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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr1 | 108875349 | 108875382 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E002 | chr1 | 108876736 | 108876980 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0582 | 0.3037 | NA | NA | NA | 2.0 | 1.0 | 2.0 | 3.0 | 2.0 | 5.8 |
E003 | chr1 | 108876980 | 108876984 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0476 | 0.4927 | NA | NA | NA | 3.0 | 2.1 | 2.0 | 2.0 | 3.9 | 5.8 |
E004 | chr1 | 108876984 | 108877002 | TRUE | OK | 47.0 | 0.00435 | 0.0146 | 0.4444 | -0.502 | -0.251 | 56.2 | 43.8 | 55.4 | 46.7 | 40.2 | 39.6 |
E005 | chr1 | 108877002 | 108877228 | TRUE | OK | 629.3 | 0.0104 | 0.8561 | 0.9647 | -0.057 | -0.029 | 727.7 | 431.7 | 633.5 | 720.8 | 650.2 | 612.0 |
E006 | chr1 | 108877255 | 108877407 | TRUE | OK | 33.4 | 0.00686 | 2.491e-05 | 0.01118 | 1.081 | 0.540 | 25.6 | 14.6 | 18.1 | 52.6 | 40.2 | 49.3 |
E007 | chr1 | 108877407 | 108877574 | TRUE | OK | 80.0 | 0.00454 | 0.0003307 | 0.06848 | 0.624 | 0.312 | 67.0 | 39.6 | 66.5 | 102.3 | 100.9 | 103.5 |
E008 | chr1 | 108877574 | 108877774 | TRUE | OK | 107.9 | 0.0138 | 0.003726 | 0.2577 | 0.632 | 0.316 | 96.6 | 46.9 | 89.6 | 139.0 | 140.0 | 135.4 |
E009 | chr1 | 108882579 | 108882625 | TRUE | OK | 117.3 | 0.00903 | 0.3265 | 0.7998 | 0.170 | 0.085 | 132.1 | 74.0 | 100.7 | 128.1 | 142.0 | 126.7 |
E010 | chr1 | 108885274 | 108885506 | TRUE | OK | 972.2 | 0.0086 | 0.119 | 0.7151 | 0.226 | 0.113 | 1020.5 | 624.6 | 863.2 | 1180.4 | 1071.3 | 1073.2 |
E011 | chr1 | 108885506 | 108885578 | TRUE | OK | 652.2 | 0.00866 | 0.1384 | 0.7288 | 0.219 | 0.109 | 662.6 | 411.9 | 608.4 | 757.5 | 697.2 | 775.4 |
E012 | chr1 | 108896863 | 108896963 | TRUE | OK | 961.6 | 0.01 | 0.1367 | 0.7275 | 0.229 | 0.114 | 971.2 | 595.4 | 911.5 | 1125.8 | 1054.7 | 1110.9 |
E013 | chr1 | 108896963 | 108897032 | TRUE | OK | 886.6 | 0.012 | 0.2194 | 0.7646 | 0.197 | 0.099 | 933.8 | 538.0 | 838.0 | 1035.5 | 979.3 | 994.9 |
E014 | chr1 | 108897032 | 108897058 | TRUE | OK | 806.1 | 0.0128 | 0.221 | 0.765 | 0.202 | 0.101 | 842.1 | 480.7 | 772.5 | 936.2 | 904.9 | 900.1 |
E015 | chr1 | 108897058 | 108897085 | TRUE | OK | 786.3 | 0.00869 | 0.1648 | 0.7416 | 0.200 | 0.100 | 820.4 | 500.5 | 724.2 | 932.2 | 871.6 | 869.2 |
E016 | chr1 | 108897085 | 108897086 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.6 | 0.0352 | 0.6625 | NA | NA | NA | 9.9 | 4.2 | 15.1 | 10.9 | 10.8 | 6.8 |
E017 | chr1 | 108897491 | 108897535 | TRUE | OK | 891.8 | 0.00672 | 0.322 | 0.7986 | 0.124 | 0.062 | 929.8 | 607.9 | 847.1 | 1053.3 | 926.4 | 986.2 |
E018 | chr1 | 108897535 | 108897627 | TRUE | OK | 1002.8 | 0.00742 | 0.2838 | 0.7862 | 0.141 | 0.070 | 1051.1 | 674.6 | 941.8 | 1195.3 | 1049.8 | 1104.1 |
E019 | chr1 | 108897958 | 108898101 | TRUE | OK | 1236.8 | 0.00482 | 0.2971 | 0.7908 | 0.115 | 0.057 | 1307.4 | 902.0 | 1114.0 | 1452.5 | 1271.1 | 1373.9 |
E020 | chr1 | 108898641 | 108898724 | TRUE | OK | 1052.7 | 0.00499 | 0.2717 | 0.7828 | 0.125 | 0.063 | 1090.5 | 756.0 | 970.0 | 1215.2 | 1072.3 | 1212.4 |
E021 | chr1 | 108898724 | 108898765 | TRUE | OK | 812.9 | 0.00352 | 0.2741 | 0.7831 | 0.111 | 0.055 | 826.3 | 601.6 | 755.4 | 944.1 | 822.6 | 927.2 |
E022 | chr1 | 108898878 | 108898994 | TRUE | OK | 884.9 | 0.00155 | 0.9897 | 0.9975 | -0.004 | -0.002 | 894.3 | 716.3 | 864.2 | 974.9 | 891.1 | 968.8 |
E023 | chr1 | 108901789 | 108901903 | TRUE | OK | 944.6 | 0.00238 | 0.6666 | 0.9094 | 0.036 | 0.018 | 909.1 | 754.9 | 941.8 | 1042.4 | 955.8 | 1063.5 |
E024 | chr1 | 108901903 | 108901945 | TRUE | OK | 650.9 | 0.00216 | 0.9324 | 0.984 | 0.006 | 0.003 | 613.3 | 538.0 | 662.8 | 729.7 | 652.2 | 709.7 |
E025 | chr1 | 108903125 | 108903169 | TRUE | OK | 815.5 | 0.00172 | 0.9771 | 0.9944 | -0.005 | -0.003 | 806.6 | 661.1 | 813.8 | 908.4 | 817.7 | 885.6 |
E026 | chr1 | 108903169 | 108903234 | TRUE | OK | 869.7 | 0.00149 | 0.9997 | 0.9999 | -0.004 | -0.002 | 879.5 | 695.5 | 857.1 | 954.1 | 902.9 | 929.1 |
E027 | chr1 | 108904124 | 108904225 | TRUE | OK | 1105.3 | 0.00113 | 0.8301 | 0.9577 | 0.011 | 0.005 | 1126.0 | 895.7 | 1053.6 | 1221.1 | 1168.3 | 1167.0 |
E028 | chr1 | 108904225 | 108904254 | TRUE | OK | 875.1 | 0.00108 | 0.7895 | 0.9469 | -0.021 | -0.010 | 885.4 | 721.6 | 854.1 | 975.9 | 904.9 | 908.8 |
E029 | chr1 | 108909613 | 108909981 | TRUE | OK | 10.0 | 0.036 | 0.9516 | 0.9888 | 0.041 | 0.020 | 5.9 | 12.5 | 9.1 | 7.9 | 8.8 | 15.5 |
E030 | chr1 | 108914337 | 108914376 | TRUE | OK | 1013.6 | 0.00246 | 0.6221 | 0.8952 | -0.051 | -0.025 | 1060.9 | 806.0 | 1012.3 | 1142.7 | 1029.2 | 1030.6 |
E031 | chr1 | 108914376 | 108914408 | TRUE | OK | 968.3 | 0.00321 | 0.853 | 0.964 | -0.026 | -0.013 | 1023.5 | 751.8 | 952.8 | 1108.0 | 968.5 | 1005.5 |
E032 | chr1 | 108918612 | 108918789 | TRUE | OK | 1485.3 | 0.00131 | 0.9343 | 0.9845 | -0.009 | -0.005 | 1499.7 | 1206.4 | 1454.4 | 1646.0 | 1562.0 | 1543.1 |
E033 | chr1 | 108922416 | 108922576 | TRUE | OK | 1443.4 | 0.000666 | 0.7373 | 0.9318 | -0.018 | -0.009 | 1428.7 | 1280.5 | 1346.7 | 1573.6 | 1518.9 | 1512.1 |
E034 | chr1 | 108923999 | 108924214 | TRUE | OK | 1450.0 | 0.00121 | 0.2579 | 0.7783 | 0.075 | 0.038 | 1418.9 | 1261.7 | 1271.1 | 1609.3 | 1595.2 | 1544.0 |
E035 | chr1 | 108924214 | 108924361 | TRUE | OK | 77.7 | 0.00868 | 0.1869 | 0.7517 | -0.273 | -0.136 | 80.9 | 92.8 | 65.5 | 72.5 | 79.3 | 75.4 |
E036 | chr1 | 108926274 | 108926890 | TRUE | OK | 28.7 | 0.00606 | 0.3748 | 0.8149 | -0.228 | -0.114 | 32.5 | 27.1 | 27.2 | 31.8 | 27.4 | 26.1 |
E037 | chr1 | 108929700 | 108929975 | TRUE | OK | 1624.4 | 0.0066 | 0.9821 | 0.9957 | 0.004 | 0.002 | 1510.6 | 1638.1 | 1383.9 | 1789.0 | 1693.2 | 1731.6 |
E038 | chr1 | 108929975 | 108931312 | TRUE | OK | 2220.9 | 0.012 | 0.418 | 0.8295 | -0.149 | -0.074 | 2099.2 | 2438.9 | 1944.9 | 2338.0 | 2118.2 | 2386.2 |
E039 | chr1 | 108931312 | 108934335 | TRUE | OK | 2065.2 | 0.000683 | 0.1372 | 0.7278 | -0.079 | -0.039 | 2124.8 | 1792.4 | 1990.3 | 2215.9 | 2081.9 | 2186.0 |
E040 | chr1 | 108934335 | 108934545 | TRUE | OK | 155.2 | 0.00511 | 0.4223 | 0.8306 | 0.114 | 0.057 | 169.6 | 112.6 | 133.0 | 168.8 | 159.6 | 187.6 |
J041 | chr1 | 108875382 | 108876736 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.555 | 0.636 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
J042 | chr1 | 108877228 | 108882579 | TRUE | OK | 55.6 | 0.00448 | 0.6734 | 0.9114 | -0.089 | -0.045 | 67.0 | 40.7 | 52.4 | 54.6 | 63.7 | 55.1 |
J043 | chr1 | 108877228 | 108885274 | TRUE | OK | 333.5 | 0.00772 | 0.9211 | 0.9816 | 0.002 | 0.001 | 375.7 | 234.6 | 320.3 | 404.1 | 341.8 | 324.9 |
J044 | chr1 | 108877228 | 108885506 | TRUE | OK | 35.6 | 0.0126 | 0.3292 | 0.8008 | -0.284 | -0.142 | 42.4 | 21.9 | 45.3 | 32.8 | 32.3 | 38.7 |
J045 | chr1 | 108877574 | 108885274 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.0264 | 0.1551 | NA | NA | NA | 3.9 | 4.2 | 4.0 | 11.9 | 8.8 | 3.9 |
J046 | chr1 | 108877774 | 108885274 | TRUE | OK | 42.2 | 0.00373 | 0.0004743 | 0.08581 | 0.742 | 0.371 | 37.5 | 22.9 | 26.2 | 57.6 | 56.8 | 52.2 |
J047 | chr1 | 108882625 | 108885274 | TRUE | OK | 81.9 | 0.00706 | 0.3062 | 0.7933 | 0.181 | 0.090 | 89.7 | 48.0 | 75.5 | 96.3 | 87.2 | 94.7 |
J048 | chr1 | 108882625 | 108885506 | TRUE | OK | 9.8 | 0.012 | 0.8251 | 0.9565 | -0.097 | -0.049 | 11.8 | 6.3 | 10.1 | 11.9 | 11.8 | 6.8 |
J049 | chr1 | 108885578 | 108896863 | TRUE | OK | 521.9 | 0.00779 | 0.1131 | 0.7109 | 0.228 | 0.114 | 523.6 | 328.5 | 488.5 | 617.5 | 559.2 | 613.9 |
J050 | chr1 | 108897085 | 108897491 | TRUE | OK | 653.0 | 0.00917 | 0.139 | 0.7291 | 0.221 | 0.110 | 668.5 | 404.6 | 610.4 | 769.4 | 716.8 | 748.3 |
J051 | chr1 | 108897627 | 108897958 | TRUE | OK | 646.6 | 0.00418 | 0.4046 | 0.8254 | 0.091 | 0.045 | 679.4 | 476.5 | 592.2 | 780.3 | 643.4 | 707.7 |
J052 | chr1 | 108898101 | 108898641 | TRUE | OK | 759.8 | 0.00616 | 0.2035 | 0.759 | 0.162 | 0.081 | 806.6 | 531.8 | 664.8 | 896.5 | 769.7 | 889.5 |
J053 | chr1 | 108898765 | 108898878 | TRUE | OK | 576.7 | 0.00171 | 0.687 | 0.9158 | 0.031 | 0.016 | 571.9 | 458.8 | 562.0 | 618.5 | 590.5 | 658.4 |
J054 | chr1 | 108898994 | 108901789 | TRUE | OK | 612.0 | 0.00207 | 0.4806 | 0.8496 | 0.060 | 0.030 | 608.4 | 474.4 | 590.2 | 677.1 | 618.9 | 702.9 |
J055 | chr1 | 108898994 | 108903125 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.5 | 0.011 | 0.6433 | NA | NA | NA | 9.9 | 10.4 | 8.1 | 11.9 | 8.8 | 7.7 |
J056 | chr1 | 108901945 | 108903125 | TRUE | OK | 576.4 | 0.00177 | 0.851 | 0.9635 | -0.017 | -0.009 | 541.3 | 487.0 | 591.2 | 643.3 | 571.9 | 623.6 |
J057 | chr1 | 108903234 | 108904124 | TRUE | OK | 614.5 | 0.00143 | 0.9734 | 0.9935 | -0.008 | -0.004 | 649.8 | 493.2 | 577.1 | 661.2 | 630.7 | 674.9 |
J058 | chr1 | 108904254 | 108909613 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.0538 | 0.7356 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 3.0 | 2.0 | 1.0 |
J059 | chr1 | 108904254 | 108914337 | TRUE | OK | 772.9 | 0.000676 | 0.8944 | 0.9747 | 0.006 | 0.003 | 774.0 | 635.0 | 744.3 | 870.7 | 811.8 | 801.5 |
J060 | chr1 | 108914408 | 108918612 | TRUE | OK | 762.3 | 0.00364 | 0.8131 | 0.9534 | -0.034 | -0.017 | 808.5 | 580.8 | 764.5 | 877.6 | 766.8 | 775.4 |
J061 | chr1 | 108918789 | 108922416 | TRUE | OK | 770.4 | 0.000493 | 0.4866 | 0.8517 | -0.041 | -0.020 | 763.2 | 672.6 | 746.4 | 843.9 | 794.2 | 802.5 |
J062 | chr1 | 108922576 | 108923999 | TRUE | OK | 817.7 | 0.000919 | 0.1955 | 0.7561 | 0.084 | 0.042 | 799.7 | 699.7 | 718.1 | 888.5 | 914.6 | 885.6 |
J063 | chr1 | 108924214 | 108926274 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J064 | chr1 | 108924214 | 108929700 | TRUE | OK | 590.9 | 0.000805 | 0.049 | 0.6229 | 0.136 | 0.068 | 545.3 | 507.8 | 518.7 | 696.9 | 623.8 | 652.6 |
J065 | chr1 | 108929975 | 108931312 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.169 | 0.5059 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
N066 | chr1 | 108877228 | 108877530 | TRUE | OK | 11.6 | 0.0219 | 0.1842 | 0.7505 | -0.575 | -0.287 | 17.7 | 8.3 | 13.1 | 6.9 | 14.7 | 8.7 |
N067 | chr1 | 108877228 | 108896863 | TRUE | OK | 34.8 | 0.0336 | 0.4919 | 0.8532 | 0.191 | 0.095 | 47.3 | 15.6 | 27.2 | 46.7 | 38.2 | 33.8 |
N068 | chr1 | 108932501 | 108934619 | TRUE | OK | 12.9 | 0.0189 | 0.08638 | 0.6852 | -0.691 | -0.346 | 20.7 | 12.5 | 12.1 | 14.9 | 5.9 | 11.6 |
N069 | chr1 | 108932501 | 108934624 | TRUE | OK | 185.0 | 0.0019 | 6.027e-05 | 0.02172 | -0.454 | -0.227 | 208.0 | 203.3 | 191.4 | 181.7 | 151.8 | 174.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000121957.14 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |