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Raw Counts Table (ENSG00000113163.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Raw Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr5	75356344	75356351	TRUE	OK	1300.3	0.0037	0.00134	0.155	-0.354	-0.177	1598.0	1059.0	1459.0	1228.0	1147.0	1355.0
E002	chr5	75356351	75357012	TRUE	OK	1945.1	0.00205	2.816e-08	4.067e-05	-0.459	-0.229	2355.0	1675.0	2203.0	1821.0	1711.0	1965.0
E003	chr5	75368485	75368486	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.143	0.5404	NA	NA	NA	1.0	0.0	1.0	2.0	0.0	2.0
E004	chr5	75368486	75368487	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.143	0.5404	NA	NA	NA	1.0	0.0	1.0	2.0	0.0	2.0
E005	chr5	75368487	75368517	FALSE	LOW_COUNTS_INDEP_FILTER	4.0	0.0348	0.5636	NA	NA	NA	3.0	4.0	6.0	3.0	4.0	4.0
E006	chr5	75368517	75368658	TRUE	OK	15.8	0.0378	0.497	0.8547	-0.304	-0.152	13.0	24.0	13.0	14.0	13.0	18.0
E007	chr5	75368658	75369236	FALSE	LOW_COUNTS_INDEP_FILTER	8.6	0.0189	0.2622	NA	NA	NA	5.0	8.0	7.0	13.0	8.0	11.0
E008	chr5	75369236	75369337	FALSE	LOW_COUNTS_INDEP_FILTER	3.5	0.0904	0.2719	NA	NA	NA	6.0	4.0	3.0	6.0	1.0	1.0
E009	chr5	75369337	75371120	TRUE	OK	53.0	0.00442	0.4608	0.8432	0.144	0.072	49.0	43.0	52.0	59.0	63.0	54.0
E010	chr5	75371120	75372330	TRUE	OK	802.3	0.0171	0.6994	0.9197	-0.084	-0.042	717.0	878.0	757.0	809.0	821.0	850.0
E011	chr5	75372330	75372418	TRUE	OK	103.6	0.00553	0.00555	0.3087	0.481	0.241	78.0	79.0	90.0	123.0	110.0	147.0
E012	chr5	75372418	75372430	TRUE	OK	105.5	0.00507	0.004085	0.2701	0.485	0.242	80.0	79.0	92.0	127.0	111.0	149.0
E013	chr5	75372430	75372597	TRUE	OK	202.4	0.00324	0.002226	0.2024	0.394	0.197	167.0	159.0	175.0	236.0	221.0	266.0
E014	chr5	75372597	75373269	TRUE	OK	699.2	0.00141	0.003121	0.2382	0.230	0.115	682.0	518.0	657.0	758.0	766.0	846.0
E015	chr5	75373269	75373362	TRUE	OK	185.6	0.00209	0.9616	0.9911	0.001	0.000	198.0	139.0	195.0	190.0	188.0	211.0
E016	chr5	75373362	75373739	TRUE	OK	403.1	0.005	0.105	0.7024	0.212	0.106	397.0	282.0	395.0	488.0	472.0	402.0
E017	chr5	75373739	75373962	TRUE	OK	275.4	0.00347	0.006091	0.322	0.336	0.168	255.0	191.0	253.0	362.0	310.0	294.0
E018	chr5	75373962	75374096	TRUE	OK	234.0	0.0106	0.2683	0.7817	0.232	0.116	208.0	199.0	209.0	325.0	213.0	258.0
E019	chr5	75374096	75374155	TRUE	OK	226.0	0.00876	0.7546	0.9367	0.070	0.035	217.0	212.0	202.0	283.0	204.0	245.0
E020	chr5	75374155	75374191	TRUE	OK	215.2	0.00712	0.9878	0.9971	0.010	0.005	218.0	202.0	194.0	258.0	191.0	235.0
E021	chr5	75374191	75378517	TRUE	OK	123.4	0.0119	0.1759	0.7468	0.290	0.145	105.0	120.0	92.0	145.0	136.0	147.0
E022	chr5	75378517	75379336	TRUE	OK	73.4	0.00425	0.2057	0.7599	-0.221	-0.111	82.0	69.0	76.0	62.0	71.0	83.0
E023	chr5	75379336	75379354	TRUE	OK	234.7	0.00605	0.8853	0.9724	-0.010	-0.005	229.0	220.0	225.0	276.0	209.0	256.0
E024	chr5	75379354	75379399	TRUE	OK	279.2	0.00464	0.7616	0.9388	-0.034	-0.017	294.0	261.0	254.0	318.0	267.0	290.0
E025	chr5	75379399	75379418	TRUE	OK	232.9	0.00363	0.622	0.8952	-0.058	-0.029	238.0	222.0	220.0	251.0	234.0	239.0
E026	chr5	75379418	75379454	TRUE	OK	261.1	0.00264	0.6088	0.8908	0.061	0.031	263.0	233.0	236.0	288.0	268.0	288.0
E027	chr5	75379454	75379459	TRUE	OK	215.1	0.00213	0.3236	0.7989	0.109	0.055	228.0	173.0	192.0	241.0	233.0	232.0
E028	chr5	75379459	75379473	TRUE	OK	231.9	0.00238	0.2058	0.7599	0.142	0.071	245.0	187.0	200.0	262.0	252.0	255.0
E029	chr5	75381071	75381144	TRUE	OK	299.6	0.00301	0.1747	0.7462	0.156	0.078	315.0	245.0	253.0	341.0	328.0	328.0
E030	chr5	75381144	75381201	TRUE	OK	307.6	0.00203	0.0732	0.6678	0.179	0.090	325.0	231.0	272.0	356.0	337.0	338.0
E031	chr5	75381948	75382077	TRUE	OK	364.9	0.00147	0.01801	0.4759	0.210	0.105	374.0	267.0	331.0	430.0	389.0	415.0
E032	chr5	75384641	75384712	TRUE	OK	339.4	0.00215	0.1652	0.7419	0.137	0.069	354.0	243.0	331.0	404.0	336.0	383.0
E033	chr5	75385901	75385923	TRUE	OK	288.0	0.0037	0.9561	0.9897	-0.002	-0.001	302.0	204.0	321.0	314.0	273.0	326.0
E034	chr5	75385923	75385947	TRUE	OK	272.5	0.00376	0.7905	0.9472	-0.041	-0.021	288.0	197.0	308.0	296.0	252.0	305.0
E035	chr5	75385947	75385992	TRUE	OK	268.7	0.00303	0.8283	0.9573	-0.034	-0.017	286.0	193.0	301.0	297.0	259.0	287.0
E036	chr5	75385992	75386034	TRUE	OK	306.2	0.00496	0.7206	0.9263	0.033	0.016	324.0	206.0	339.0	336.0	329.0	316.0
E037	chr5	75386034	75386057	FALSE	LOW_COUNTS_INDEP_FILTER	7.6	0.0204	0.7635	NA	NA	NA	7.0	6.0	10.0	8.0	5.0	10.0
E038	chr5	75389591	75389687	TRUE	OK	386.6	0.00469	0.1425	0.7314	0.174	0.087	406.0	248.0	391.0	426.0	439.0	428.0
E039	chr5	75399309	75399380	TRUE	OK	40.4	0.00574	0.9317	0.9839	0.019	0.010	42.0	36.0	37.0	45.0	47.0	37.0
E040	chr5	75399380	75399387	TRUE	OK	32.2	0.012	0.5	0.8556	-0.177	-0.088	34.0	32.0	32.0	41.0	32.0	23.0
E041	chr5	75400204	75400262	TRUE	OK	321.9	0.00735	0.0622	0.6507	0.270	0.135	320.0	186.0	334.0	375.0	359.0	374.0
E042	chr5	75400262	75400291	TRUE	OK	318.6	0.00764	0.03781	0.5854	0.308	0.154	328.0	179.0	313.0	378.0	351.0	380.0
E043	chr5	75400291	75400297	TRUE	OK	263.0	0.00524	0.006313	0.3257	0.373	0.186	258.0	151.0	250.0	333.0	284.0	316.0
E044	chr5	75400297	75402674	FALSE	LOW_COUNTS_INDEP_FILTER	4.5	0.172	0.9026	NA	NA	NA	7.0	2.0	4.0	7.0	7.0	0.0
E045	chr5	75402674	75402792	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E046	chr5	75402792	75402971	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.388	0.294	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	1.0
E047	chr5	75402971	75403058	TRUE	OK	409.7	0.0018	0.001246	0.149	0.297	0.149	388.0	281.0	389.0	479.0	431.0	510.0
E048	chr5	75410689	75411010	FALSE	LOW_COUNTS_INDEP_FILTER	8.6	0.0191	0.866	NA	NA	NA	11.0	8.0	5.0	11.0	8.0	9.0
E049	chr5	75411010	75411103	TRUE	OK	423.7	0.00199	0.02243	0.5089	0.212	0.106	414.0	293.0	422.0	487.0	437.0	509.0
E050	chr5	75416875	75417010	TRUE	OK	405.4	0.00285	0.08135	0.6787	0.178	0.089	410.0	272.0	412.0	441.0	434.0	483.0
E051	chr5	75417010	75417033	TRUE	OK	223.6	0.00509	0.2089	0.761	0.168	0.084	256.0	149.0	200.0	250.0	228.0	270.0
E052	chr5	75419340	75419419	TRUE	OK	289.2	0.00598	0.524	0.8635	0.077	0.039	344.0	195.0	270.0	330.0	286.0	324.0
E053	chr5	75419419	75419424	TRUE	OK	198.8	0.00999	0.9666	0.9922	-0.022	-0.011	250.0	124.0	202.0	225.0	193.0	208.0
E054	chr5	75425269	75425291	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E055	chr5	75425291	75425360	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.145	0.2771	NA	NA	NA	3.0	2.0	0.0	0.0	1.0	1.0
E056	chr5	75425360	75425473	TRUE	OK	279.8	0.0101	0.9335	0.9843	-0.045	-0.023	340.0	176.0	301.0	315.0	283.0	276.0
E057	chr5	75425473	75425494	TRUE	OK	196.1	0.00663	0.5119	0.8599	0.084	0.042	226.0	122.0	199.0	222.0	211.0	206.0
E058	chr5	75425494	75425499	TRUE	OK	190.8	0.0118	0.4034	0.8251	0.131	0.065	218.0	105.0	201.0	216.0	197.0	218.0
E059	chr5	75426370	75426438	TRUE	OK	250.7	0.00807	0.2556	0.7776	0.164	0.082	281.0	147.0	252.0	285.0	264.0	288.0
E060	chr5	75426438	75426478	TRUE	OK	210.4	0.0069	0.3812	0.8174	0.121	0.061	220.0	129.0	230.0	228.0	214.0	252.0
E061	chr5	75459064	75459181	TRUE	OK	308.3	0.00399	0.2836	0.7861	0.129	0.064	320.0	210.0	316.0	359.0	293.0	366.0
E062	chr5	75505229	75505981	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.823	0.5472	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
E063	chr5	75505981	75506004	TRUE	OK	236.5	0.00408	0.6486	0.904	0.058	0.029	259.0	171.0	235.0	275.0	213.0	276.0
E064	chr5	75506004	75506116	TRUE	OK	309.4	0.00384	0.2656	0.781	0.130	0.065	333.0	208.0	308.0	359.0	300.0	363.0
E065	chr5	75511111	75511200	TRUE	OK	226.5	0.00808	0.09131	0.6902	0.263	0.131	254.0	131.0	207.0	274.0	238.0	267.0
E066	chr5	75511200	75511266	TRUE	OK	216.6	0.0135	0.2021	0.7587	0.237	0.119	247.0	118.0	207.0	280.0	216.0	243.0
E067	chr5	75511266	75511283	TRUE	OK	242.3	0.00876	0.02032	0.4947	0.376	0.188	261.0	131.0	215.0	291.0	274.0	296.0
E068	chr5	75511283	75511286	TRUE	OK	229.4	0.00756	0.01217	0.4165	0.391	0.196	246.0	127.0	198.0	275.0	258.0	286.0
E069	chr5	75511286	75511302	TRUE	OK	252.0	0.00576	0.01229	0.4182	0.351	0.176	268.0	146.0	223.0	304.0	280.0	305.0
E070	chr5	75511302	75511317	TRUE	OK	243.8	0.00624	0.04553	0.6123	0.285	0.143	267.0	144.0	221.0	292.0	269.0	283.0
E071	chr5	75511317	75511420	TRUE	OK	342.4	0.0118	0.1034	0.7012	0.285	0.142	371.0	189.0	330.0	431.0	341.0	411.0
E072	chr5	75511420	75511428	TRUE	OK	283.5	0.0152	0.1249	0.72	0.290	0.145	309.0	144.0	282.0	344.0	293.0	345.0
E073	chr5	75511428	75511487	TRUE	OK	372.7	0.0127	0.2066	0.7603	0.213	0.107	407.0	205.0	383.0	451.0	378.0	432.0
E074	chr5	75511487	75511505	TRUE	OK	312.9	0.0138	0.3672	0.8127	0.156	0.078	346.0	176.0	330.0	385.0	294.0	362.0
E075	chr5	75511505	75511607	TRUE	OK	279.3	0.0143	0.3566	0.8096	0.161	0.081	306.0	154.0	299.0	343.0	266.0	322.0
E076	chr5	75511607	75511615	TRUE	OK	104.7	0.0119	0.1704	0.7443	0.274	0.137	121.0	57.0	94.0	130.0	100.0	132.0
E077	chr5	75511615	75511617	TRUE	OK	23.7	0.0408	0.1943	0.7559	0.471	0.236	29.0	6.0	22.0	29.0	24.0	34.0
E078	chr5	75511617	75511620	TRUE	OK	18.6	0.0115	0.1125	0.7101	0.505	0.253	20.0	6.0	18.0	23.0	22.0	24.0
E079	chr5	75511620	75511625	TRUE	OK	10.0	0.0314	0.2722	0.7829	0.482	0.241	14.0	2.0	8.0	12.0	12.0	13.0
E080	chr5	75511625	75511633	FALSE	LOW_COUNTS_INDEP_FILTER	5.6	0.114	0.6383	NA	NA	NA	10.0	0.0	5.0	6.0	8.0	5.0
E081	chr5	75511633	75511638	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.506	0.6828	NA	NA	NA	3.0	0.0	0.0	4.0	1.0	0.0
E082	chr5	75511638	75511701	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.624	0.6647	NA	NA	NA	0.0	1.0	0.0	3.0	0.0	0.0
E083	chr5	75511758	75512138	TRUE	OK	37.3	0.0135	0.7525	0.936	0.061	0.030	50.0	21.0	34.0	36.0	44.0	41.0
J084	chr5	75357012	75379418	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.173	0.6477	NA	NA	NA	0.0	0.0	1.0	0.0	1.0	1.0
J085	chr5	75357012	75381071	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J086	chr5	75368658	75369236	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.261	0.2107	NA	NA	NA	1.0	1.0	0.0	0.0	0.0	0.0
J087	chr5	75368658	75379336	TRUE	OK	10.5	0.0696	0.4529	0.8404	-0.475	-0.237	10.0	19.0	6.0	11.0	8.0	9.0
J088	chr5	75374191	75379336	TRUE	OK	182.8	0.00703	0.981	0.9954	0.016	0.008	175.0	175.0	170.0	220.0	164.0	198.0
J089	chr5	75374191	75381071	FALSE	LOW_COUNTS_INDEP_FILTER	6.3	0.0165	0.9819	NA	NA	NA	7.0	4.0	7.0	6.0	9.0	5.0
J090	chr5	75374191	75381144	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.558	0.5227	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
J091	chr5	75379473	75381071	TRUE	OK	218.8	0.00184	0.2059	0.76	0.134	0.067	235.0	174.0	189.0	240.0	242.0	242.0
J092	chr5	75381201	75381948	TRUE	OK	231.3	0.00174	0.003395	0.2472	0.303	0.152	236.0	157.0	201.0	271.0	273.0	261.0
J093	chr5	75382077	75384641	TRUE	OK	248.8	0.00235	0.04845	0.6216	0.218	0.109	255.0	175.0	230.0	309.0	243.0	292.0
J094	chr5	75382077	75389591	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.124	0.6732	NA	NA	NA	1.0	0.0	3.0	2.0	0.0	1.0
J095	chr5	75384712	75385901	TRUE	OK	233.5	0.00313	0.6225	0.8953	0.051	0.026	242.0	160.0	256.0	264.0	225.0	264.0
J096	chr5	75384712	75385947	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.56	0.6044	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J097	chr5	75386034	75389591	TRUE	OK	239.7	0.0046	0.6848	0.9151	0.043	0.021	260.0	163.0	255.0	242.0	274.0	255.0
J098	chr5	75386034	75400204	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0425	0.4877	NA	NA	NA	3.0	2.0	2.0	1.0	2.0	2.0
J099	chr5	75386057	75389591	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.149	0.4039	NA	NA	NA	0.0	0.0	1.0	2.0	0.0	1.0
J100	chr5	75389687	75399309	TRUE	OK	30.1	0.00412	0.6476	0.9036	0.108	0.054	31.0	25.0	27.0	35.0	33.0	31.0
J101	chr5	75389687	75400204	TRUE	OK	221.8	0.00826	0.06185	0.6507	0.293	0.147	226.0	122.0	225.0	251.0	258.0	261.0
J102	chr5	75389687	75411010	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.121	0.3855	NA	NA	NA	1.0	0.0	0.0	1.0	1.0	1.0
J103	chr5	75399387	75400204	TRUE	OK	30.6	0.0138	0.4396	0.8361	-0.210	-0.105	30.0	32.0	32.0	40.0	28.0	22.0
J104	chr5	75400291	75402971	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.0394	0.1299	NA	NA	NA	1.0	1.0	2.0	2.0	4.0	5.0
J105	chr5	75400297	75402674	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J106	chr5	75400297	75402971	TRUE	OK	252.4	0.00375	0.002546	0.2165	0.373	0.187	245.0	148.0	239.0	318.0	270.0	308.0
J107	chr5	75402792	75402971	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J108	chr5	75403058	75411010	TRUE	OK	300.5	0.00168	0.05528	0.6383	0.188	0.094	293.0	229.0	284.0	340.0	296.0	374.0
J109	chr5	75403058	75416875	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.0336	0.5357	NA	NA	NA	1.0	2.0	5.0	3.0	5.0	4.0
J110	chr5	75411103	75416875	TRUE	OK	277.8	0.00382	0.1472	0.7334	0.176	0.088	263.0	190.0	296.0	300.0	285.0	346.0
J111	chr5	75417033	75419340	TRUE	OK	198.4	0.00518	0.2787	0.7845	0.150	0.075	231.0	140.0	169.0	222.0	198.0	240.0
J112	chr5	75419424	75425269	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J113	chr5	75419424	75425291	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.104	0.2551	NA	NA	NA	3.0	2.0	0.0	0.0	1.0	1.0
J114	chr5	75419424	75425360	TRUE	OK	190.6	0.00945	0.9994	0.9998	-0.027	-0.013	236.0	119.0	198.0	219.0	185.0	195.0
J115	chr5	75425499	75426370	TRUE	OK	186.7	0.0123	0.4273	0.8322	0.123	0.062	215.0	102.0	197.0	207.0	194.0	215.0
J116	chr5	75426478	75459064	TRUE	OK	182.3	0.00541	0.2079	0.7606	0.178	0.089	179.0	114.0	198.0	205.0	182.0	225.0
J117	chr5	75459181	75505981	TRUE	OK	202.9	0.00308	0.4696	0.846	0.089	0.044	213.0	146.0	205.0	237.0	184.0	241.0
J118	chr5	75506116	75511111	TRUE	OK	164.4	0.00636	0.1587	0.7383	0.208	0.104	189.0	98.0	151.0	185.0	177.0	195.0
J119	chr5	75506116	75511428	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.558	0.5227	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
J120	chr5	75511505	75511758	FALSE	LOW_COUNTS_INDEP_FILTER	3.0	0.181	0.6111	NA	NA	NA	9.0	1.0	1.0	3.0	2.0	2.0
N121	chr5	75356448	75358656	TRUE	OK	1344.9	0.00189	4.965e-06	0.003163	-0.373	-0.187	1616.0	1147.0	1509.0	1253.0	1192.0	1395.0
N122	chr5	75358827	75359169	TRUE	OK	1687.3	0.0011	1.542e-07	0.0001767	-0.339	-0.169	1963.0	1487.0	1829.0	1578.0	1588.0	1731.0
N123	chr5	75359310	75359397	TRUE	OK	1455.2	0.00354	0.006389	0.3273	-0.296	-0.148	1795.0	1194.0	1536.0	1375.0	1356.0	1527.0
N124	chr5	75359511	75359984	TRUE	OK	10.4	0.0131	0.2626	0.7798	-0.468	-0.234	16.0	7.0	12.0	13.0	6.0	9.0
N125	chr5	75359556	75359984	TRUE	OK	1245.1	0.00467	0.1778	0.748	-0.170	-0.085	1503.0	1003.0	1246.0	1172.0	1240.0	1355.0
N126	chr5	75360139	75360287	TRUE	OK	1534.5	0.00335	0.0007469	0.112	-0.350	-0.175	1913.0	1330.0	1587.0	1448.0	1402.0	1577.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000113163.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE