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Normalized Counts Table (ENSG00000116698.21)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr1	183472215	183472477	TRUE	OK	86.4	0.0102	0.1262	0.7209	0.286	0.143	91.7	42.8	104.8	98.3	90.1	90.9
E002	chr1	183472477	183472499	TRUE	OK	40.5	0.0064	0.7441	0.9337	0.056	0.028	50.3	22.9	48.3	37.7	43.1	40.6
E003	chr1	183472499	183472501	TRUE	OK	41.5	0.00635	0.9029	0.9768	0.009	0.004	52.3	24.0	50.4	37.7	42.1	42.5
E004	chr1	183472501	183472502	TRUE	OK	41.5	0.00635	0.9029	0.9768	0.009	0.004	52.3	24.0	50.4	37.7	42.1	42.5
E005	chr1	183472502	183472526	TRUE	OK	144.5	0.00988	0.3832	0.8181	-0.208	-0.104	194.2	90.7	188.4	143.0	117.5	133.4
E006	chr1	183472526	183472566	TRUE	OK	176.6	0.0112	0.4922	0.8532	-0.181	-0.091	238.6	108.4	226.6	180.7	151.8	153.7
E007	chr1	183472566	183472620	TRUE	OK	235.5	0.0134	0.8484	0.9627	-0.019	-0.009	305.7	132.4	288.1	239.3	216.4	231.1
E008	chr1	183472620	183472649	TRUE	OK	271.7	0.0179	0.5893	0.8845	0.054	0.027	353.0	141.8	323.3	286.9	248.7	276.5
E009	chr1	183472931	183472990	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0677	0.4257	NA	NA	NA	3.0	2.1	2.0	2.0	1.0	1.0
E010	chr1	183473720	183473898	TRUE	OK	41.0	0.0236	0.9658	0.992	-0.068	-0.034	63.1	20.9	44.3	45.7	30.4	41.6
E011	chr1	183501130	183501267	TRUE	OK	29.8	0.107	0.2503	0.7755	0.466	0.233	34.5	4.2	38.3	37.7	23.5	40.6
E012	chr1	183502252	183502287	TRUE	OK	26.2	0.0509	0.4577	0.8421	0.262	0.131	30.6	8.3	34.2	27.8	18.6	37.7
E013	chr1	183502287	183502391	TRUE	OK	44.1	0.0299	0.5809	0.8814	0.144	0.072	56.2	19.8	52.4	45.7	32.3	58.0
E014	chr1	183512836	183512868	TRUE	OK	271.4	0.0228	0.7037	0.9209	0.011	0.006	364.8	135.6	328.4	283.9	240.9	274.6
E015	chr1	183512868	183513356	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.531	0.9829	NA	NA	NA	2.0	0.0	0.0	2.0	0.0	0.0
E016	chr1	183515873	183515894	TRUE	OK	275.0	0.0249	0.7251	0.9278	-0.001	-0.001	387.5	135.6	320.3	291.9	250.7	263.9
E017	chr1	183515894	183515991	TRUE	OK	384.1	0.0231	0.7552	0.9368	-0.010	-0.005	531.5	196.0	454.3	407.0	350.6	365.5
E018	chr1	183515991	183516086	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.155	0.9957	NA	NA	NA	0.0	1.0	2.0	2.0	0.0	1.0
E019	chr1	183517625	183517665	TRUE	OK	35.9	0.0123	0.8311	0.958	-0.073	-0.036	52.3	26.1	34.2	31.8	29.4	41.6
E020	chr1	183517665	183517687	TRUE	OK	32.7	0.00869	0.7999	0.9498	0.050	0.025	46.3	21.9	30.2	32.8	29.4	35.8
E021	chr1	183517687	183517820	TRUE	OK	550.4	0.0268	0.3871	0.8194	0.147	0.073	709.9	261.7	637.6	649.3	520.0	524.0
E022	chr1	183518615	183518682	FALSE	LOW_COUNTS_INDEP_FILTER	3.0	0.0852	0.302	NA	NA	NA	5.9	0.0	6.0	3.0	1.0	1.9
E023	chr1	183526595	183526646	TRUE	OK	403.2	0.0283	0.3448	0.8054	0.175	0.087	518.6	184.6	463.3	483.5	369.2	400.3
E024	chr1	183526646	183526682	TRUE	OK	386.0	0.0294	0.3179	0.7968	0.194	0.097	491.0	173.1	445.2	468.6	354.5	383.8
E025	chr1	183526682	183526767	TRUE	OK	423.8	0.0311	0.3212	0.7984	0.184	0.092	544.3	184.6	493.5	488.5	406.4	425.4
E026	chr1	183527625	183527731	TRUE	OK	18.3	0.0352	0.1009	0.6987	0.630	0.315	18.7	4.2	21.2	17.9	20.6	27.1
E027	chr1	183527955	183528027	TRUE	OK	334.6	0.035	0.3458	0.8058	0.183	0.092	424.0	139.7	400.9	395.1	300.6	347.1
E028	chr1	183528891	183529014	TRUE	OK	370.6	0.0181	0.4576	0.8421	0.106	0.053	437.8	195.0	464.3	411.0	329.0	386.7
E029	chr1	183529014	183529042	TRUE	OK	275.5	0.0127	0.5374	0.8679	0.073	0.036	321.4	155.4	347.5	296.8	249.7	282.3
E030	chr1	183529397	183529517	TRUE	OK	391.1	0.014	0.4609	0.8432	0.093	0.046	460.5	215.8	486.5	419.0	365.3	399.3
E031	chr1	183529517	183529533	TRUE	OK	261.6	0.0179	0.501	0.8559	0.083	0.041	323.4	133.5	323.3	269.0	258.5	262.0
E032	chr1	183533163	183533326	TRUE	OK	436.1	0.0171	0.3725	0.8143	0.131	0.065	519.6	228.4	532.8	460.7	411.3	464.1
E033	chr1	183533675	183533832	TRUE	OK	530.1	0.0182	0.3492	0.8072	0.147	0.074	667.5	279.4	602.3	555.0	487.7	588.8
E034	chr1	183537144	183537215	TRUE	OK	424.4	0.0207	0.634	0.8991	0.037	0.018	560.1	221.1	504.6	434.8	380.0	445.7
E035	chr1	183538379	183538440	TRUE	OK	404.3	0.0235	0.5765	0.8804	0.075	0.038	531.5	209.6	468.4	432.9	332.0	451.5
E036	chr1	183540983	183541103	TRUE	OK	565.4	0.0189	0.3558	0.8094	0.147	0.073	687.2	295.1	670.8	608.6	511.2	619.7
E037	chr1	183542075	183542364	TRUE	OK	850.8	0.0109	0.1078	0.7053	0.239	0.119	956.4	482.8	979.0	893.5	862.7	930.1
E038	chr1	183542364	183542502	TRUE	OK	292.6	0.00911	0.178	0.7482	0.193	0.096	349.0	166.8	324.3	295.9	307.5	312.3
E039	chr1	183544352	183544497	TRUE	OK	660.3	0.0114	0.09856	0.6967	0.253	0.126	760.2	366.0	738.3	695.0	721.7	680.7
E040	chr1	183544929	183545312	TRUE	OK	879.3	0.0102	0.133	0.7251	0.212	0.106	1050.1	508.8	962.9	944.1	923.5	886.6
E041	chr1	183545965	183546129	TRUE	OK	516.4	0.00574	0.1756	0.7467	0.155	0.078	621.2	323.2	560.0	541.1	522.9	529.8
E042	chr1	183546129	183546337	TRUE	OK	668.6	0.00544	0.7847	0.9457	0.014	0.007	839.1	467.1	734.3	650.3	700.2	620.7
E043	chr1	183547102	183547252	TRUE	OK	49.8	0.00473	0.151	0.7352	0.281	0.140	50.3	30.2	57.4	55.6	55.8	49.3
E044	chr1	183548940	183549207	TRUE	OK	17.8	0.0107	0.03859	0.5885	0.673	0.337	20.7	9.4	12.1	19.9	21.5	23.2
E045	chr1	183549207	183549288	TRUE	OK	471.1	0.00275	0.7358	0.9314	-0.046	-0.023	578.8	354.5	531.8	440.8	477.9	442.8
E046	chr1	183549763	183549923	TRUE	OK	650.3	0.00315	0.7589	0.9381	0.017	0.008	746.4	465.1	771.5	624.5	660.0	634.2
E047	chr1	183549923	183550088	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.192	0.146	NA	NA	NA	0.0	0.0	1.0	0.0	2.0	2.9
E048	chr1	183550750	183550834	TRUE	OK	533.4	0.00179	0.4067	0.8259	0.062	0.031	602.5	380.6	619.4	546.0	527.8	524.0
E049	chr1	183550834	183550921	TRUE	OK	509.2	0.00127	0.5522	0.8724	0.044	0.022	582.7	398.3	557.0	529.2	512.2	475.7
E050	chr1	183551044	183551190	TRUE	OK	577.7	0.00335	0.6796	0.9134	-0.050	-0.025	729.6	457.8	611.4	610.6	543.5	513.4
E051	chr1	183551817	183552263	TRUE	OK	863.9	0.00155	0.8911	0.9739	-0.015	-0.007	1040.2	677.8	941.8	908.4	805.9	809.2
E052	chr1	183552263	183552976	TRUE	OK	1360.2	0.00237	0.7782	0.9439	-0.014	-0.007	1499.7	1196.0	1491.7	1405.8	1281.9	1285.9
E053	chr1	183552976	183554186	TRUE	OK	2328.4	0.0359	0.2529	0.7763	-0.321	-0.161	2455.2	2861.2	2393.2	2138.5	2016.3	2105.8
E054	chr1	183554186	183554188	TRUE	OK	16.2	0.0161	0.2409	0.7727	0.434	0.217	16.8	15.6	10.1	17.9	14.7	22.2
E055	chr1	183554188	183554190	TRUE	OK	11.3	0.0157	0.2844	0.7864	0.446	0.223	10.8	11.5	7.1	14.9	11.8	11.6
E056	chr1	183554190	183554193	FALSE	LOW_COUNTS_INDEP_FILTER	4.0	0.0335	0.06072	NA	NA	NA	3.0	2.1	2.0	6.9	4.9	4.8
E057	chr1	183597768	183597855	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E058	chr1	183598010	183598246	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J059	chr1	183472649	183501130	FALSE	LOW_COUNTS_INDEP_FILTER	8.6	0.0728	0.3577	NA	NA	NA	7.9	1.0	13.1	8.9	6.9	13.5
J060	chr1	183472649	183502252	FALSE	LOW_COUNTS_INDEP_FILTER	8.1	0.0409	0.9827	NA	NA	NA	11.8	3.1	10.1	4.0	7.8	11.6
J061	chr1	183472649	183512836	TRUE	OK	168.6	0.0175	0.5077	0.8585	0.091	0.046	216.9	85.5	198.4	186.6	156.7	167.3
J062	chr1	183472649	183515873	TRUE	OK	40.1	0.0527	0.7157	0.9247	0.018	0.009	64.1	13.6	44.3	43.7	31.3	43.5
J063	chr1	183472990	183473720	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.556	0.5599	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J064	chr1	183473898	183501130	FALSE	LOW_COUNTS_INDEP_FILTER	8.2	0.0503	0.1539	NA	NA	NA	11.8	1.0	6.0	9.9	12.7	7.7
J065	chr1	183501267	183502252	TRUE	OK	14.5	0.142	0.3963	0.8226	0.491	0.246	13.8	2.1	21.2	20.8	6.9	22.2
J066	chr1	183502391	183512836	TRUE	OK	24.0	0.00538	0.7415	0.9331	0.079	0.040	28.6	14.6	28.2	27.8	20.6	24.2
J067	chr1	183512868	183515873	TRUE	OK	205.4	0.0189	0.7914	0.9474	-0.012	-0.006	285.9	108.4	237.7	211.5	189.0	200.1
J068	chr1	183515991	183517625	TRUE	OK	28.1	0.0093	0.7838	0.9454	-0.083	-0.041	40.4	24.0	24.2	23.8	25.5	30.9
J069	chr1	183515991	183517687	TRUE	OK	263.5	0.0322	0.4954	0.8542	0.096	0.048	342.1	115.7	324.3	291.9	245.8	261.0
J070	chr1	183517820	183526595	TRUE	OK	325.7	0.0239	0.3169	0.7965	0.194	0.097	416.1	159.5	359.6	406.1	305.5	307.5
J071	chr1	183518682	183526595	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.056	0.4996	NA	NA	NA	3.0	0.0	5.0	2.0	1.0	1.9
J072	chr1	183526767	183527625	TRUE	OK	12.8	0.05	0.09709	0.6962	0.780	0.390	13.8	2.1	13.1	10.9	15.7	21.3
J073	chr1	183526767	183527955	TRUE	OK	248.6	0.0339	0.4951	0.8541	0.100	0.050	323.4	107.4	306.2	276.0	224.3	254.3
J074	chr1	183527731	183527955	TRUE	OK	10.0	0.021	0.5054	0.8576	0.258	0.129	13.8	2.1	12.1	10.9	8.8	12.6
J075	chr1	183528027	183528891	TRUE	OK	192.6	0.0356	0.3119	0.7949	0.230	0.115	243.5	80.3	221.6	228.3	162.6	219.5
J076	chr1	183529042	183529397	TRUE	OK	232.3	0.00934	0.6321	0.8984	0.046	0.023	271.2	137.6	292.1	248.2	210.5	234.0
J077	chr1	183529533	183533163	TRUE	OK	242.2	0.0189	0.423	0.8308	0.117	0.058	295.8	121.0	297.1	252.2	237.0	250.4
J078	chr1	183533326	183533675	TRUE	OK	245.7	0.0131	0.2209	0.765	0.204	0.102	278.1	132.4	292.1	260.1	230.1	281.3
J079	chr1	183533832	183537144	TRUE	OK	328.8	0.0218	0.4993	0.8554	0.091	0.045	440.7	167.9	369.7	325.6	308.5	360.6
J080	chr1	183537215	183538379	TRUE	OK	335.3	0.022	0.8872	0.9729	-0.024	-0.012	451.6	185.6	398.9	352.4	261.5	361.6
J081	chr1	183538440	183540983	TRUE	OK	323.8	0.0252	0.6579	0.9069	0.042	0.021	432.9	164.7	381.7	340.5	268.3	354.8
J082	chr1	183541103	183542075	TRUE	OK	337.4	0.0159	0.1132	0.7111	0.288	0.144	374.7	170.0	392.8	373.3	328.1	385.8
J083	chr1	183542364	183544352	TRUE	OK	231.0	0.00296	0.00744	0.3498	0.303	0.151	252.4	136.6	247.8	254.2	244.8	250.4
J084	chr1	183542502	183544352	TRUE	OK	180.3	0.00546	0.01827	0.4777	0.337	0.168	197.2	103.2	190.4	185.7	192.9	212.7
J085	chr1	183544497	183544929	TRUE	OK	361.2	0.0181	0.2527	0.7762	0.195	0.097	437.8	182.5	417.0	382.2	394.6	352.9
J086	chr1	183545312	183545965	TRUE	OK	295.3	0.00181	0.3256	0.7997	0.087	0.044	354.0	207.5	317.3	302.8	282.0	308.4
J087	chr1	183546337	183547102	TRUE	OK	20.8	0.0106	0.4824	0.8502	0.205	0.102	26.6	11.5	21.2	23.8	26.4	15.5
J088	chr1	183546337	183549207	TRUE	OK	316.7	0.00477	0.1611	0.7396	-0.199	-0.100	424.0	250.3	359.6	265.1	312.4	289.1
J089	chr1	183547252	183549207	TRUE	OK	19.5	0.00585	0.05639	0.641	0.564	0.282	17.7	13.6	17.1	21.8	25.5	21.3
J090	chr1	183549288	183549763	TRUE	OK	323.8	0.00107	0.8115	0.953	-0.026	-0.013	378.6	251.3	370.7	310.7	324.1	307.5
J091	chr1	183549923	183550750	TRUE	OK	374.6	0.00425	0.4864	0.8516	0.064	0.032	428.9	246.1	449.2	370.3	368.2	384.8
J092	chr1	183550921	183551044	TRUE	OK	344.4	0.00232	0.9545	0.9894	-0.004	-0.002	398.3	283.6	374.7	378.3	334.9	296.8
J093	chr1	183551190	183551817	TRUE	OK	325.0	0.00346	0.8607	0.966	0.010	0.005	418.1	246.1	328.4	337.5	305.5	314.2
J094	chr1	183551190	183552976	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.355	0.3339	NA	NA	NA	1.0	7.3	1.0	2.0	1.0	0.0
J095	chr1	183551190	183597768	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J096	chr1	183597855	183598010	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N097	chr1	183472649	183473720	TRUE	OK	12.6	0.00945	0.4876	0.852	0.248	0.124	15.8	7.3	12.1	14.9	9.8	15.5
N098	chr1	183473898	183512836	TRUE	OK	13.4	0.0418	0.115	0.7121	-0.819	-0.410	25.6	6.3	20.1	9.9	5.9	12.6
N099	chr1	183556230	183560095	TRUE	OK	123.7	0.0169	0.244	0.7736	0.309	0.155	103.5	121.0	115.8	155.9	109.7	136.3
N100	chr1	183560273	183563194	TRUE	OK	113.2	0.0148	0.9189	0.9811	-0.006	-0.003	125.2	123.0	99.7	124.1	103.8	103.5
N101	chr1	183563306	183563433	TRUE	OK	102.4	0.00638	0.2872	0.7875	0.199	0.100	109.4	94.9	88.6	118.1	97.9	105.4
N102	chr1	183563585	183564004	TRUE	OK	94.8	0.0154	0.06021	0.6489	0.470	0.235	78.9	91.8	74.5	112.2	108.7	102.5
N103	chr1	183564030	183565703	TRUE	OK	81.9	0.0073	0.01684	0.4665	0.475	0.238	73.0	73.0	65.5	92.3	96.9	90.9
N104	chr1	183565779	183566919	TRUE	OK	75.6	0.00307	0.008033	0.361	0.436	0.218	78.9	58.4	60.4	82.4	87.2	86.0
N105	chr1	183566988	183567203	TRUE	OK	66.7	0.00489	0.0005197	0.09087	0.649	0.324	68.0	43.8	48.3	92.3	68.5	79.3
N106	chr1	183567345	183569141	TRUE	OK	72.6	0.00466	4.685e-06	0.003008	0.842	0.421	49.3	54.2	57.4	102.3	84.2	88.0
N107	chr1	183569185	183570779	TRUE	OK	25.0	0.0087	7.316e-08	9.426e-05	1.608	0.804	15.8	9.4	13.1	29.8	44.1	37.7
N108	chr1	183570839	183573184	TRUE	OK	20.1	0.00767	0.0003156	0.06669	1.111	0.555	13.8	10.4	15.1	20.8	30.4	30.0
N109	chr1	183573292	183574486	TRUE	OK	22.5	0.00902	9.995e-08	0.0001218	1.678	0.839	12.8	12.5	8.1	31.8	29.4	40.6
N110	chr1	183574621	183577598	TRUE	OK	14.6	0.00998	6.032e-07	0.0005536	1.903	0.951	6.9	6.3	6.0	19.9	28.4	20.3
N111	chr1	183577707	183586894	TRUE	OK	12.7	0.00873	2.928e-05	0.01247	1.631	0.815	5.9	7.3	6.0	20.8	19.6	16.4
N112	chr1	183586977	183590155	TRUE	OK	15.0	0.0162	1.173e-05	0.006312	1.757	0.878	3.9	10.4	7.1	23.8	18.6	26.1

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000116698.21
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE