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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr3 | 150541997 | 150544291 | TRUE | OK | 6227.7 | 0.0022 | 0.5027 | 0.8565 | -0.053 | -0.027 | 7058.8 | 7416.9 | 6737.3 | 5717.5 | 5136.3 | 5299.2 |
E002 | chr3 | 150544291 | 150544498 | TRUE | OK | 3902.4 | 0.0013 | 0.231 | 0.7696 | 0.077 | 0.038 | 4200.4 | 4629.7 | 4134.6 | 3715.0 | 3264.9 | 3470.0 |
E003 | chr3 | 150545396 | 150545702 | TRUE | OK | 29.3 | 0.0208 | 0.8811 | 0.9714 | 0.053 | 0.027 | 26.6 | 38.6 | 32.2 | 17.9 | 35.3 | 25.1 |
E004 | chr3 | 150545702 | 150545778 | TRUE | OK | 3863.4 | 0.00185 | 0.3081 | 0.7938 | 0.073 | 0.036 | 4032.8 | 4771.5 | 4041.0 | 3654.5 | 3240.4 | 3440.0 |
E005 | chr3 | 150546051 | 150546496 | TRUE | OK | 5673.4 | 0.00162 | 0.9195 | 0.9812 | 0.007 | 0.004 | 5975.2 | 7049.8 | 6112.8 | 5491.1 | 4810.2 | 4601.2 |
E006 | chr3 | 150546496 | 150546499 | TRUE | OK | 183.8 | 0.00706 | 0.8811 | 0.9714 | -0.018 | -0.009 | 230.7 | 213.8 | 179.3 | 193.6 | 153.7 | 131.5 |
E007 | chr3 | 150546499 | 150546501 | TRUE | OK | 137.6 | 0.00759 | 0.71 | 0.9229 | -0.063 | -0.032 | 176.5 | 165.8 | 130.9 | 138.0 | 119.5 | 94.7 |
E008 | chr3 | 150546501 | 150546789 | TRUE | OK | 216.8 | 0.00636 | 0.4918 | 0.8532 | 0.112 | 0.056 | 264.3 | 230.4 | 212.5 | 232.3 | 193.9 | 167.3 |
E009 | chr3 | 150546789 | 150547072 | TRUE | OK | 457.4 | 0.0162 | 0.001319 | 0.1537 | 0.693 | 0.347 | 449.6 | 315.9 | 462.3 | 539.1 | 476.9 | 500.8 |
E010 | chr3 | 150547072 | 150547177 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.13 | 0.07651 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 2.0 | 1.9 |
E011 | chr3 | 150565795 | 150566384 | TRUE | OK | 44.3 | 0.00501 | 0.06473 | 0.6548 | 0.396 | 0.198 | 40.4 | 42.8 | 48.3 | 51.6 | 39.2 | 43.5 |
E012 | chr3 | 150566384 | 150566798 | TRUE | OK | 41.8 | 0.00553 | 0.4726 | 0.847 | 0.158 | 0.079 | 41.4 | 45.9 | 47.3 | 35.7 | 37.2 | 43.5 |
E013 | chr3 | 150566798 | 150566900 | TRUE | OK | 30.8 | 0.0158 | 0.7696 | 0.9411 | 0.084 | 0.042 | 23.7 | 35.5 | 42.3 | 29.8 | 32.3 | 21.3 |
E014 | chr3 | 150566900 | 150567106 | TRUE | OK | 48.1 | 0.0108 | 0.1143 | 0.7118 | 0.379 | 0.189 | 39.4 | 45.9 | 58.4 | 42.7 | 51.9 | 50.3 |
E015 | chr3 | 150583116 | 150583155 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.3 | 0.0293 | 0.8079 | NA | NA | NA | 3.9 | 8.3 | 5.0 | 4.0 | 6.9 | 3.9 |
E016 | chr3 | 150585393 | 150585492 | TRUE | OK | 12.8 | 0.0141 | 0.02055 | 0.4965 | 0.887 | 0.444 | 7.9 | 15.6 | 8.1 | 13.9 | 14.7 | 16.4 |
E017 | chr3 | 150602943 | 150603168 | TRUE | OK | 26.7 | 0.00701 | 0.02743 | 0.5397 | 0.590 | 0.295 | 26.6 | 24.0 | 23.2 | 26.8 | 31.3 | 28.0 |
E018 | chr3 | 150603168 | 150603170 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0606 | 0.1275 | NA | NA | NA | 2.0 | 3.1 | 0.0 | 4.0 | 2.0 | 3.9 |
E019 | chr3 | 150603170 | 150603174 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.0647 | 0.1108 | NA | NA | NA | 2.0 | 2.1 | 0.0 | 4.0 | 2.0 | 2.9 |
E020 | chr3 | 150603174 | 150603228 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.136 | 0.7772 | NA | NA | NA | 3.0 | 2.1 | 0.0 | 3.0 | 0.0 | 1.9 |
J021 | chr3 | 150544498 | 150545702 | TRUE | OK | 2691.3 | 0.0022 | 0.4445 | 0.8377 | 0.059 | 0.029 | 2791.4 | 3315.8 | 2853.5 | 2481.0 | 2247.4 | 2458.7 |
J022 | chr3 | 150544498 | 150546051 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0987 | 0.6831 | NA | NA | NA | 5.9 | 3.1 | 1.0 | 1.0 | 4.9 | 3.9 |
J023 | chr3 | 150545778 | 150546051 | TRUE | OK | 3004.3 | 0.00188 | 0.06747 | 0.6586 | 0.137 | 0.068 | 3097.1 | 3625.5 | 3099.2 | 2897.0 | 2530.5 | 2776.8 |
J024 | chr3 | 150547072 | 150566900 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J025 | chr3 | 150547177 | 150602943 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J026 | chr3 | 150567106 | 150583116 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.0417 | 0.3496 | NA | NA | NA | 2.0 | 3.1 | 4.0 | 1.0 | 1.0 | 1.9 |
J027 | chr3 | 150567106 | 150585393 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.326 | 0.5497 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 2.0 | 0.0 | 0.0 |
J028 | chr3 | 150567106 | 150602943 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.8 | 0.0152 | 0.01676 | NA | NA | NA | 5.9 | 4.2 | 7.1 | 7.9 | 12.7 | 8.7 |
J029 | chr3 | 150585492 | 150602943 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0796 | 0.5349 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 1.0 | 2.0 | 1.0 |
N030 | chr3 | 150546830 | 150552355 | TRUE | OK | 424.3 | 0.018 | 0.001923 | 0.1862 | 0.704 | 0.352 | 413.1 | 286.7 | 434.1 | 508.3 | 439.7 | 464.1 |
N031 | chr3 | 150552425 | 150558387 | TRUE | OK | 639.7 | 0.00919 | 5.157e-05 | 0.01932 | 0.672 | 0.336 | 613.3 | 492.2 | 631.5 | 741.6 | 679.6 | 679.7 |
N032 | chr3 | 150552425 | 150562541 | TRUE | OK | 20.2 | 0.0274 | 0.07373 | 0.6685 | 0.704 | 0.352 | 22.7 | 12.5 | 18.1 | 31.8 | 14.7 | 21.3 |
N033 | chr3 | 150558462 | 150562541 | TRUE | OK | 830.9 | 0.00882 | 4.951e-05 | 0.01876 | 0.658 | 0.329 | 792.8 | 673.6 | 809.8 | 906.4 | 963.6 | 839.2 |
N034 | chr3 | 150562660 | 150563514 | TRUE | OK | 936.8 | 0.0098 | 0.0008169 | 0.1178 | 0.567 | 0.284 | 972.2 | 787.3 | 893.4 | 977.9 | 1066.4 | 923.3 |
N035 | chr3 | 150563614 | 150564298 | TRUE | OK | 823.1 | 0.00858 | 0.0003939 | 0.07683 | 0.565 | 0.282 | 859.8 | 700.7 | 768.5 | 853.8 | 856.9 | 899.2 |
N036 | chr3 | 150564381 | 150567692 | TRUE | OK | 806.7 | 0.00762 | 1.771e-05 | 0.008663 | 0.650 | 0.325 | 816.4 | 692.4 | 706.1 | 866.7 | 826.5 | 932.0 |
N037 | chr3 | 150567766 | 150567901 | TRUE | OK | 773.0 | 0.0123 | 0.004893 | 0.2933 | 0.532 | 0.266 | 836.1 | 646.5 | 727.2 | 794.2 | 748.2 | 885.6 |
N038 | chr3 | 150567929 | 150568012 | TRUE | OK | 11.9 | 0.0106 | 0.003146 | 0.2394 | 1.142 | 0.571 | 5.9 | 11.5 | 9.1 | 14.9 | 18.6 | 11.6 |
N039 | chr3 | 150568046 | 150568175 | TRUE | OK | 808.1 | 0.00739 | 0.0009838 | 0.1305 | 0.486 | 0.243 | 892.3 | 769.5 | 685.9 | 829.0 | 839.2 | 832.4 |
N040 | chr3 | 150568292 | 150571957 | TRUE | OK | 894.3 | 0.00522 | 0.0005125 | 0.09045 | 0.438 | 0.219 | 971.2 | 872.8 | 798.7 | 907.4 | 920.5 | 895.3 |
N041 | chr3 | 150572529 | 150575648 | TRUE | OK | 934.0 | 0.00452 | 0.002927 | 0.2315 | 0.351 | 0.175 | 1032.4 | 961.4 | 846.1 | 950.1 | 871.6 | 942.7 |
N042 | chr3 | 150575762 | 150581617 | TRUE | OK | 993.1 | 0.0043 | 0.0008415 | 0.1201 | 0.379 | 0.190 | 1048.1 | 1103.2 | 843.0 | 1007.7 | 966.5 | 990.0 |
N043 | chr3 | 150575762 | 150583199 | TRUE | OK | 31.0 | 0.00424 | 0.9152 | 0.9801 | -0.025 | -0.012 | 30.6 | 38.6 | 36.3 | 29.8 | 22.5 | 28.0 |
N044 | chr3 | 150581746 | 150583199 | TRUE | OK | 1281.3 | 0.00578 | 0.01129 | 0.4087 | 0.317 | 0.158 | 1239.4 | 1595.4 | 1115.0 | 1247.9 | 1268.2 | 1222.1 |
N045 | chr3 | 150583265 | 150583845 | TRUE | OK | 1410.7 | 0.00993 | 0.1162 | 0.7132 | 0.240 | 0.120 | 1286.7 | 1896.7 | 1270.1 | 1304.5 | 1371.0 | 1335.2 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000120742.11 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |