.0	0.0
E004	chr19	49659572	49659574	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.245	0.9412	NA	NA	NA	3.0	1.0	0.0	2.0	1.0	0.0
E005	chr19	49659574	49659578	TRUE	OK	21.7	0.0504	0.5124	0.86	-0.282	-0.141	26.6	37.5	14.1	12.9	10.8	28.0
E006	chr19	49659578	49659631	TRUE	OK	146.2	0.0103	0.942	0.9863	-0.036	-0.018	135.1	230.4	125.9	126.1	109.7	149.9
E007	chr19	49659631	49659757	TRUE	OK	624.5	0.0147	0.4706	0.8464	-0.216	-0.108	546.2	1087.6	563.0	499.4	504.3	546.3
E008	chr19	49659757	49659833	TRUE	OK	767.0	0.0135	0.506	0.8578	-0.194	-0.097	661.6	1308.6	709.1	614.5	631.6	676.8
E009	chr19	49660712	49660828	TRUE	OK	928.0	0.0109	0.4918	0.8532	-0.171	-0.085	827.3	1516.1	874.3	767.4	756.0	826.6
E010	chr19	49660828	49660844	TRUE	OK	109.0	0.00977	0.7565	0.9373	0.037	0.019	81.8	173.1	103.7	79.4	100.9	115.1
E011	chr19	49660844	49661003	TRUE	OK	31.8	0.0319	0.1258	0.7207	0.592	0.296	20.7	41.7	24.2	16.9	42.1	45.4
E012	chr19	49661449	49661524	TRUE	OK	99.2	0.0219	0.1735	0.7455	0.428	0.214	81.8	99.1	105.8	62.5	131.2	115.1
E013	chr19	49661524	49661594	TRUE	OK	103.0	0.0179	0.09494	0.6939	0.474	0.237	90.7	103.2	98.7	66.5	130.2	128.6
E014	chr19	49661594	49661625	TRUE	OK	78.2	0.0183	0.1157	0.7127	0.464	0.232	67.0	77.2	78.6	49.6	98.9	97.7
E015	chr19	49661625	49661947	TRUE	OK	180.5	0.0272	0.2708	0.7825	0.397	0.198	151.8	190.8	185.3	103.3	227.2	224.3
E016	chr19	49661947	49662068	TRUE	OK	1088.8	0.00363	0.3034	0.7925	-0.126	-0.063	1064.9	1593.3	1071.7	890.5	933.3	979.4
E017	chr19	49662068	49662132	TRUE	OK	1041.2	0.00262	0.00571	0.3131	-0.266	-0.133	1068.8	1524.5	1094.9	817.1	805.0	936.9
E018	chr19	49662132	49662174	TRUE	OK	1082.2	0.00255	0.01147	0.4103	-0.233	-0.116	1123.1	1528.6	1150.2	841.9	835.3	1014.2
E019	chr19	49662174	49662238	TRUE	OK	1177.7	0.00288	0.01202	0.4156	-0.245	-0.122	1214.8	1673.6	1255.0	934.2	902.9	1085.8
E020	chr19	49662238	49662300	TRUE	OK	1080.9	0.00409	0.01209	0.4159	-0.284	-0.142	1142.8	1538.0	1161.3	866.7	802.0	974.6
E021	chr19	49662300	49662328	TRUE	OK	1006.6	0.0047	0.05671	0.6414	-0.229	-0.114	1061.9	1421.2	1052.5	812.1	750.1	941.7
E022	chr19	49662328	49662329	TRUE	OK	46.5	0.0196	0.2697	0.7823	-0.302	-0.151	51.3	49.0	68.5	26.8	44.1	39.6
E023	chr19	49662374	49662424	TRUE	OK	34.0	0.0359	0.7786	0.944	0.080	0.040	24.7	30.2	55.4	24.8	33.3	35.8
E024	chr19	49662424	49662426	TRUE	OK	727.0	0.00328	0.2931	0.7896	-0.111	-0.056	736.5	1012.5	738.3	600.6	570.9	702.9
E025	chr19	49662426	49662453	TRUE	OK	844.1	0.00315	0.3641	0.8118	-0.094	-0.047	851.9	1168.9	853.1	706.9	676.7	807.3
E026	chr19	49662453	49662538	TRUE	OK	1062.2	0.00188	0.4819	0.8499	0.056	0.028	1024.5	1435.8	1020.3	883.6	966.5	1042.2
E027	chr19	49662538	49662584	TRUE	OK	922.9	0.00213	0.1321	0.7243	0.133	0.066	891.4	1202.3	868.2	780.3	880.4	914.6
E028	chr19	49662584	49662592	TRUE	OK	761.3	0.00159	0.02449	0.5221	0.182	0.091	702.0	996.8	709.1	640.3	739.4	780.2
E029	chr19	49662592	49662617	TRUE	OK	784.5	0.00167	0.03181	0.5602	0.177	0.089	734.6	1018.7	731.2	654.2	758.9	809.2
E030	chr19	49663187	49663235	TRUE	OK	962.1	0.00142	0.01733	0.4709	0.182	0.091	906.1	1212.7	929.7	852.8	897.0	974.6
E031	chr19	49663235	49663258	TRUE	OK	860.4	0.00314	0.09726	0.6964	0.176	0.088	831.2	1054.2	842.0	794.2	777.5	863.4
E032	chr19	49663258	49663342	TRUE	OK	69.3	0.00797	0.5969	0.8869	0.119	0.060	63.1	83.4	75.5	56.6	80.3	57.0
E033	chr19	49663342	49663372	TRUE	OK	741.7	0.00501	0.3777	0.816	0.120	0.060	760.2	897.8	727.2	679.1	659.1	727.1
E034	chr19	49663372	49663420	TRUE	OK	917.0	0.0047	0.2533	0.7765	0.147	0.074	920.9	1103.2	906.5	842.9	821.6	906.9
E035	chr19	49663420	49663514	TRUE	OK	1066.6	0.00686	0.5802	0.8813	0.087	0.044	1099.4	1296.1	1070.7	988.8	941.1	1003.6
E036	chr19	49663514	49663869	TRUE	OK	180.3	0.0134	0.3896	0.8201	0.213	0.106	146.9	213.8	200.4	116.2	203.7	201.1
E037	chr19	49664442	49664523	TRUE	OK	58.7	0.0482	0.2634	0.7801	0.503	0.252	45.4	42.8	76.5	40.7	51.9	94.7
E038	chr19	49664523	49664552	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.055	0.4014	NA	NA	NA	3.0	4.2	6.0	3.0	0.0	3.9
E039	chr19	49664552	49664586	TRUE	OK	131.4	0.0069	0.9433	0.9866	0.022	0.011	129.2	160.6	144.0	128.1	98.9	127.6
E040	chr19	49664586	49664673	TRUE	OK	206.6	0.0082	0.8236	0.9561	0.051	0.026	198.2	223.1	254.8	165.8	192.9	205.0
E041	chr19	49664673	49664723	TRUE	OK	700.3	0.00731	0.9616	0.9911	0.007	0.004	750.4	803.9	767.5	602.6	624.8	652.6
E042	chr19	49664723	49664838	TRUE	OK	873.2	0.00784	0.819	0.955	0.053	0.026	919.9	979.1	961.9	742.6	794.2	841.1
E043	chr19	49664838	49664846	TRUE	OK	590.0	0.00751	0.8029	0.9507	0.056	0.028	609.4	651.7	668.8	496.4	522.9	590.7
E044	chr19	49664846	49664950	TRUE	OK	330.9	0.0182	0.6728	0.9112	0.120	0.060	257.3	388.9	415.0	214.4	328.1	381.9
E045	chr19	49664950	49665169	TRUE	OK	253.0	0.0164	0.5752	0.8799	0.168	0.084	212.0	289.9	297.1	161.8	244.8	312.3
E046	chr19	49665169	49665231	TRUE	OK	64.5	0.0214	0.5298	0.8653	0.239	0.119	56.2	81.3	61.4	37.7	56.8	93.8
E047	chr19	49665231	49665458	TRUE	OK	137.1	0.0181	0.5375	0.868	0.206	0.103	117.3	173.1	137.0	84.4	122.4	188.5
E048	chr19	49665458	49665483	TRUE	OK	107.2	0.00919	0.2544	0.7772	0.257	0.129	101.6	123.0	103.7	77.4	96.9	140.2
E049	chr19	49665483	49665613	TRUE	OK	229.8	0.0128	0.4549	0.841	0.182	0.091	186.4	274.2	261.9	151.9	226.2	278.4
E050	chr19	49665613	49665630	TRUE	OK	164.8	0.0179	0.7487	0.9349	0.104	0.052	128.2	200.2	202.5	100.3	166.5	191.4
E051	chr19	49665630	49665634	TRUE	OK	490.5	0.00968	0.9161	0.9803	0.034	0.017	490.0	529.7	594.3	408.0	425.0	496.0
E052	chr19	49665634	49665671	TRUE	OK	643.4	0.0124	0.8278	0.9572	0.063	0.031	679.4	676.7	744.3	553.0	540.6	666.2
E053	chr19	49665671	49665705	TRUE	OK	656.7	0.0145	0.7698	0.9412	0.080	0.040	710.9	672.6	750.4	584.8	558.2	663.2
E054	chr19	49665705	49665731	TRUE	OK	585.9	0.0167	0.7717	0.9417	0.082	0.041	638.9	586.0	676.9	534.1	491.6	587.8
E055	chr19	49665731	49665754	TRUE	OK	418.6	0.0186	0.3524	0.8081	0.235	0.117	444.7	379.5	472.4	385.2	381.9	447.6
E056	chr19	49665754	49665755	TRUE	OK	343.0	0.022	0.3315	0.8013	0.261	0.130	371.7	296.1	384.8	323.6	315.3	366.4
E057	chr19	49665755	49665779	TRUE	OK	343.2	0.022	0.3298	0.8009	0.262	0.131	373.7	296.1	382.7	323.6	315.3	367.4
E058	chr19	49665779	49665780	TRUE	OK	177.1	0.0255	0.1517	0.7354	0.410	0.205	184.4	135.6	195.4	175.7	173.3	198.2
E059	chr19	49665780	49665784	TRUE	OK	176.8	0.0255	0.1577	0.738	0.405	0.202	184.4	135.6	195.4	175.7	172.4	197.2
E060	chr19	49665784	49665788	TRUE	OK	169.2	0.0256	0.1611	0.7396	0.404	0.202	173.5	129.3	190.4	165.8	162.6	193.4
E061	chr19	49665788	49665802	TRUE	OK	147.6	0.0265	0.196	0.7563	0.381	0.191	157.8	111.6	164.2	138.0	147.9	166.3
E062	chr19	49665802	49665835	TRUE	OK	91.3	0.0104	0.07332	0.668	0.392	0.196	90.7	81.3	94.7	89.4	93.0	98.6
E063	chr19	49665835	49665842	TRUE	OK	36.5	0.0286	0.4179	0.8295	0.295	0.147	33.5	32.3	44.3	40.7	42.1	26.1
E064	chr19	49665842	49665843	TRUE	OK	28.1	0.0288	0.3464	0.806	0.353	0.176	22.7	26.1	34.2	31.8	34.3	19.3
E065	chr19	49665843	49665847	TRUE	OK	26.8	0.0323	0.4675	0.8452	0.284	0.142	20.7	26.1	34.2	29.8	32.3	17.4
E066	chr19	49665847	49665857	TRUE	OK	12.4	0.0214	0.3744	0.8148	0.382	0.191	12.8	9.4	14.1	12.9	15.7	9.7
E067	chr19	49665857	49665859	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.0401	0.6505	NA	NA	NA	4.9	4.2	3.0	2.0	2.9	2.9
E068	chr19	49665859	49665875	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.0401	0.6505	NA	NA	NA	4.9	4.2	3.0	2.0	2.9	2.9
J069	chr19	49659833	49660712	TRUE	OK	610.7	0.0119	0.6795	0.9134	-0.134	-0.067	522.6	1020.8	560.0	497.4	511.2	552.1
J070	chr19	49659833	49661947	TRUE	OK	9.9	0.0137	0.03568	0.5772	-0.927	-0.463	8.9	18.8	14.1	5.0	2.9	9.7
J071	chr19	49659833	49662424	FALSE	LOW_COUNTS_INDEP_FILTER	6.9	0.0466	0.1151	NA	NA	NA	3.0	16.7	10.1	3.0	3.9	4.8
J072	chr19	49660828	49661449	TRUE	OK	10.1	0.0464	0.3501	0.8075	0.503	0.252	7.9	6.3	14.1	7.9	15.7	8.7
J073	chr19	49660828	49661947	TRUE	OK	410.8	0.00612	0.903	0.9768	-0.031	-0.016	402.3	594.4	380.7	374.3	338.8	374.2
J074	chr19	49660828	49662424	TRUE	OK	22.6	0.00537	0.9977	0.9993	0.009	0.004	22.7	26.1	26.2	19.9	19.6	21.3
J075	chr19	49660844	49661449	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.696	0.7832	NA	NA	NA	3.0	3.1	0.0	0.0	5.9	0.0
J076	chr19	49660844	49661947	TRUE	OK	55.5	0.0145	0.5413	0.8693	-0.199	-0.099	42.4	98.0	55.4	49.6	40.2	47.4
J077	chr19	49661625	49661947	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.232	0.5948	NA	NA	NA	2.0	0.0	0.0	0.0	1.0	1.9
J078	chr19	49662328	49662424	TRUE	OK	655.2	0.0041	0.3653	0.8121	-0.106	-0.053	672.5	916.6	650.7	547.0	507.3	637.1
J079	chr19	49662328	49662592	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.56	0.4916	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J080	chr19	49662617	49663187	TRUE	OK	690.4	0.000918	0.03595	0.5784	0.150	0.075	646.8	895.7	659.7	566.9	659.1	714.5
J081	chr19	49663258	49663342	TRUE	OK	641.2	0.00436	0.355	0.8091	0.119	0.059	650.8	783.1	627.5	591.7	561.1	633.3
J082	chr19	49663258	49664552	FALSE	LOW_COUNTS_INDEP_FILTER	1.7	0.0695	0.4164	NA	NA	NA	0.0	2.1	2.0	1.0	1.0	3.9
J083	chr19	49663258	49664673	FALSE	LOW_COUNTS_INDEP_FILTER	6.1	0.0182	0.352	NA	NA	NA	4.9	5.2	7.1	7.9	3.9	7.7
J084	chr19	49663258	49665630	TRUE	OK	43.4	0.0153	0.4023	0.8248	0.245	0.122	43.4	36.5	53.4	38.7	40.2	48.3
J085	chr19	49663514	49664442	TRUE	OK	15.9	0.0258	1.946e-06	0.001443	2.036	1.018	6.9	12.5	3.0	15.9	23.5	33.8
J086	chr19	49663514	49664552	TRUE	OK	90.2	0.0153	0.5282	0.8649	-0.136	-0.068	101.6	118.9	91.7	89.4	55.8	84.1
J087	chr19	49663514	49664586	TRUE	OK	11.0	0.0112	0.6312	0.8981	-0.176	-0.088	14.8	11.5	12.1	6.9	9.8	10.6
J088	chr19	49663514	49664673	TRUE	OK	454.3	0.00824	0.9486	0.988	-0.002	-0.001	496.9	559.9	453.3	424.9	374.1	416.7
J089	chr19	49663514	49665630	TRUE	OK	23.4	0.0179	0.9887	0.9973	-0.002	-0.001	20.7	22.9	34.2	21.8	22.5	18.4
J090	chr19	49664673	49665630	TRUE	OK	56.2	0.0218	0.7824	0.9451	-0.060	-0.030	64.1	57.3	68.5	58.6	38.2	50.3
J091	chr19	49664673	49665634	TRUE	OK	21.7	0.0219	0.7156	0.9247	0.154	0.077	27.6	25.0	16.1	15.9	16.6	29.0
J092	chr19	49664846	49665458	TRUE	OK	13.6	0.0134	0.1484	0.7341	0.548	0.274	12.8	13.6	11.1	18.9	9.8	15.5
J093	chr19	49664846	49665483	TRUE	OK	9.8	0.0112	0.03119	0.5575	0.912	0.456	5.9	9.4	8.1	10.9	8.8	15.5
J094	chr19	49664846	49665630	TRUE	OK	205.2	0.0129	0.8107	0.9528	-0.034	-0.017	236.6	221.1	230.7	187.6	163.5	191.4
J095	chr19	49664846	49665671	TRUE	OK	51.5	0.0202	0.9787	0.9949	0.024	0.012	60.1	54.2	55.4	53.6	49.0	36.7
J096	chr19	49664950	49665634	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0579	0.8081	NA	NA	NA	3.0	3.1	1.0	3.0	0.0	1.9
N097	chr19	49663258	49665634	TRUE	OK	13.0	0.0368	0.869	0.9682	0.116	0.058	12.8	13.6	15.1	14.9	4.9	16.4
N098	chr19	49663514	49665671	TRUE	OK	13.6	0.0578	0.758	0.9378	0.198	0.099	13.8	10.4	18.1	18.9	6.9	13.5
N099	chr19	49664673	49665671	TRUE	OK	12.6	0.0266	0.8942	0.9747	-0.039	-0.020	14.8	9.4	18.1	10.9	8.8	13.5
N100	chr19	49664846	49665634	TRUE	OK	73.8	0.0213	0.996	0.999	0.014	0.007	93.7	69.9	80.6	69.5	59.7	69.6

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000126456.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE